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BUSCO graphs for assembled genomes #77

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grunwald opened this issue Jun 3, 2024 · 2 comments
Open

BUSCO graphs for assembled genomes #77

grunwald opened this issue Jun 3, 2024 · 2 comments

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@grunwald
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grunwald commented Jun 3, 2024

Add BUSCO completeness to any assembled genomes.

@logankblair
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logankblair commented Jul 18, 2024

BUSCO generates its completeness plot from a companion script (scripts/generate_plot.py). Instead calling this particular script within a subworkflow, then moving images around, it may be simpler to generate a similar version within the main report R script.

@zachary-foster
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We now run busco on all eukaryotic inputs, but it is not yet run on prokaryotes. We could put it in the quality control section for prokaryotes, or do a busco phylogeny for prokaryotes as well (busco is the longest step in making a phylogeny, so might as well make a busco phylogeny if we are running busco).

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