From 146691d800665a4739187234c0949ca75953f8c0 Mon Sep 17 00:00:00 2001 From: chasem Date: Wed, 21 Aug 2024 13:26:25 -0500 Subject: [PATCH 1/2] changing reports/SnpEff to snpeff to match outdir format --- tower.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/tower.yml b/tower.yml index acfdf00c2a..5e679d223b 100644 --- a/tower.yml +++ b/tower.yml @@ -51,9 +51,9 @@ reports: display: "Control-FREEC: parsable file with information about FREEC run" "**/reports/bcftools/*.bcftools_stats.txt": display: "All samples raw statistics" - "**/reports/SnpEff/*/*/*_snpEff.html": + "**/reports/snpeff/*/*/*_snpEff.html": display: "Statistics and plots for the SnpEff run" - "**/reports/SnpEff/*/*/*_snpEff.genes.txt": + "**/reports/snpeff/*/*/*_snpEff.genes.txt": display: "TXT (tab separated) summary counts for variants affecting each transcript and gene" "**/reports/EnsemblVEP/*/*/*_VEP.summary.html": display: "Summary of the VEP run" From 0de0737f3e6532ca2021665c336708038b1d3994 Mon Sep 17 00:00:00 2001 From: chasem Date: Wed, 21 Aug 2024 13:30:22 -0500 Subject: [PATCH 2/2] updating changelog with 1627 --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index e786b51f10..23f4076800 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -13,6 +13,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed +- [1627](https://github.com/nf-core/sarek/pull/1627) - Correct tower reports/snpeff format + ### Fixed - [1623](https://github.com/nf-core/sarek/pull/1623) - Update docs to clarify vep cache folder organisation