diff --git a/subworkflows/local/bam_snp_variant_calling/main.nf b/subworkflows/local/bam_snp_variant_calling/main.nf index 8a92472..a2fa708 100644 --- a/subworkflows/local/bam_snp_variant_calling/main.nf +++ b/subworkflows/local/bam_snp_variant_calling/main.nf @@ -16,7 +16,7 @@ workflow BAM_SNP_VARIANT_CALLING { //deepvariant if (params.tools.split(',').contains('deepvariant')) { deepvar_input_ch = sorted_bam.join(sorted_bai) - .map{meta, bam, bai -> + .map{metadata, bam, bai -> [metadata, bam, bai, intervals] }