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DESCRIPTION
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Package: isoRelate
Title: Identity-by-Descent Inference of Haploid Recombining Organisms
Version: 0.1.0
Authors@R: person("Lyndal", "Henden", email = "lyndal_henden@hotmail.com", role = c("aut", "cre"))
Description: Pairwise identity by descent inference of haploid species using single nucleotide polymorphism data.
isoRelate can detect IBD in the presence of multi-clonal infections and also provides a function for
identifying loci under recent positive selection.
Depends:
R (>= 3.2.1)
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 6.0.1.9000
LinkingTo: Rcpp
Imports:
Rcpp (>= 0.12.5),
data.table,
doParallel,
foreach,
ggplot2 (>= 2.1.0),
igraph,
intergraph,
ggnetwork,
grDevices,
graphics,
utils,
stats
Suggests: knitr,
rmarkdown
VignetteBuilder: knitr