diff --git a/CHANGELOG.md b/CHANGELOG.md index c42715a89b..6a8e7c2d25 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,18 +9,18 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Added` +- [#46](https://github.com/nf-core/sarek/pull/46) - Add location to abstacts + +### `Changed` + - [#41](https://github.com/nf-core/sarek/pull/41) - Update `control-freec` from `11.4` to `11.5` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `ensembl-vep` from `95.2` to `98.2` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `freebayes` from `1.2.0` to `1.3.1` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `gatk4` from `4.1.2.0` to `4.1.4.0` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `manta` from `1.5.0` to `1.6.0` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `qualimap` from `2.2.2b` to `2.2.2c` -- [#41](https://github.com/nf-core/sarek/pull/41) - Update `tiddit` from `2.7.1` to `2.8.0` +- [#41](https://github.com/nf-core/sarek/pull/41), [#55](https://github.com/nf-core/sarek/pull/55) - Update `tiddit` from `2.7.1` to `2.8.1` - [#41](https://github.com/nf-core/sarek/pull/41) - Update `vcfanno` from `0.3.1` to `0.3.2` -- [#46](https://github.com/nf-core/sarek/pull/46) - Add location to abstacts - -### `Changed` - - [#54](https://github.com/nf-core/sarek/pull/54) - Bump version to `2.5.2dev` ### `Removed` diff --git a/docs/containers.md b/docs/containers.md index b86347db11..b75d74db9a 100644 --- a/docs/containers.md +++ b/docs/containers.md @@ -30,7 +30,7 @@ For annotation, the main container can be used, but the cache has to be download - Contain **[samtools](https://github.com/samtools/samtools)** 1.9 - Contain **[snpEff](http://snpeff.sourceforge.net/)** 4.3.1t - Contain **[Strelka2](https://github.com/Illumina/strelka)** 2.9.10 -- Contain **[TIDDIT](https://github.com/SciLifeLab/TIDDIT)** 2.8.0 +- Contain **[TIDDIT](https://github.com/SciLifeLab/TIDDIT)** 2.8.1 - Contain **[VCFanno](https://github.com/brentp/vcfanno)** 0.3.2 - Contain **[VCFtools](https://vcftools.github.io/index.html)** 0.1.16 - Contain **[VEP](https://github.com/Ensembl/ensembl-vep)** 98.2 diff --git a/environment.yml b/environment.yml index f1858415aa..56e57e8f0a 100644 --- a/environment.yml +++ b/environment.yml @@ -23,6 +23,6 @@ dependencies: - samtools=1.9 - snpeff=4.3.1t - strelka=2.9.10 - - tiddit=2.8.0 + - tiddit=2.8.1 - vcfanno=0.3.2 - vcftools=0.1.16 \ No newline at end of file