From 400d25e35442597b50f2d1ebadf60f5d301f9581 Mon Sep 17 00:00:00 2001
From: LouisBzh <louislenezet@gmail.com>
Date: Thu, 19 Sep 2024 16:34:23 +0200
Subject: [PATCH] Add default explanation

---
 nextflow.config      | 2 +-
 nextflow_schema.json | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/nextflow.config b/nextflow.config
index f1548767f1..5f42e2fd9f 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -38,7 +38,7 @@ params {
     three_prime_clip_r1 = 0
     three_prime_clip_r2 = 0
     trim_nextseq        = 0
-    length_required     = 15
+    length_required     = 15 // Default in FastP
     save_trimmed        = false
     save_split_fastqs   = false
 
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 90ef701ad8..b8a8c54331 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -182,7 +182,7 @@
                     "default": 15,
                     "fa_icon": "fas fa-cut",
                     "description": "Minimum length of reads to keep",
-                    "help_text": "This is the minimum length of reads to keep after trimming. Corresponds to the FastP flag `--length_required`.",
+                    "help_text": "This is the minimum length of reads to keep after trimming. Corresponds to the FastP flag `--length_required` (default in FastP is 15bp).",
                     "hidden": true
                 },
                 "save_trimmed": {