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Implement pathway analysis using EnrichR #4

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Tracked by #3
nictru opened this issue Jun 13, 2024 · 2 comments
Open
Tracked by #3

Implement pathway analysis using EnrichR #4

nictru opened this issue Jun 13, 2024 · 2 comments
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enhancement New feature or request
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Stable transcript...

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@nictru
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nictru commented Jun 13, 2024 •
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Can be based on the implementation in scFlow
@nictru nictru mentioned this issue Jun 13, 2024
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@nictru nictru added the enhancement New feature or request label Jun 13, 2024
@nictru nictru added this to the Stable transcriptomics milestone Jun 13, 2024
@grst
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grst commented Jun 13, 2024

or go with decoupler-py?

@nictru
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nictru commented Jun 13, 2024

You are too fast for me - I am currently creating issues for all the methods that were implemented in the base pipelines, this is one that we would only have to adapt from scFlow.
The way I imagine this is to have multiple alternatives for various tasks. You probably know a lot more useful packages than I do, feel free to add them to the corresponding overview issues (#3 in this case)

@alexblaessle alexblaessle mentioned this issue Sep 6, 2024
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