You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Would be awesome if we can include the mosdepth amplicon coverage heatmap in the MultiQC report too. Just need to export the matrix from the custom R script we are using by adding a line or two. Can then create custom content for MultiQC to chomp like we are doing in the rnaseq pipeline for the DESeq2 heatmap.
Would be awesome if we can include the mosdepth amplicon coverage heatmap in the MultiQC report too. Just need to export the matrix from the custom R script we are using by adding a line or two. Can then create custom content for MultiQC to chomp like we are doing in the rnaseq pipeline for the DESeq2 heatmap.
@ewels pointed to some colour codes to get the same palette as in the PDF heatmap:
"Here are the colour codes for the blue-yellow (viridis) colour scale:
https://jarrettmeyer.com/2018/08/07/viridis-color-palette
Get a list of 12 or so of them and set them as the colour_stops config option (or something like that it was, maybe check the docs)"
The text was updated successfully, but these errors were encountered: