CMakeLists.txt

#taken from http://geant4.cern.ch/support/source/geant4/CMakeLists.txt
# Tell CMake where the modules are
LIST(APPEND CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH}
    "${CMAKE_CURRENT_SOURCE_DIR}/cmake")
MESSAGE("-- CMAKE_MODULE_PATH: ${CMAKE_MODULE_PATH}")

INCLUDE(CyclusBuildSetup)
cyclus_minimum_cmake_version(MINIMUM_CMAKE_VERSION)
CMAKE_MINIMUM_REQUIRED(VERSION ${MINIMUM_CMAKE_VERSION})

# This project name is cyclus.
PROJECT(CYCLUS VERSION 1.6.0)

INCLUDE(CheckTypeSize)
CHECK_TYPE_SIZE("int" INT_SIZE_IN_BYTES LANGUAGE CXX)
MATH(EXPR INT_MAX "(1 << (${INT_SIZE_IN_BYTES} * 8 - 1)) - 1")

SET(CY_LARGE_INT "${INT_MAX}")
SET(CY_LARGE_DOUBLE "1e299")
SET(CY_NEAR_ZERO "1e-08")

MESSAGE("CY_LARGE_INT: ${CY_LARGE_INT}")
MESSAGE("CY_LARGE_DOUBLE: ${CY_LARGE_DOUBLE}")
MESSAGE("CY_NEAR_ZERO: ${CY_NEAR_ZERO}")

cyclus_require_out_of_source_build()
cyclus_require_cxx_support()

IF(CODE_COVERAGE)
    MESSAGE(STATUS "Compiling with --coverage flag for code coverage analysis")
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} --coverage")
ENDIF()

# enable assembly
enable_language(ASM)

# quiets fortify_source warnings when not compiling with optimizations
# in linux distros where compilers were compiled with fortify_source enabled by
# default (e.g. Arch linux).
MESSAGE("-- CMake Build Type: ${CMAKE_BUILD_TYPE}")
STRING(TOLOWER "${CMAKE_BUILD_TYPE}" BUILD_TYPE)
IF(NOT ${BUILD_TYPE} STREQUAL "release")
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0")
ENDIF()
# no overflow warnings because of silly coin-ness
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wno-overflow")

IF(NOT CYCLUS_DOC_ONLY)
    ##############################################################################################
    ################################# begin cmake configuration ##################################
    ##############################################################################################

    # set project directories
    SET(PROJECT_SOURCE_DIR "${CMAKE_CURRENT_SOURCE_DIR}")
    SET(CYCLUS_SHARE_DIR "${PROJECT_SOURCE_DIR}/share")
    SET(CYCLUS_CLI_DIR "${PROJECT_SOURCE_DIR}/cli")
    SET(CYCLUS_DOC_DIR "${PROJECT_SOURCE_DIR}/doc")
    SET(CYCLUS_SOURCE_DIR "${PROJECT_SOURCE_DIR}/src")
    SET(CYCLUS_STUB_DIR "${PROJECT_SOURCE_DIR}/stubs")
    SET(CYCLUS_TEST_DIR "${PROJECT_SOURCE_DIR}/tests")
    SET(CYCLUS_AGENTS_DIR "${PROJECT_SOURCE_DIR}/agents")
    SET(CYCLUS_CMAKE_DIR "${PROJECT_SOURCE_DIR}/cmake")
    SET(CYCLUS_PYSOURCE_DIR "${PROJECT_SOURCE_DIR}/cyclus")

    # set cycpp var
    SET(CYCPP "${CYCLUS_CLI_DIR}/cycpp.py")

    # set cython post-processor var
    SET(CYTHON_POST_PROCESSOR "${CYCLUS_CLI_DIR}/post-process-cython.py")

    # This makes all the libraries build as SHARED
    SET(BUILD_SHARED_LIBS true)

    # Setup build locations.
    cyclus_setup_build_locations(${CYCLUS_BINARY_DIR})

    SET(CYCLUS_EXECUTABLE_DIR "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}")

    cyclus_set_rpath()

    # Include macros
    INCLUDE(CopyWhenDiffMacro)
    INCLUDE(DownloadAndExtract)
    INCLUDE(UseCyclus)

    # set configuration variables
    cyclus_platform()
    cyclus_set_fast_compile()

    # set configuration for all library builds
    IF (WIN32)
        set(suffix ".dll")
        set(dynamicloadlib "windows_helper_functions.h")
    ELSEIF(APPLE)
        set(CMAKE_SHARED_LINKER_FLAGS "-undefined dynamic_lookup -flat_namespace")
        set(suffix ".dylib")
        set(dynamicloadlib "unix_helper_functions.h")
    ELSE()
        set(CMAKE_SHARED_LINKER_FLAGS "-Wl,--allow-shlib-undefined")
        set(suffix ".so")
        set(dynamicloadlib "unix_helper_functions.h")
    ENDIF()

    # enable testing, must be at top-level cmake file
    OPTION(USE_TESTING "Build testing" ON)
    IF(USE_TESTING)
        enable_testing()
        INCLUDE(CTest)
    ENDIF()

    ##############################################################################################
    ################################## end cmake configuration ###################################
    ##############################################################################################

    ##############################################################################################
    ################################### begin find libraries #####################################
    ##############################################################################################

    if (NOT DEPS_ROOT_DIR)
        get_filename_component(compdir ${CMAKE_CXX_COMPILER} DIRECTORY)
        get_filename_component(DEPS_ROOT_DIR ${compdir} DIRECTORY)
    endif (NOT DEPS_ROOT_DIR)
    SET(DEPS_HINTS HINTS "${DEPS_ROOT_DIR}")
    SET(DEPS_BIN_HINTS ${DEPS_HINTS} "${DEPS_ROOT_DIR}/bin")
    SET(DEPS_LIB_HINTS ${DEPS_HINTS} "${DEPS_ROOT_DIR}/lib")
    SET(DEPS_INCLUDE_HINTS HINTS "${DEPS_ROOT_DIR}/include")
    MESSAGE("-- Dependency Root Dir (DEPS_ROOT_DIR): ${DEPS_ROOT_DIR}")
    MESSAGE("-- Dependency Hints (DEPS_HINTS): ${DEPS_HINTS}")
    MESSAGE("-- Dependency Binary Hints (DEPS_BIN_HINTS): ${DEPS_BIN_HINTS}")
    MESSAGE("-- Dependency Library Hints (DEPS_LIB_HINTS): ${DEPS_LIB_HINTS}")
    MESSAGE("-- Dependency Include Hints (DEPS_INCLUDE_HINTS): ${DEPS_INCLUDE_HINTS}")
    MESSAGE("CMAKE_MODULE_PATH: ${CMAKE_MODULE_PATH}")

    # Search pkg-config utility first
    find_package(PkgConfig REQUIRED)


    # Debian installs useful LibXML2 files to /usr/include/libxml2/libxml
    # libxml2 is required for relaxng schema validation

    FIND_PACKAGE(LibXml2 REQUIRED)
    ADD_DEFINITIONS(${LIBXML2_DEFINITIONS})
    SET(LIBS ${LIBS} LibXml2::LibXml2)
    message("-- LibXML2 Include Dir: ${LIBXML2_INCLUDE_DIR}")
    message("-- LibXML2 Libraries: ${LIBXML2_LIBRARIES}")

    # Then use pkg-config for locate specific package
    pkg_check_modules(LIBXMLXX IMPORTED_TARGET libxml++-4.0)
    IF ( NOT LIBXMLXX_FOUND )
       pkg_check_modules(LIBXMLXX REQUIRED IMPORTED_TARGET libxml++-2.6)
    ENDIF ( NOT LIBXMLXX_FOUND )
    SET(LIBS ${LIBS} PkgConfig::LIBXMLXX)
    message("-- LibXML++ Include Dir: ${LIBXMLXX_INCLUDE_DIRS}")
    message("-- LibXML++ Libraries: ${LIBXMLXX_LIBRARIES}")
    
    # find lapack and link to it
    FIND_PACKAGE(LAPACK REQUIRED)
    set(LIBS ${LIBS} ${LAPACK_LIBRARIES})
    MESSAGE("-- Found LAPACK Linker Flags: ${LAPACK_LINKER_FLAGS}")
    MESSAGE("-- Found LAPACK Libraries: ${LAPACK_LIBRARIES}")
    MESSAGE("-- Found BLAS Libraries: ${BLAS_LIBRARIES}")

    # Find Sqlite3
    FIND_PACKAGE(SQLite3 REQUIRED)
    SET(LIBS ${LIBS} ${SQLite3_LIBRARIES})
    MESSAGE("-- Found SQLite3 Libraries: ${SQLite3_LIBRARIES}")

    # Find HDF5
    FIND_PACKAGE(HDF5 REQUIRED COMPONENTS HL)
    ADD_DEFINITIONS(${HDF5_DEFINITIONS})
    if(NOT HDF5_LIBRARY_DIRS STREQUAL "")
      set(LIBS ${LIBS} ${HDF5_LIBRARIES})
      link_directories(${HDF5_LIBRARY_DIRS})
    endif()
    set(LIBS ${LIBS} ${HDF5_C_LIBRARIES} ${HDF5_C_HL_LIBRARIES})
    MESSAGE("--    HDF5 Root: ${HDF5_ROOT}")
    MESSAGE("--    HDF5 Include directory: ${HDF5_INCLUDE_DIR}")
    MESSAGE("--    HDF5 Library directories: ${HDF5_LIBRARY_DIRS}")
    MESSAGE("--    HDF5 Libraries: ${HDF5_C_LIBRARIES}")
    MESSAGE("--    HDF5 High Level Libraries: ${HDF5_C_HL_LIBRARIES}")

    # Include the boost header files and the program_options library
    # Please be sure to use Boost rather than BOOST.
    # Capitalization matters on some platforms
    SET(Boost_USE_STATIC_LIBS OFF)
    SET(Boost_USE_STATIC_RUNTIME OFF)
    # SET(Boost_USE_MULTITHREADED    OFF)
    if (DEPS_ROOT_DIR)
      SET(BOOST_ROOT "${DEPS_ROOT_DIR}")
      SET(BOOST_INCLUDEDIR "${DEPS_INCLUDE_HINTS}")
    endif (DEPS_ROOT_DIR)
    FIND_PACKAGE(Boost COMPONENTS program_options filesystem system serialization REQUIRED)
    MESSAGE("--    Boost Root: ${Boost_ROOT}")
    MESSAGE("--    Boost Include directory: ${Boost_INCLUDE_DIR}")
    MESSAGE("--    Boost Library directories: ${Boost_LIBRARY_DIRS}")
    SET(LIBS ${LIBS} ${Boost_PROGRAM_OPTIONS_LIBRARY})
    MESSAGE("--    Boost Program Options location: ${Boost_PROGRAM_OPTIONS_LIBRARY}")
    SET(LIBS ${LIBS} ${Boost_SYSTEM_LIBRARY})
    MESSAGE("--    Boost System location: ${Boost_SYSTEM_LIBRARY}")
    SET(LIBS ${LIBS} ${Boost_FILESYSTEM_LIBRARY})
    MESSAGE("--    Boost Filesystem location: ${Boost_FILESYSTEM_LIBRARY}")
    SET(LIBS ${LIBS} ${Boost_SERIALIZATION_LIBRARY})
    MESSAGE("--    Boost Serialization location: ${Boost_SERIALIZATION_LIBRARY}")

    # find coin and link to it
    if(DEFAULT_ALLOW_MILPS)
        FIND_PACKAGE(COIN REQUIRED)
        MESSAGE("-- COIN Version: ${COIN_VERSION}")
        set(LIBS ${LIBS} ${COIN_LIBRARIES})
    endif()

    #
    # Some optional libraries to link in, as availble. Required for conda.
    #
    # pcre
    FIND_LIBRARY(PCRE_LIBRARIES pcre ${DEPS_LIB_HINTS})
    MESSAGE("-- Found PCRE Libraries (optional): ${PCRE_LIBRARIES}")
    IF(PCRE_LIBRARIES)
        set(LIBS ${LIBS} ${PCRE_LIBRARIES})
    ENDIF(PCRE_LIBRARIES)

    # gfortran
    FIND_LIBRARY(GFORTRAN_LIBRARIES gfortran ${DEPS_LIB_HINTS})
    MESSAGE("-- Found GFORTRAN Libraries (optional): ${GFORTRAN_LIBRARIES}")
    IF(GFORTRAN_LIBRARIES)
        set(LIBS ${LIBS} ${GFORTRAN_LIBRARIES})
    ENDIF(GFORTRAN_LIBRARIES)

    # openblas
    FIND_LIBRARY(BLAS_LIBRARIES blas ${DEPS_LIB_HINTS})
    MESSAGE("-- Found BLAS Libraries (optional): ${BLAS_LIBRARIES}")
    IF(BLAS_FOUND)
        set(LIBS ${LIBS} ${BLAS_LIBRARIES})
    ENDIF(BLAS_FOUND)

    # ClpSolver
    FIND_LIBRARY(CLPSOLVER_LIBRARIES ClpSolver ${DEPS_LIB_HINTS})
    MESSAGE("-- Found CLPSOLVER Libraries (optional): ${CLPSOLVER_LIBRARIES}")
    IF(CLPSOLVER_LIBRARIES)
        set(LIBS ${LIBS} ${CLPSOLVER_LIBRARIES})
    ENDIF(CLPSOLVER_LIBRARIES)

    # iconv
    FIND_LIBRARY(ICONV_LIBRARIES iconv ${DEPS_LIB_HINTS})
    MESSAGE("-- Found ICONV Libraries (optional): ${ICONV_LIBRARIES}")
    IF(ICONV_LIBRARIES)
        set(LIBS ${LIBS} ${ICONV_LIBRARIES})
    ENDIF(ICONV_LIBRARIES)

    # icudata
    FIND_LIBRARY(ICUDATA_LIBRARIES icudata ${DEPS_LIB_HINTS})
    MESSAGE("-- Found ICUDATA Libraries (optional): ${ICUDATA_LIBRARIES}")
    IF(ICUDATA_LIBRARIES)
        set(LIBS ${LIBS} ${ICUDATA_LIBRARIES})
    ENDIF(ICUDATA_LIBRARIES)

    # icui18n
    FIND_LIBRARY(ICUI18N_LIBRARIES icui18n ${DEPS_LIB_HINTS})
    MESSAGE("-- Found ICUI18N Libraries (optional): ${ICUI18N_LIBRARIES}")
    IF(ICUI18N_LIBRARIES)
        set(LIBS ${LIBS} ${ICUI18N_LIBRARIES})
    ENDIF(ICUI18N_LIBRARIES)

    # icuuc
    FIND_LIBRARY(ICUUC_LIBRARIES icuuc ${DEPS_LIB_HINTS})
    MESSAGE("-- Found ICUUC Libraries (optional): ${ICUUC_LIBRARIES}")
    IF(ICUUC_LIBRARIES)
        set(LIBS ${LIBS} ${ICUUC_LIBRARIES})
    ENDIF(ICUUC_LIBRARIES)

    #
    # Cython & Python Bindings
    #
    # Use new Python library finder
    find_package (Python3 REQUIRED COMPONENTS Interpreter Development)
    if(NOT DEFINED PYTHON_SITE_PACKAGES)
        execute_process(COMMAND "${Python3_EXECUTABLE}" -m site --user-site
                        OUTPUT_VARIABLE PYTHON_SITE_PACKAGES
                        OUTPUT_STRIP_TRAILING_WHITESPACE)
    endif()
    message("-- PYTHON_EXECUTABLE: ${Python3_EXECUTABLE}")
    message("-- PYTHON_SITE_PACKAGES: ${PYTHON_SITE_PACKAGES}")

    # Include the CMake script UseCython.cmake.  This defines add_cython_module().
    # Instruction for use can be found at the top of cmake/UseCython.cmake.

    FIND_PACKAGE(Cython)
    message("-- Found Cython: ${Cython_FOUND}")
    if(Cython_FOUND)
        message(STATUS "Cython Version: ${CYTHON_VERSION}")
        if("${CYTHON_VERSION}" VERSION_LESS "0.25")
          message(FATAL_ERROR "Cython version is too old, must be 0.25+.")
        endif()
        include(UseCython)
        find_package (Python3 REQUIRED COMPONENTS NumPy)
        find_package(Jinja2 REQUIRED)

        # With CMake, a clean separation can be made between the source tree and the
        # build tree.  When all source is compiled, as with pure C/C++, the source is
        # no-longer needed in the build tree.  However, with pure *.py source, the
        # source is processed directly.  To handle this, we reproduce the availability
        # of the source files in the build tree.
        add_custom_target(ReplicatePythonSourceTree ALL "${CMAKE_COMMAND}" -P
            "${CMAKE_CURRENT_SOURCE_DIR}/cmake/ReplicatePythonSourceTree.cmake"
            "${CMAKE_CURRENT_BINARY_DIR}"
            WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}")

        # make sure we know about having python
        add_definitions(-DCYCLUS_WITH_PYTHON)
        INCLUDE_DIRECTORIES("${CMAKE_CURRENT_BINARY_DIR}/cyclus")
    else(Cython_FOUND)
        # If we don't have Python bindings, we may try to find tcmalloc.
        # Python has to be specially compiled for tcmalloc support, which it
        # normally isn't.
        FIND_PACKAGE(Tcmalloc)
        SET(LIBS ${LIBS} ${Tcmalloc_LIBRARIES})
    endif(Cython_FOUND)

    ##############################################################################################
    #################################### end find libraries ######################################
    ##############################################################################################

    ##############################################################################################
    ###################################### begin includes ########################################
    ##############################################################################################

    # include all the directories we just found
    # NOTE: for some reason, adding quotes around
    # ${Glibmm_INCLUDE_DIRS} breaks Ubuntu 12.04
    set(inc_dirs
        "${Python3_INCLUDE_DIRS}"
        "${LIBXML2_INCLUDE_DIR}"
        "${LIBXMLXX_INCLUDE_DIRS}"
        "${Glibmm_INCLUDE_DIRS}"
        "${LIBXMLXXConfig_INCLUDE_DIR}"
        "${SQLite3_INCLUDE_DIR}"
        "${HDF5_INCLUDE_DIRS}"
        "${Boost_INCLUDE_DIR}"
        "${COIN_INCLUDE_DIRS}")
    IF(NOT inc_dirs STREQUAL "")
      INCLUDE_DIRECTORIES(${inc_dirs})
    ENDIF()
    message("-- Include Directories: ${inc_dirs}")

    if(Cython_FOUND)
        INCLUDE_DIRECTORIES(AFTER "${Python3_INCLUDE_DIRS}" "${_Python3_NumPy_INCLUDE_DIR}")
    endif(Cython_FOUND)
    # set core version, one way or the other
    IF(NOT "${DATA_MODEL_VERSION}" STREQUAL "")
        MESSAGE("-- $DATA_MODEL_VERSION set to: ${DATA_MODEL_VERSION}")
    ENDIF(NOT "${DATA_MODEL_VERSION}" STREQUAL "")
    IF("${DATA_MODEL_VERSION}" STREQUAL "")
        MESSAGE("No data model version was specified... using version ${CMAKE_PROJECT_VERSION_MAJOR}.${CMAKE_PROJECT_VERSION_MINOR}")
        SET(DATA_MODEL_VERSION "${CMAKE_PROJECT_VERSION_MAJOR}.${CMAKE_PROJECT_VERSION_MINOR}")
    ENDIF()
    MESSAGE("-- Cyclus version ($CYCLUS_PROJECT_VERSION) set to: ${CMAKE_PROJECT_VERSION}")

    ADD_SUBDIRECTORY("${CYCLUS_SHARE_DIR}")
    ADD_SUBDIRECTORY("${CYCLUS_SOURCE_DIR}")
    ADD_SUBDIRECTORY("${CYCLUS_TEST_DIR}")
    if(Cython_FOUND)
        ADD_SUBDIRECTORY("${CYCLUS_PYSOURCE_DIR}")
    endif(Cython_FOUND)
    ADD_SUBDIRECTORY("${CYCLUS_AGENTS_DIR}")
    ADD_SUBDIRECTORY("${CYCLUS_CLI_DIR}")
    ADD_SUBDIRECTORY("${CYCLUS_CMAKE_DIR}")
    
    ##############################################################################################
    ####################################### end includes #########################################
    ##############################################################################################

    ################# custom install files #######################################################
    INSTALL(
        FILES
        stubs/CMakeLists.txt
        stubs/example_facility.xml
        stubs/example_inst.xml
        stubs/example_region.xml
        stubs/install.py
        stubs/README.rst
        DESTINATION share/cyclus/stubs
        COMPONENT stubs
        )

    INSTALL(
        FILES
            stubs/src/CMakeLists.txt
            stubs/src/stub_facility.h
            stubs/src/stub_facility.cc
            stubs/src/stub_facility_tests.cc
            stubs/src/stub_inst.h
            stubs/src/stub_inst.cc
            stubs/src/stub_inst_tests.cc
            stubs/src/stub_region.h
            stubs/src/stub_region.cc
            stubs/src/stub_region_tests.cc
            stubs/src/stub_unit_test_driver.cc
        DESTINATION share/cyclus/stubs/src
        COMPONENT stubs
        )

    if(Cython_FOUND)
        install(CODE "
            message(\"############### Begin Python Install ###############\")
            set(ENV{CYCLUS_PROJECT_VERSION} \"${CMAKE_PROJECT_VERSION}\")
            execute_process(COMMAND ${Python3_EXECUTABLE} -m pip install --target=${PYTHON_SITE_PACKAGES} --force-reinstall --upgrade --no-deps .
                    WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
                    RESULT_VARIABLE res_var)
            if(NOT \"${res_var}\" STREQUAL \"\")
                message(FATAL_ERROR \"Process python -m pip install failed, res_var = '${res_var}'\")
            endif()
            message(\"Cyclus Python package successfully installed in ${PYTHON_SITE_PACKAGES}\")
        ")
    endif(Cython_FOUND)
    ##############################################################################################
    ################################## begin uninstall target ####################################
    ##############################################################################################

    CONFIGURE_FILE(
        "${PROJECT_SOURCE_DIR}/cmake/cmake_uninstall.cmake.in"
        "${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake"
        IMMEDIATE @ONLY
        )

    ADD_CUSTOM_TARGET(uninstall
        COMMAND "${CMAKE_COMMAND}" -P "\"${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake\"")

    ##############################################################################################
    ################################### end uninstall target #####################################
    ##############################################################################################

    ##############################################################################################
    ####################################### begin cpack ##########################################
    ##############################################################################################


    # Here's where we package it with CPack
    SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Cyclus : A nuclear fuel cycle simulator from UW-Madison.")

    # Here we set some components for installation with cpack
    SET(CPACK_COMPONENTS_ALL cyclus testing libraries data core)
    SET(CPACK_GENERATOR "DEB")

    # Organisation
    SET(CPACK_DEBIAN_PACKAGE_MAINTAINER "CNERG, UW-Madison") #required
    SET(CPACK_PACKAGE_VENDOR "CNERG, UW-Madison")
    SET(CPACK_PACKAGE_DESCRIPTION_FILE "${PROJECT_SOURCE_DIR}/README.rst")
    SET(CPACK_RESOURCE_FILE_LICENSE "${PROJECT_SOURCE_DIR}/LICENSE.rst")

    # Version
    SET(CPACK_PACKAGE_VERSION_MAJOR  ${CMAKE_PROJECT_VERSION_MAJOR})
    SET(CPACK_PACKAGE_VERSION_MINOR  ${CMAKE_PROJECT_VERSION_MINOR})
    SET(CPACK_PACKAGE_VERSION_PATCH  ${CMAKE_PROJECT_VERSION_PATCH})

    # Dependencies
    SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-all-dev (>= 1.71.0)")
    SET(CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, libhdf5-dev (>= 1.10.4)")
    SET(CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, libxml++2.6-dev (>= 2.40.1)")
    SET(CPACK_DEBIAN_PACKAGE_DEPENDS "${CPACK_DEBIAN_PACKAGE_DEPENDS}, coinor-libcbc-dev (>= 2.10.3)")
    MESSAGE("CPACK_DEBIAN_PACKAGE_DEPENDS ${CPACK_DEBIAN_PACKAGE_DEPENDS}")

    # Names
    SET(CPACK_PACKAGE_NAME "cyclus")
    SET(CPACK_PACKAGE_INSTALL_DIRECTORY "cyclus_${CPACK_PACKAGE_VERSION_MAJOR}")
    SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${CPACK_PACKAGE_INSTALL_DIRECTORY}.${CPACK_PACKAGE_VERSION_MINOR}")
    SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${CPACK_PACKAGE_INSTALL_DIRECTORY}.${CPACK_PACKAGE_VERSION_PATCH}")

    # Configuration
    SET(CPACK_INCLUDE_TOPLEVEL_DIRECTORY "1")
    SET(CPACK_DEBIAN_PACKAGE_SHLIBDEPS OFF)
    CONFIGURE_FILE(
      "${PROJECT_SOURCE_DIR}/cmake/CyclusCPackOptions.cmake.in"
      "${CYCLUS_BINARY_DIR}/cmake/CyclusCPackOptions.cmake" @ONLY
      )
    SET(CPACK_PROJECT_CONFIG_FILE "${CYCLUS_BINARY_DIR}/cmake/CyclusCPackOptions.cmake")
    SET(CPACK_PACKAGE_EXECUTABLES "cyclus" "CyclusUnitTestDriver")

    INCLUDE(CPack)

    ##############################################################################################
    ######################################## end cpack ###########################################
    ##############################################################################################

ENDIF(NOT CYCLUS_DOC_ONLY)

##############################################################################################
###################################### begin doxygen #########################################
##############################################################################################

# This is the directory that holds the doxygen doxyfile template (doxy.conf.in)
SET(DOC_SOURCE_DIR "${CYCLUS_SOURCE_DIR}")
SET(DOC_INPUT_DIR "${CYCLUS_DOC_DIR}")
SET(DOC_OUTPUT_DIR "${CMAKE_BINARY_DIR}/doc")

# If doxygen exists, use the doc/CMakeLists.txt file for further instructions.
FIND_PACKAGE(Doxygen)
IF(DOXYGEN_FOUND)
    ADD_SUBDIRECTORY("${CYCLUS_DOC_DIR}")
ELSE(DOXYGEN_FOUND)
    MESSAGE(STATUS "WARNING: Doxygen not found - doc won't be created")
ENDIF(DOXYGEN_FOUND)

##############################################################################################
####################################### end doxygen ##########################################
##############################################################################################