diff --git a/CHANGELOG.md b/CHANGELOG.md index 7e06350e8..a45025384 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -113,6 +113,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements - [PR #1352](https://github.com/nf-core/rnaseq/pull/1352) - Assorted fixes to MultiQC usage - [PR #1355](https://github.com/nf-core/rnaseq/pull/1355) - Make all curves on subway map better looking, and all lines now have the same width - [PR #1357](https://github.com/nf-core/rnaseq/pull/1357) - Fix anchor issue in multiqc +- [PR #1358](https://github.com/nf-core/rnaseq/pull/1358) - Update test profiles to restore a static URI for megatests ### Parameters diff --git a/conf/test.config b/conf/test.config index 84e3bdc8a..f7a9fca91 100644 --- a/conf/test.config +++ b/conf/test.config @@ -20,19 +20,19 @@ params { max_time = '6.h' // Input data - input = params.pipelines_testdata_base_path + 'samplesheet/v3.10/samplesheet_test.csv' + input = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/samplesheet/v3.10/samplesheet_test.csv' // Genome references - fasta = params.pipelines_testdata_base_path + 'reference/genome.fasta' - gtf = params.pipelines_testdata_base_path + 'reference/genes_with_empty_tid.gtf.gz' - gff = params.pipelines_testdata_base_path + 'reference/genes.gff.gz' - transcript_fasta = params.pipelines_testdata_base_path + 'reference/transcriptome.fasta' - additional_fasta = params.pipelines_testdata_base_path + 'reference/gfp.fa.gz' - - bbsplit_fasta_list = params.pipelines_testdata_base_path + 'reference/bbsplit_fasta_list.txt' - hisat2_index = params.pipelines_testdata_base_path + 'reference/hisat2.tar.gz' - salmon_index = params.pipelines_testdata_base_path + 'reference/salmon.tar.gz' - rsem_index = params.pipelines_testdata_base_path + 'reference/rsem.tar.gz' + fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/genome.fasta' + gtf = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/genes_with_empty_tid.gtf.gz' + gff = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/genes.gff.gz' + transcript_fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/transcriptome.fasta' + additional_fasta = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/gfp.fa.gz' + + bbsplit_fasta_list = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/bbsplit_fasta_list.txt' + hisat2_index = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/hisat2.tar.gz' + salmon_index = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/salmon.tar.gz' + rsem_index = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/reference/rsem.tar.gz' // Other parameters skip_bbsplit = false diff --git a/conf/test_full.config b/conf/test_full.config index 49ce794d3..320b8156f 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -15,7 +15,7 @@ params { config_profile_description = 'Full test dataset to check pipeline function' // Parameters for full-size test - input = params.pipelines_testdata_base_path + 'samplesheet/v3.10/samplesheet_full.csv' + input = 'https://raw.githubusercontent.com/nf-core/test-datasets/626c8fab639062eade4b10747e919341cbf9b41a/samplesheet/v3.10/samplesheet_full.csv' genome = 'GRCh37' pseudo_aligner = 'salmon' }