README.md

DEPRECATED

Please use CBNplot.

cpbnplot: Bayesian network plot for the enrichment analysis results

Plot bayesian network inferred from expression data based on the enrichment analysis results from libraries including clusterProfiler and ReactomePA using bnlearn.

Installation

library(devtools)
install_github("noriakis/cpbnplot")

Usage

• Documentation: https://noriakis.github.io/software/cpbnplot/
• bladder_cancer.ipynb: the example using bladder cancer dataset (GSE133624).

Plot examples

• The gene-to-gene relationship compared with the reference network.

• The plot is customizable highliting edges and nodes like hub genes.

• Another customized plot.