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inconsistency_measure_jfact.java
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package inconsistency_measure;
import java.io.File;
import java.io.FileNotFoundException;
import java.io.FileOutputStream;
import java.io.PrintStream;
import java.text.DecimalFormat;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Comparator;
import java.util.HashSet;
import java.util.NoSuchElementException;
import java.util.Set;
import org.semanticweb.owl.explanation.api.Explanation;
import org.semanticweb.owl.explanation.api.ExplanationException;
import org.semanticweb.owl.explanation.api.ExplanationGenerator;
import org.semanticweb.owl.explanation.api.ExplanationGeneratorInterruptedException;
import org.semanticweb.owl.explanation.impl.blackbox.checker.InconsistentOntologyExplanationGeneratorFactory;
import org.semanticweb.owlapi.apibinding.OWLManager;
import org.semanticweb.owlapi.model.AddAxiom;
import org.semanticweb.owlapi.model.AxiomType;
import org.semanticweb.owlapi.model.OWLAsymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLAxiom;
import org.semanticweb.owlapi.model.OWLClass;
import org.semanticweb.owlapi.model.OWLClassAssertionAxiom;
import org.semanticweb.owlapi.model.OWLDataFactory;
import org.semanticweb.owlapi.model.OWLDifferentIndividualsAxiom;
import org.semanticweb.owlapi.model.OWLDisjointClassesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLDisjointUnionAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentClassesAxiom;
import org.semanticweb.owlapi.model.OWLEquivalentObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLInverseFunctionalObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLInverseObjectPropertiesAxiom;
import org.semanticweb.owlapi.model.OWLIrreflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLNamedIndividual;
import org.semanticweb.owlapi.model.OWLNegativeObjectPropertyAssertionAxiom;
//import org.semanticweb.owlapi.model.OWLObjectComplementOf;
import org.semanticweb.owlapi.model.OWLObjectProperty;
import org.semanticweb.owlapi.model.OWLObjectPropertyAssertionAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyDomainAxiom;
import org.semanticweb.owlapi.model.OWLObjectPropertyRangeAxiom;
import org.semanticweb.owlapi.model.OWLOntology;
import org.semanticweb.owlapi.model.OWLOntologyCreationException;
import org.semanticweb.owlapi.model.OWLOntologyManager;
import org.semanticweb.owlapi.model.OWLReflexiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLSameIndividualAxiom;
import org.semanticweb.owlapi.model.OWLSubClassOfAxiom;
import org.semanticweb.owlapi.model.OWLSubObjectPropertyOfAxiom;
import org.semanticweb.owlapi.model.OWLSymmetricObjectPropertyAxiom;
import org.semanticweb.owlapi.model.OWLTransitiveObjectPropertyAxiom;
import org.semanticweb.owlapi.model.RemoveAxiom;
import org.semanticweb.owlapi.reasoner.InconsistentOntologyException;
import org.semanticweb.owlapi.reasoner.OWLReasoner;
import org.semanticweb.owlapi.reasoner.OWLReasonerConfiguration;
import org.semanticweb.owlapi.reasoner.OWLReasonerFactory;
import org.semanticweb.owlapi.reasoner.ReasonerInterruptedException;
import org.semanticweb.owlapi.reasoner.SimpleConfiguration;
import org.semanticweb.owlapi.reasoner.TimeOutException;
import uk.ac.manchester.cs.jfact.JFactFactory;
public class inconsistency_measure_jfact {
public static void main(String[] args) throws Exception {
long startTime = System.currentTimeMillis();
try {
File file = new File("output_jfact_knowledgebaseK1.txt");
FileOutputStream fos = new FileOutputStream(file);
PrintStream ps = new PrintStream(fos);
System.setOut(ps);
//System.err.close();
ArrayList<Integer> explanationSizeList = new ArrayList<>();
ArrayList<Set<OWLAxiom>> MCKcandidate = new ArrayList<Set<OWLAxiom>>();
float onePerSizeOfM;
float sizeOfM;
float sumOfSize = 0;
HashSet<OWLAxiom> MIKAxiomSet = new HashSet<OWLAxiom>();
HashSet<OWLClass> MIKClassSet = new HashSet<OWLClass>();
HashSet<OWLNamedIndividual> MIKIndividualSet = new HashSet<OWLNamedIndividual>();
HashSet<OWLObjectProperty> MIKObjectPropertySet = new HashSet<OWLObjectProperty>();
HashSet<OWLAxiom> topBottom = new HashSet<OWLAxiom>();
Set<OWLClass> inconsistentClass = null;
Set<OWLNamedIndividual> inconsistentIndividual = null;
Set<OWLObjectProperty> inconsistentObjectProperty = null;
HashSet<OWLAxiom> ontologyAxiomSet = new HashSet<OWLAxiom>(3000000, 1000000F);
File inputOntologyFile = new File("examples/knowledgebaseK1.owl");
// ReasonerFactory rf = new ReasonerFactory(); //for hermit
OWLReasonerFactory rf = new JFactFactory(); // for jfact
OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
OWLDataFactory df = manager.getOWLDataFactory();
OWLOntology ontology = manager.loadOntologyFromOntologyDocument(inputOntologyFile);
OWLReasonerConfiguration configuration = new SimpleConfiguration(); // for
// JFact
/*
* Configuration configuration = new Configuration(); //for hermit
* configuration.throwInconsistentOntologyException=false; //for
* hermit
*/
OWLReasoner reasoner = rf.createReasoner(ontology, configuration); // for
// hermit
// and
// JFact
// OWLReasoner reasoner=rf.createReasoner(ontology); //for jfact but
// this uses hermit functional
System.out.println(
"Is ontology (file name: " + inputOntologyFile + ") consistent? " + reasoner.isConsistent());
Set<OWLAxiom> ontologyAxiomsCausingUnsatisfiable = new HashSet<OWLAxiom>();
Set<OWLSubClassOfAxiom> OWLSubClassOfAxiomSet = ontology.getAxioms(AxiomType.SUBCLASS_OF);
for (OWLSubClassOfAxiom OWLSubClassOf : OWLSubClassOfAxiomSet) {
ontologyAxiomSet.add(OWLSubClassOf);
}
Set<OWLEquivalentClassesAxiom> OWLEquivalentClassesAxiomSet = ontology
.getAxioms(AxiomType.EQUIVALENT_CLASSES);
for (OWLEquivalentClassesAxiom OWLEquivalentClasses : OWLEquivalentClassesAxiomSet) {
ontologyAxiomSet.add(OWLEquivalentClasses);
}
Set<OWLDisjointClassesAxiom> OWLDisjointClassesAxiomSet = ontology.getAxioms(AxiomType.DISJOINT_CLASSES);
for (OWLDisjointClassesAxiom OWLDisjointClasses : OWLDisjointClassesAxiomSet) {
ontologyAxiomSet.add(OWLDisjointClasses);
}
Set<OWLDisjointUnionAxiom> OWLDisjointUnionAxiomSet = ontology.getAxioms(AxiomType.DISJOINT_UNION);
for (OWLDisjointUnionAxiom OWLDisjointUnion : OWLDisjointUnionAxiomSet) {
ontologyAxiomSet.add(OWLDisjointUnion);
}
Set<OWLDifferentIndividualsAxiom> OWLDifferentIndividualsAxiomSet = ontology
.getAxioms(AxiomType.DIFFERENT_INDIVIDUALS);
for (OWLDifferentIndividualsAxiom OWLDifferentIndividuals : OWLDifferentIndividualsAxiomSet) {
ontologyAxiomSet.add(OWLDifferentIndividuals);
}
Set<OWLSameIndividualAxiom> OWLSameIndividualAxiomSet = ontology.getAxioms(AxiomType.SAME_INDIVIDUAL);
for (OWLSameIndividualAxiom OWLSameIndividual : OWLSameIndividualAxiomSet) {
ontologyAxiomSet.add(OWLSameIndividual);
}
Set<OWLClassAssertionAxiom> OWLClassAssertionAxiomSet = ontology.getAxioms(AxiomType.CLASS_ASSERTION);
for (OWLClassAssertionAxiom OWLClassAssertion : OWLClassAssertionAxiomSet) {
ontologyAxiomSet.add(OWLClassAssertion);
}
Set<OWLObjectPropertyAssertionAxiom> OWLObjectPropertyAssertionAxiomSet = ontology
.getAxioms(AxiomType.OBJECT_PROPERTY_ASSERTION);
for (OWLObjectPropertyAssertionAxiom OWLObjectPropertyAssertion : OWLObjectPropertyAssertionAxiomSet) {
ontologyAxiomSet.add(OWLObjectPropertyAssertion);
}
Set<OWLNegativeObjectPropertyAssertionAxiom> OWLNegativeObjectPropertyAssertionAxiomSet = ontology
.getAxioms(AxiomType.NEGATIVE_OBJECT_PROPERTY_ASSERTION);
for (OWLNegativeObjectPropertyAssertionAxiom OWLNegativeObjectPropertyAssertion : OWLNegativeObjectPropertyAssertionAxiomSet) {
ontologyAxiomSet.add(OWLNegativeObjectPropertyAssertion);
}
Set<OWLSubObjectPropertyOfAxiom> OWLSubObjectPropertyOfAxiomSet = ontology
.getAxioms(AxiomType.SUB_OBJECT_PROPERTY);
for (OWLSubObjectPropertyOfAxiom OWLSubObjectPropertyOf : OWLSubObjectPropertyOfAxiomSet) {
ontologyAxiomSet.add(OWLSubObjectPropertyOf);
}
Set<OWLEquivalentObjectPropertiesAxiom> OWLEquivalentObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.EQUIVALENT_OBJECT_PROPERTIES);
for (OWLEquivalentObjectPropertiesAxiom OWLEquivalentObjectProperty : OWLEquivalentObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLEquivalentObjectProperty);
}
Set<OWLDisjointObjectPropertiesAxiom> OWLDisjointObjectPropertiesSet = ontology
.getAxioms(AxiomType.DISJOINT_OBJECT_PROPERTIES);
for (OWLDisjointObjectPropertiesAxiom OWLDisjointObjectProperties : OWLDisjointObjectPropertiesSet) {
ontologyAxiomSet.add(OWLDisjointObjectProperties);
}
Set<OWLInverseObjectPropertiesAxiom> OWLInverseObjectPropertiesAxiomSet = ontology
.getAxioms(AxiomType.INVERSE_OBJECT_PROPERTIES);
for (OWLInverseObjectPropertiesAxiom OWLInverseObjectProperties : OWLInverseObjectPropertiesAxiomSet) {
ontologyAxiomSet.add(OWLInverseObjectProperties);
}
Set<OWLObjectPropertyDomainAxiom> OWLObjectPropertyDomainAxiomSet = ontology
.getAxioms(AxiomType.OBJECT_PROPERTY_DOMAIN);
for (OWLObjectPropertyDomainAxiom OWLObjectPropertyDomain : OWLObjectPropertyDomainAxiomSet) {
ontologyAxiomSet.add(OWLObjectPropertyDomain);
}
Set<OWLObjectPropertyRangeAxiom> OWLObjectPropertyRangeAxiomSet = ontology
.getAxioms(AxiomType.OBJECT_PROPERTY_RANGE);
for (OWLObjectPropertyRangeAxiom OWLObjectPropertyRange : OWLObjectPropertyRangeAxiomSet) {
ontologyAxiomSet.add(OWLObjectPropertyRange);
}
Set<OWLFunctionalObjectPropertyAxiom> OWLFunctionalObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.FUNCTIONAL_OBJECT_PROPERTY);
for (OWLFunctionalObjectPropertyAxiom OWLFunctionalObjectProperty : OWLFunctionalObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLFunctionalObjectProperty);
}
Set<OWLInverseFunctionalObjectPropertyAxiom> OWLInverseFunctionalObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.INVERSE_FUNCTIONAL_OBJECT_PROPERTY);
for (OWLInverseFunctionalObjectPropertyAxiom OWLInverseFunctionalObjectProperty : OWLInverseFunctionalObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLInverseFunctionalObjectProperty);
}
Set<OWLReflexiveObjectPropertyAxiom> OWLReflexiveObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.REFLEXIVE_OBJECT_PROPERTY);
for (OWLReflexiveObjectPropertyAxiom OWLReflexiveObjectProperty : OWLReflexiveObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLReflexiveObjectProperty);
}
Set<OWLIrreflexiveObjectPropertyAxiom> OWLIrreflexiveObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.IRREFLEXIVE_OBJECT_PROPERTY);
for (OWLIrreflexiveObjectPropertyAxiom OWLIrreflexiveObjectProperty : OWLIrreflexiveObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLIrreflexiveObjectProperty);
}
Set<OWLSymmetricObjectPropertyAxiom> OWLSymmetricObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.SYMMETRIC_OBJECT_PROPERTY);
for (OWLSymmetricObjectPropertyAxiom OWLSymmetricObjectProperty : OWLSymmetricObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLSymmetricObjectProperty);
}
Set<OWLAsymmetricObjectPropertyAxiom> OWLAsymmetricObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.ASYMMETRIC_OBJECT_PROPERTY);
for (OWLAsymmetricObjectPropertyAxiom OWLAsymmetricObjectProperty : OWLAsymmetricObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLAsymmetricObjectProperty);
}
Set<OWLTransitiveObjectPropertyAxiom> OWLTransitiveObjectPropertyAxiomSet = ontology
.getAxioms(AxiomType.TRANSITIVE_OBJECT_PROPERTY);
for (OWLTransitiveObjectPropertyAxiom OWLTransitiveObjectProperty : OWLTransitiveObjectPropertyAxiomSet) {
ontologyAxiomSet.add(OWLTransitiveObjectProperty);
}
Set<OWLAxiom> arrayOfExplanation = null;
Set<Set<OWLAxiom>> arrayOfExplanationSet = new HashSet<Set<OWLAxiom>>(3000000, 1000000F);
Set<OWLAxiom> theSet = new HashSet<OWLAxiom>(3000000, 1000000F);
theSet.addAll(ontologyAxiomSet);
System.out.println("======================");
int sizeOfK = ontologyAxiomSet.size();
System.out.println("Size of K: " + sizeOfK);
System.out.println(" ");
System.out.println("===============================================================");
System.out.println("==============INCONSISTENCY MEASURES FOR ONTOLOGY==============");
System.out.println("===============================================================");
if (reasoner.isConsistent()) {
System.out.println("1. DRASTIC INCONSISTENCY MEASURE I_d: " + 0);
} else {
System.out.println("1. DRASTIC INCONSISTENCY MEASURE I_d: " + 1);
}
System.out.println("***************************************************************");
ExplanationGenerator<OWLAxiom> explainInconsistency = new InconsistentOntologyExplanationGeneratorFactory(
rf, 1000000000000000000L).createExplanationGenerator(ontology);
Set<Explanation<OWLAxiom>> explanations = explainInconsistency
.getExplanations(df.getOWLSubClassOfAxiom(df.getOWLThing(), df.getOWLNothing()), 941); //set the limit of entailment
System.out.println("Explanation of inconsistency (MI(K)): " + explanations);
for (Explanation<OWLAxiom> explanation : explanations) { // explanation
// is
// M
// in
// MI(K),
// while
// explanations
// is
// MI(K).
arrayOfExplanation = explanation.getAxioms(); // arrayOfExplanation
// is M in
// MI(K)
System.out.println("-----------------------------------------------------------------------------");
System.out.println("MI(K) subset: " + arrayOfExplanation);
arrayOfExplanationSet.add(arrayOfExplanation); // arrayOfExplanationSet
// is MI(K)
// set
System.out.println("-----------------------------------------------------------------------------");
System.out.println("Axioms causing the inconsistency: ");
for (OWLAxiom causingAxiom : arrayOfExplanation) {
System.out.println(causingAxiom);
MIKAxiomSet.add(causingAxiom);
if ((causingAxiom.isBottomEntity() == true) || (causingAxiom.isTopEntity() == true)) {
topBottom.add(causingAxiom);
}
inconsistentClass = (Set<OWLClass>) causingAxiom.getClassesInSignature();
for (OWLClass theClass : inconsistentClass) {
// System.out.println("theClass: " + theClass);
MIKClassSet.add(theClass);
}
inconsistentIndividual = (Set<OWLNamedIndividual>) causingAxiom.getIndividualsInSignature();
for (OWLNamedIndividual theIndividual : inconsistentIndividual) {
MIKIndividualSet.add(theIndividual);
}
inconsistentObjectProperty = (Set<OWLObjectProperty>) causingAxiom.getObjectPropertiesInSignature();
for (OWLObjectProperty theObjectProperty : inconsistentObjectProperty) {
MIKObjectPropertySet.add(theObjectProperty);
}
}
System.out.println("-----------------------------------------------------------------------------");
System.out.println("--------------------------Computation for I_mic------------------------------");
System.out.println("M in MI(K): " + arrayOfExplanation);
sizeOfM = arrayOfExplanation.size();
System.out.println("M size: " + sizeOfM);
explanationSizeList.add((int) sizeOfM);
onePerSizeOfM = (float) 1 / sizeOfM;
System.out.println("One per M size: " + onePerSizeOfM);
sumOfSize = sumOfSize + onePerSizeOfM;
System.out.println("Sum of one per M size: " + sumOfSize);
System.out.println("-----------------------------------------------------------------------------");
}
float RiK;
float Msize;
float OneMinusRiK;
ArrayList<Float> RiKarray = new ArrayList<>();
int OWLSubClassOfAxiomSetSize = OWLSubClassOfAxiomSet.size();
int OWLEquivalentClassesAxiomSetSize = OWLEquivalentClassesAxiomSet.size();
int OWLDisjointClassesAxiomSetSize = OWLDisjointClassesAxiomSet.size();
int OWLDisjointUnionAxiomSetSize = OWLDisjointUnionAxiomSet.size();
int OWLDifferentIndividualsAxiomSetSize = OWLDifferentIndividualsAxiomSet.size();
int OWLSameIndividualAxiomSetSize = OWLSameIndividualAxiomSet.size();
int OWLClassAssertionAxiomSetSize = OWLClassAssertionAxiomSet.size();
int OWLObjectPropertyAssertionAxiomSetSize = OWLObjectPropertyAssertionAxiomSet.size();
int OWLNegativeObjectPropertyAssertionAxiomSetSize = OWLNegativeObjectPropertyAssertionAxiomSet.size();
int OWLSubObjectPropertyOfAxiomSetSize = OWLSubObjectPropertyOfAxiomSet.size();
int OWLEquivalentObjectPropertyAxiomSetSize = OWLEquivalentObjectPropertyAxiomSet.size();
int OWLDisjointObjectPropertiesSetSize = OWLDisjointObjectPropertiesSet.size();
int OWLInverseObjectPropertiesAxiomSetSize = OWLInverseObjectPropertiesAxiomSet.size();
int OWLObjectPropertyDomainAxiomSetSize = OWLObjectPropertyDomainAxiomSet.size();
int OWLObjectPropertyRangeAxiomSetSize = OWLObjectPropertyRangeAxiomSet.size();
int OWLFunctionalObjectPropertyAxiomSetSize = OWLFunctionalObjectPropertyAxiomSet.size();
int OWLInverseFunctionalObjectPropertyAxiomSetSize = OWLInverseFunctionalObjectPropertyAxiomSet.size();
int OWLReflexiveObjectPropertyAxiomSetSize = OWLReflexiveObjectPropertyAxiomSet.size();
int OWLIrreflexiveObjectPropertyAxiomSetSize = OWLIrreflexiveObjectPropertyAxiomSet.size();
int OWLSymmetricObjectPropertyAxiomSetSize = OWLSymmetricObjectPropertyAxiomSet.size();
int OWLAsymmetricObjectPropertyAxiomSetSize = OWLAsymmetricObjectPropertyAxiomSet.size();
int OWLTransitiveObjectPropertyAxiomSetSize = OWLTransitiveObjectPropertyAxiomSet.size();
System.out.println("OWLSubClassOfAxiomSetSize: " + OWLSubClassOfAxiomSetSize);
System.out.println("OWLEquivalentClassesAxiomSetSize: " + OWLEquivalentClassesAxiomSetSize);
System.out.println("OWLDisjointClassesAxiomSetSize: " + OWLDisjointClassesAxiomSetSize);
System.out.println("OWLDisjointUnionAxiomSetSize: " + OWLDisjointUnionAxiomSetSize);
System.out.println("OWLDifferentIndividualsAxiomSetSize: " + OWLDifferentIndividualsAxiomSetSize);
System.out.println("OWLSameIndividualAxiomSetSize: " + OWLSameIndividualAxiomSetSize);
System.out.println("OWLClassAssertionAxiomSetSize: " + OWLClassAssertionAxiomSetSize);
System.out.println("OWLObjectPropertyAssertionAxiomSetSize: " + OWLObjectPropertyAssertionAxiomSetSize);
System.out.println("OWLNegativeObjectPropertyAssertionAxiomSetSize: "
+ OWLNegativeObjectPropertyAssertionAxiomSetSize);
System.out.println("OWLSubObjectPropertyOfAxiomSetSize: " + OWLSubObjectPropertyOfAxiomSetSize);
System.out.println("OWLEquivalentObjectPropertyAxiomSetSize: " + OWLEquivalentObjectPropertyAxiomSetSize);
System.out.println("OWLDisjointObjectPropertiesSetSize: " + OWLDisjointObjectPropertiesSetSize);
System.out.println("OWLInverseObjectPropertiesAxiomSetSize: " + OWLInverseObjectPropertiesAxiomSetSize);
System.out.println("OWLObjectPropertyDomainAxiomSetSize: " + OWLObjectPropertyDomainAxiomSetSize);
System.out.println("OWLObjectPropertyRangeAxiomSetSize: " + OWLObjectPropertyRangeAxiomSetSize);
System.out.println("OWLFunctionalObjectPropertyAxiomSetSize: " + OWLFunctionalObjectPropertyAxiomSetSize);
System.out.println("OWLInverseFunctionalObjectPropertyAxiomSetSize: "
+ OWLInverseFunctionalObjectPropertyAxiomSetSize);
System.out.println("OWLReflexiveObjectPropertyAxiomSetSize: " + OWLReflexiveObjectPropertyAxiomSetSize);
System.out.println("OWLIrreflexiveObjectPropertyAxiomSetSize: " + OWLIrreflexiveObjectPropertyAxiomSetSize);
System.out.println("OWLSymmetricObjectPropertyAxiomSetSize: " + OWLSymmetricObjectPropertyAxiomSetSize);
System.out.println("OWLAsymmetricObjectPropertyAxiomSetSize: " + OWLAsymmetricObjectPropertyAxiomSetSize);
System.out.println("OWLTransitiveObjectPropertyAxiomSetSize: " + OWLTransitiveObjectPropertyAxiomSetSize);
System.out.println("----------------------------------------------------------------");
float sizeOfMI = explanations.size();
System.out.println("Explanation size: " + explanations.size());
System.out.println("2. MI-INCONSISTENCY MEASURE I_mi: " + sizeOfMI);
System.out.println("***************************************************************");
System.out.println("3. MI^C-INCONSISTENCY MEASURE I_mic: " + sumOfSize);
System.out.println("***************************************************************");
OWLReasonerFactory rf6 = new JFactFactory();
OWLOntologyManager manager6 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology6 = manager6.createOntology();
// OWLDataFactory df6 = manager6.getOWLDataFactory();
AddAxiom addAxiom6;
Set<OWLAxiom> axiomsToRemove6;
ArrayList<Integer> consistentSubsetSize = new ArrayList<>();
HashSet<Set<OWLAxiom>> consistentSubset = new HashSet<Set<OWLAxiom>>();
HashSet<Set<OWLAxiom>> inconsistentSubset = new HashSet<Set<OWLAxiom>>();
for (Set<OWLAxiom> s : powerSet(ontologyAxiomSet)) {
manager6 = OWLManager.createOWLOntologyManager();
AxiomOntology6 = manager6.createOntology();
axiomsToRemove6 = AxiomOntology6.getAxioms();
if (axiomsToRemove6 != null) {
manager6.removeAxioms(AxiomOntology6, axiomsToRemove6);
}
for (OWLAxiom axiomOfS : s) {
addAxiom6 = new AddAxiom(AxiomOntology6, axiomOfS);
manager6.applyChange(addAxiom6);
}
OWLReasoner reasoner6 = rf6.createReasoner(AxiomOntology6); // for
// hermit
// and
// JFact
System.out.println("C: " + s);
System.out.println("Is C consistent? " + reasoner6.isConsistent());
if (reasoner6.isConsistent() == true) {
consistentSubset.add(s);
consistentSubsetSize.add(s.size());
}
if (reasoner6.isConsistent() == false) {
inconsistentSubset.add(s);
}
}
for (int i = 0; i < sizeOfK; i++) {
int iPlus1 = i + 1;
Msize = Collections.frequency(explanationSizeList, iPlus1);
float Csize;
Csize = Collections.frequency(consistentSubsetSize, iPlus1);
System.out.println("Msize of " + iPlus1 + ": " + Msize);
System.out.println("Csize of " + iPlus1 + ": " + Csize);
float MsizePlusCsize = Msize + Csize;
if (Msize == 0) {
RiK = 0;
} else {
RiK = Msize / MsizePlusCsize;
}
System.out.println("R" + iPlus1 + "(K): " + Msize + "/" + MsizePlusCsize + "= " + RiK);
float RiKDivi = RiK / (float) iPlus1;
System.out.println("RiKDivi: " + RiKDivi);
OneMinusRiK = (float) 1 - RiKDivi;
System.out.println("(1 - RiK): " + OneMinusRiK);
RiKarray.add(OneMinusRiK);
}
float total = 1;
System.out.println("Number of one minus RiK: " + RiKarray.size());
for (float value : RiKarray) {
System.out.println("Each value in one minus RiK: " + value);
total *= value;
}
System.out.println("Total of multiplication of one minus RiK: " + total);
float idf = (float) 1 - total;
System.out.println("1 - Total of multiplication of one minus RiK: " + idf);
System.out.println("4. Df INCONSISTENCY MEASURE I_df: " + idf);
System.out.println("***************************************************************");
for (OWLAxiom MIKAxiom : MIKAxiomSet) {
System.out.println("Axiom of M in MI(K) : " + MIKAxiom);
}
float cardOfAxiomMIUnion = MIKAxiomSet.size();
System.out.println("5. PROBLEMATIC INCONSISTENCY MEASURE I_p: " + cardOfAxiomMIUnion);
System.out.println("***************************************************************");
float I_ir = sizeOfMI / sizeOfK;
System.out.println("Size of MI(K): " + sizeOfMI);
System.out.println("Size of K: " + sizeOfK);
if ((sizeOfMI == 0) && (sizeOfK == 0)) {
System.out.println("6. INCOMPATIBILITY RATIO INCONSISTENCY MEASURE I_ir: 0");
} else {
System.out.println("6. INCOMPATIBILITY RATIO INCONSISTENCY MEASURE I_ir: " + I_ir);
}
System.out.println("***************************************************************");
if (explanations.size() > 0) {
for (Set<OWLAxiom> inconsistent : inconsistentSubset) {
for (Set<OWLAxiom> consistent : consistentSubset) {
if ((inconsistent.containsAll(consistent) == true)
&& (inconsistent.equals(consistent) == false)) {
// if (inconsistent.size() != consistent.size() &&
// consistent.isEmpty() == false) {
MCKcandidate.add(consistent);
// }
}
}
}
} else {
MCKcandidate.add(ontologyAxiomSet);
}
for (Set<OWLAxiom> mck : eliminate_notMCK(MCKcandidate)) {
System.out.println("MCK: " + mck);
}
int MCsize = eliminate_notMCK(MCKcandidate).size();
// To compute SC(K) in MC Inconsistency Measure
OWLReasonerFactory rf8 = new JFactFactory(); // for jfact
OWLOntologyManager manager8 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology8 = manager8.createOntology();
Set<OWLAxiom> axiomsToRemove8;
AddAxiom addAxiom8;
for (OWLAxiom theAxiom : ontologyAxiomSet) {
manager8 = OWLManager.createOWLOntologyManager();
AxiomOntology8 = manager8.createOntology();
axiomsToRemove8 = AxiomOntology8.getAxioms();
if (axiomsToRemove8 != null) {
manager8.removeAxioms(AxiomOntology8, axiomsToRemove8);
}
addAxiom8 = new AddAxiom(AxiomOntology8, theAxiom);
manager8.applyChange(addAxiom8);
OWLReasoner reasoner8 = rf8.createReasoner(AxiomOntology8); // for
// hermit
// and
// JFact
System.out.println("The axiom: " + theAxiom);
System.out
.println("Is the axiom (" + theAxiom + ") consistent/satisfiable? " + reasoner8.isConsistent());
if (reasoner8.isConsistent() == false) {
ontologyAxiomsCausingUnsatisfiable.add(theAxiom);
}
}
float SCsize = ontologyAxiomsCausingUnsatisfiable.size();
System.out.println("MCsize: " + MCsize);
System.out.println("SCsize: " + SCsize);
float imc = (float) MCsize + SCsize - 1;
System.out.println("7. MC INCONSISTENCY MEASURE I_mc: " + imc);
System.out.println("***************************************************************");
System.out.println("Size of consistent subset size: " + consistentSubsetSize.size());
if (consistentSubsetSize.size() != 0) {
int maxOfSizeK = Collections.max(consistentSubsetSize);
System.out.println("Size of K: " + sizeOfK);
System.out.println("Max of size K: " + maxOfSizeK);
float inc = (float) sizeOfK - (float) maxOfSizeK;
System.out.println("8. NC INCONSISTENCY MEASURE I_nc: " + inc);
System.out.println("***************************************************************");
} else {
System.out.println("Size of K: " + sizeOfK);
float inc = (float) sizeOfK;
System.out.println("8. NC INCONSISTENCY MEASURE I_nc: " + inc);
System.out.println("***************************************************************");
}
Set<OWLClass> ontologyClass = null;
Set<OWLNamedIndividual> ontologyIndividual = null;
Set<OWLObjectProperty> ontologyObjectProperty = null;
int cardOfMIKClassSet = MIKClassSet.size();
int cardOfMIKIndividualSet = MIKIndividualSet.size();
int cardOfMIKObjectPropertySet = MIKObjectPropertySet.size();
System.out.println("MIKClassSet Size: " + cardOfMIKClassSet);
System.out.println("MIKIndividualSet Size: " + cardOfMIKIndividualSet);
System.out.println("MIKObjectPropertySet Size: " + cardOfMIKObjectPropertySet);
float cardOfSignAxiomMIKUnion = cardOfMIKClassSet + cardOfMIKIndividualSet + cardOfMIKObjectPropertySet;
for (OWLAxiom theAxiom : ontologyAxiomSet) {
ontologyClass = (Set<OWLClass>) theAxiom.getClassesInSignature();
ontologyIndividual = (Set<OWLNamedIndividual>) theAxiom.getIndividualsInSignature();
ontologyObjectProperty = (Set<OWLObjectProperty>) theAxiom.getObjectPropertiesInSignature();
for (OWLClass theClass2 : ontologyClass) {
// System.out.println("theClass2: " + theClass2);
MIKClassSet.add(theClass2);
}
for (OWLNamedIndividual theIndividual2 : ontologyIndividual) {
MIKIndividualSet.add(theIndividual2);
}
for (OWLObjectProperty theObjectProperty2 : ontologyObjectProperty) {
MIKObjectPropertySet.add(theObjectProperty2);
}
}
float cardOfSignInK = MIKClassSet.size() + MIKIndividualSet.size() + MIKObjectPropertySet.size();
System.out.println("Cardinality of signatures in axiom union: " + cardOfSignAxiomMIKUnion);
System.out.println("Cardinality of signatures in K: " + cardOfSignInK);
if ((cardOfSignAxiomMIKUnion == 0) && (cardOfSignInK == 0)) {
System.out.println("9. MV INCONSISTENCY MEASURE I_mv: 0 ");
} else {
System.out.println("9. MV INCONSISTENCY MEASURE I_mv: " + cardOfSignAxiomMIKUnion / cardOfSignInK);
}
System.out.println("***************************************************************");
OWLReasonerFactory rf3 = new JFactFactory();
OWLOntologyManager manager3 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology3 = manager3.createOntology();
// OWLDataFactory df3 = manager3.getOWLDataFactory();
AddAxiom addAxiom3;
Set<OWLAxiom> axiomsToRemove3;
OWLReasonerFactory rf5 = new JFactFactory();
OWLOntologyManager manager5 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology5 = manager3.createOntology();
// OWLDataFactory df5 = manager5.getOWLDataFactory();
AddAxiom addAxiom5;
Set<OWLAxiom> axiomsToRemove5;
Set<Set<OWLAxiom>> MCSes = new HashSet<Set<OWLAxiom>>();
for (Set<OWLAxiom> subsetM : powerSet(ontologyAxiomSet)) {
manager3 = OWLManager.createOWLOntologyManager();
AxiomOntology3 = manager3.createOntology();
// Condition 1 of MCS
axiomsToRemove3 = AxiomOntology3.getAxioms();
if (axiomsToRemove3 != null) {
manager3.removeAxioms(AxiomOntology3, axiomsToRemove3);
}
for (OWLAxiom axiomOfK : ontologyAxiomSet) {
addAxiom3 = new AddAxiom(AxiomOntology3, axiomOfK);
manager3.applyChange(addAxiom3);
}
System.out.println("========================================");
System.out.println("M: " + subsetM);
manager3.removeAxioms(AxiomOntology3, subsetM);
OWLReasoner reasoner3 = rf3.createReasoner(AxiomOntology3); // for
// hermit
// and
// JFact
System.out.println("Is K minus subset M consistent? " + reasoner3.isConsistent());
//
// Condition 2 of MCS
//
manager5 = OWLManager.createOWLOntologyManager();
AxiomOntology5 = manager5.createOntology();
axiomsToRemove5 = AxiomOntology5.getAxioms();
if (axiomsToRemove5 != null) {
manager5.removeAxioms(AxiomOntology5, axiomsToRemove5);
}
for (OWLAxiom axiomOfK : ontologyAxiomSet) {
addAxiom5 = new AddAxiom(AxiomOntology5, axiomOfK);
manager5.applyChange(addAxiom5);
}
ArrayList<String> consistentValue = new ArrayList<String>();
for (OWLAxiom Ci : subsetM) {
System.out.println("Ci: " + Ci);
manager5.removeAxioms(AxiomOntology5, subsetM);
manager5.addAxiom(AxiomOntology5, Ci);
OWLReasoner reasoner5 = rf5.createReasoner(AxiomOntology5);
System.out.println("Is K minus (subset M minus Ci) consistent? " + reasoner5.isConsistent());
if (reasoner5.isConsistent() == true) {
consistentValue.add("true");
} else if (reasoner5.isConsistent() == false) {
consistentValue.add("false");
}
}
if (reasoner3.isConsistent() == true) {
if (doesListContainAllFalse(consistentValue) == true) {
MCSes.add(subsetM);
}
}
}
System.out.println("MCSes size: " + MCSes.size());
Set<OWLClass> ontologyClass2 = null;
Set<OWLNamedIndividual> ontologyIndividual2 = null;
Set<OWLObjectProperty> ontologyObjectProperty2 = null;
HashSet<OWLClass> MCSClassSet = new HashSet<OWLClass>();
HashSet<OWLNamedIndividual> MCSIndividualSet = new HashSet<OWLNamedIndividual>();
HashSet<OWLObjectProperty> MCSObjectPropertySet = new HashSet<OWLObjectProperty>();
for (Set<OWLAxiom> MCS : MCSes) {
System.out.println("MCS: " + MCS);
for (OWLAxiom axiomInMcs : MCS) {
// System.out.println("axiomInMcs: " + axiomInMcs);
ontologyClass2 = (Set<OWLClass>) axiomInMcs.getClassesInSignature();
ontologyIndividual2 = (Set<OWLNamedIndividual>) axiomInMcs.getIndividualsInSignature();
ontologyObjectProperty2 = (Set<OWLObjectProperty>) axiomInMcs.getObjectPropertiesInSignature();
for (OWLClass theClass3 : ontologyClass2) {
// System.out.println("theClass3: " + theClass3);
MCSClassSet.add(theClass3);
}
for (OWLNamedIndividual theIndividual3 : ontologyIndividual2) {
// System.out.println("theIndividual3: " +
// theIndividual3);
MCSIndividualSet.add(theIndividual3);
}
for (OWLObjectProperty theObjectProperty3 : ontologyObjectProperty2) {
// System.out.println("theObjectProperty3: " +
// theObjectProperty3);
MCSObjectPropertySet.add(theObjectProperty3);
}
}
// System.out.println("MCSIndividualSet: " +
// ontologyIndividual2.size());
}
int cardOfMCSesSign = MCSClassSet.size() + MCSIndividualSet.size() + MCSObjectPropertySet.size();
System.out.println("Cardinality of Class in MCS: " + MCSClassSet.size());
System.out.println("Cardinality of Individual in MCS: " + MCSIndividualSet.size());
System.out.println("Cardinality of ObjectProperty in MCS: " + MCSObjectPropertySet.size());
System.out.println("Cardinality of signatures in MCS: " + cardOfMCSesSign);
System.out.println("Cardinality of signatures in K: " + cardOfSignInK);
if ((cardOfMCSesSign == 0) && (cardOfSignInK == 0)) {
System.out.println("10. ID_MCS INCONSISTENCY MEASURE: 0");
} else {
System.out.println("10. ID_MCS INCONSISTENCY MEASURE: " + cardOfMCSesSign / cardOfSignInK);
}
System.out.println("***************************************************************");
System.out.println("11. MIV_D INCONSISTENCY MEASURE: ");
for (OWLAxiom axiomInK : ontologyAxiomSet) {
if (MIKAxiomSet.contains(axiomInK) == true) {
System.out.println("MIV_D(K," + axiomInK + ") = 1");
} else if (MIKAxiomSet.contains(axiomInK) == false) {
System.out.println("MIV_D(K," + axiomInK + ") = 0");
}
}
System.out.println("***************************************************************");
System.out.println("12. MIV_Sharp INCONSISTENCY MEASURE: ");
Set<Set<OWLAxiom>> SetOfMinMIK = new HashSet<Set<OWLAxiom>>();
float onePerMsize, MIVc = 0;
for (OWLAxiom axiomInK2 : ontologyAxiomSet) {
SetOfMinMIK.clear();
for (Set<OWLAxiom> MinMIK : arrayOfExplanationSet) {
if (MinMIK.contains(axiomInK2)) {
SetOfMinMIK.add(MinMIK);
}
}
System.out.println("MIV_Sharp(K," + axiomInK2 + ") = " + SetOfMinMIK.size());
}
System.out.println("***************************************************************");
System.out.println("13. MIV_c INCONSISTENCY MEASURE: ");
for (OWLAxiom axiomInK3 : ontologyAxiomSet) {
MIVc = 0;
for (Set<OWLAxiom> MinMIK : arrayOfExplanationSet) {
if (MinMIK.contains(axiomInK3)) {
onePerMsize = (float) 1 / (MinMIK.size());
MIVc = MIVc + onePerMsize;
}
}
System.out.println("MIV_c(K," + axiomInK3 + ") = " + new DecimalFormat("####.##").format(MIVc));
}
System.out.println("***************************************************************");
System.out.println("14. MI SHAPLEY INCONSISTENCY MEASURE: ");
double shapleyValue, shapleyVal;
//long shapleyValue, shapleyVal;
int c, n;
// System.out.println("Factorial of 3: " + factorial(3));
OWLReasonerFactory rf4 = new JFactFactory(); // for jfact
OWLOntologyManager manager4 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology = manager4.createOntology();
OWLDataFactory df4 = manager4.getOWLDataFactory();
AddAxiom addAxiom4;
Set<OWLAxiom> axiomsToRemove4;
int sizeOfMIOfC, sizeOfMIOfCMinusAlpha;
//float factorial1, factorial2, factorial3, firstComputation, secondComputation;
long factorial1, factorial2, factorial3;
double firstComputation, secondComputation;
for (OWLAxiom alpha : ontologyAxiomSet) {
System.out.println("Alpha: " + alpha);
shapleyValue = 0;
shapleyVal = 0;
for (Set<OWLAxiom> s : powerSet(ontologyAxiomSet)) {
c = s.size();
n = ontologyAxiomSet.size();
manager4 = OWLManager.createOWLOntologyManager();
AxiomOntology = manager4.createOntology();
axiomsToRemove4 = AxiomOntology.getAxioms();
// for (OWLAxiom ax : axiomsToRemove)
if (axiomsToRemove4 != null) {
manager4.removeAxioms(AxiomOntology, axiomsToRemove4);
}
for (OWLAxiom axiomOfS : s) {
addAxiom4 = new AddAxiom(AxiomOntology, axiomOfS);
manager4.applyChange(addAxiom4);
}
OWLReasoner reasoner4 = rf4.createReasoner(AxiomOntology); // for
// hermit
// and
// JFact
System.out.println("========================================");
// //for hermit and JFact
System.out.println("C: " + s);
System.out.println("Is C consistent? " + reasoner4.isConsistent());
ExplanationGenerator<OWLAxiom> explainInconsistency4 = new InconsistentOntologyExplanationGeneratorFactory(
rf4, 1000000000000000000L).createExplanationGenerator(AxiomOntology);
Set<Explanation<OWLAxiom>> explanations4 = explainInconsistency4
.getExplanations(df4.getOWLSubClassOfAxiom(df4.getOWLThing(), df4.getOWLNothing()), 941); //set the limit of entailment
System.out.println("Explanation of inconsistency of C: " + explanations4);
RemoveAxiom removeAxiom = new RemoveAxiom(AxiomOntology, alpha);
manager4.applyChange(removeAxiom);
Set<OWLAxiom> cminusalphaaxioms = AxiomOntology.getAxioms();
for (OWLAxiom memberOfcminusalphaaxioms : cminusalphaaxioms) {
System.out.println("Member of C minus alpha axioms: " + memberOfcminusalphaaxioms);
}
sizeOfMIOfC = explanations4.size();
System.out.println("Size of MI of C: " + sizeOfMIOfC);
System.out.println("Is C minus alpha consistent? " + reasoner4.isConsistent());
ExplanationGenerator<OWLAxiom> explainInconsistency5 = new InconsistentOntologyExplanationGeneratorFactory(
rf4, 1000000000000000000L).createExplanationGenerator(AxiomOntology);
Set<Explanation<OWLAxiom>> explanations5 = explainInconsistency5
.getExplanations(df.getOWLSubClassOfAxiom(df4.getOWLThing(), df4.getOWLNothing()), 941); //set the limit of entailment
System.out.println("Explanation of inconsistency C minus alpha: " + explanations5);
sizeOfMIOfCMinusAlpha = explanations5.size();
System.out.println("Size of MI of C minus alpha: " + sizeOfMIOfCMinusAlpha);
System.out.println("Size of n: " + n);
System.out.println("Size of c: " + c);
factorial1 = factorial(c - 1);
factorial2 = factorial(n - c);
factorial3 = factorial(n);
firstComputation = ((double) factorial1 * (double) factorial2) / (double) factorial3;
secondComputation = (double) sizeOfMIOfC - (double) sizeOfMIOfCMinusAlpha;
System.out.println("factorial(c-1): " + new DecimalFormat("####.##").format((double) factorial1));
System.out.println("factorial(n-c): " + new DecimalFormat("####.##").format((double) factorial2));
System.out.println("factorial(n): " + new DecimalFormat("####.##").format((double) factorial3));
System.out.println("First Computation: " +
new DecimalFormat("####.##").format(firstComputation));
System.out.println("(Size of MI of C) - (Size of MI of C minus alpha): " + new DecimalFormat("####.##").format(secondComputation));
shapleyVal = firstComputation * secondComputation;
System.out.println("Shapley value: " + new DecimalFormat("####.##").format(shapleyVal));
shapleyValue = shapleyValue + shapleyVal;
System.out.println("Sum of Shapley Value = " + new DecimalFormat("####.##").format(shapleyValue));
System.out.println("========================================");
}
System.out.println("S^(I_MI)(K," + alpha + ") = " + new DecimalFormat("####.##").format(shapleyValue));
System.out.println("-----------------------------------------------");
}
System.out.println("***************************************************************");
System.out.println("15. SCORING INCONSISTENCY MEASURE I_s: ");
OWLReasonerFactory rf7 = new JFactFactory(); // for jfact
OWLOntologyManager manager7 = OWLManager.createOWLOntologyManager();
OWLOntology AxiomOntology7;
OWLDataFactory df7 = manager7.getOWLDataFactory();
AddAxiom addAxiom7;
Set<OWLAxiom> axiomsToRemove7;
int sizeOfMIOfK, sizeOfMIOfKMinusAlpha;
float scoringValue;
for (OWLAxiom alpha : ontologyAxiomSet) {
System.out.println("Alpha: " + alpha);
manager7 = OWLManager.createOWLOntologyManager();
AxiomOntology7 = manager7.createOntology();
axiomsToRemove7 = AxiomOntology7.getAxioms();
if (axiomsToRemove7 != null) {
manager7.removeAxioms(AxiomOntology7, axiomsToRemove7);
}
for (OWLAxiom alpha2 : ontologyAxiomSet) {
addAxiom7 = new AddAxiom(AxiomOntology7, alpha2);
manager7.applyChange(addAxiom7);
}
OWLReasoner reasoner7 = rf7.createReasoner(AxiomOntology7); // for
// hermit
// and
// JFact
System.out.println("========================================");
RemoveAxiom removeAxiom7 = new RemoveAxiom(AxiomOntology7, alpha);
manager7.applyChange(removeAxiom7);
Set<OWLAxiom> kminusalphaaxioms = AxiomOntology7.getAxioms();
System.out.println("Size of K minus axiom alpha: " + kminusalphaaxioms.size());
for (OWLAxiom memberOfkminusalphaaxioms : kminusalphaaxioms) {
System.out.println("Member of K minus axiom alpha: " + memberOfkminusalphaaxioms);
}
System.out.println("Is K minus alpha consistent? " + reasoner7.isConsistent());
ExplanationGenerator<OWLAxiom> explainInconsistency7 = new InconsistentOntologyExplanationGeneratorFactory(
rf7, 1000000000000000000L).createExplanationGenerator(AxiomOntology7);
Set<Explanation<OWLAxiom>> explanations7 = explainInconsistency7
.getExplanations(df7.getOWLSubClassOfAxiom(df7.getOWLThing(), df7.getOWLNothing()), 941); //set the limit of entailment
System.out.println("Explanation of inconsistency K minus alpha: " + explanations7);
sizeOfMIOfK = explanations.size();
sizeOfMIOfKMinusAlpha = explanations7.size();
System.out.println("Size of MI of K: " + sizeOfMIOfK);
System.out.println("Size of MI of K minus alpha: " + sizeOfMIOfKMinusAlpha);
scoringValue = sizeOfMIOfK - sizeOfMIOfKMinusAlpha;
System.out.println("(Size of MI of K) - (Size of MI of K minus alpha): " + scoringValue);
System.out.println("========================================");
System.out.println("I_s(K," + alpha + ") = " + scoringValue);
System.out.println("-----------------------------------------------");
}
System.out.println("***************************************************************");
} catch (NoSuchElementException e) {
System.out.println("NoSuchElementException: " + e.getMessage());
} catch (InconsistentOntologyException f) {
System.out.println("InconsistentOntologyException: " + f.getMessage());
} catch (FileNotFoundException g) {