From 3201ea7947dbb59be4079ef6f07388f83fc53470 Mon Sep 17 00:00:00 2001
From: tanyasarkjain <67300971+tanyasarkjain@users.noreply.github.com>
Date: Thu, 28 Nov 2024 10:23:10 -0800
Subject: [PATCH] Update subworkflows/local/repeat_characterization/main.nf

Co-authored-by: Felix Lenner <52530259+fellen31@users.noreply.github.com>
---
 subworkflows/local/repeat_characterization/main.nf | 1 -
 1 file changed, 1 deletion(-)

diff --git a/subworkflows/local/repeat_characterization/main.nf b/subworkflows/local/repeat_characterization/main.nf
index 13a79b6..4e60737 100644
--- a/subworkflows/local/repeat_characterization/main.nf
+++ b/subworkflows/local/repeat_characterization/main.nf
@@ -43,7 +43,6 @@ workflow  REPEAT_CHARACTERIZATION{
     //Index the VCF file
     BCFTOOLS_INDEX(BCFTOOLS_SORT.out.vcf)
 
-
     bam_bai_ch = SAMTOOLS_SORT.out.bam.join(SAMTOOLS_INDEX.out.bai).view()
     bam_bai_vcf_tbi_ch =  SAMTOOLS_SORT.out.bam.join(SAMTOOLS_INDEX.out.bai).join(BCFTOOLS_SORT.out.vcf).join(BCFTOOLS_INDEX.out.csi)
     bam_bai_vcf_tbi_repeat_ch = bam_bai_vcf_tbi_ch.join(repeat_id)