We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Some tools that have a subcommand named build did not work with the pytest implementation of module tests.
build
The workaround was to make a symlink of the module name from build to something called build_test
build_test
(example: MALT/BUILD).
During nf-core modules create malt/build --migrate-pytest) I got an error message saying that it could not remove symlinks, so the migration failed.
nf-core modules create malt/build --migrate-pytest
This then meant pytest files were still under the test/ directory, and was not removed from the pytest tags yml file.
test/
(Unfortuantely I don't have it on my terminal anymore due to other traceback)
No response
The text was updated successfully, but these errors were encountered:
Done with #2770
Sorry, something went wrong.
No branches or pull requests
Description of the bug
Some tools that have a subcommand named
build
did not work with the pytest implementation of module tests.The workaround was to make a symlink of the module name from
build
to something calledbuild_test
(example: MALT/BUILD).
During
nf-core modules create malt/build --migrate-pytest
) I got an error message saying that it could not remove symlinks, so the migration failed.This then meant pytest files were still under the
test/
directory, and was not removed from the pytest tags yml file.(Unfortuantely I don't have it on my terminal anymore due to other traceback)
Command used and terminal output
No response
System information
No response
The text was updated successfully, but these errors were encountered: