diff --git a/CHANGELOG.md b/CHANGELOG.md index 56f7f6249c..c00837cf16 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#1113](https://github.com/nf-core/sarek/pull/1113) - Adding CNVkit genemetrics module - [#1193](https://github.com/nf-core/sarek/pull/1193) - Adding support for Sentieon's DnaScope for germline variant-calling including joint-germline - [#1271](https://github.com/nf-core/sarek/pull/1271) - Back to dev +- [#1290](https://github.com/nf-core/sarek/pull/1290) - Add nf-test for whole pipeline. ### Changed diff --git a/tests/main.nf.test b/tests/main.nf.test index 1b4e18a2e0..ad9209ab88 100644 --- a/tests/main.nf.test +++ b/tests/main.nf.test @@ -9,12 +9,13 @@ nextflow_pipeline { when { params { - outdir = "results" - max_cpus = 2 - max_memory = '6.GB' - max_time = '6.h' - input = "$projectDir/tests/csv/3.0/fastq_pair.csv" - validationSchemaIgnoreParams = 'test_data_base,test_data' + outdir = "results" + max_cpus = 2 + max_memory = '6.GB' + max_time = '6.h' + input = "$projectDir/tests/csv/3.0/fastq_pair.csv" + validationSchemaIgnoreParams = 'test_data_base,test_data,genomes' + use_gatk_spark = false } }