From 6f1e327013e052897988c4a0519ed0258acf7df8 Mon Sep 17 00:00:00 2001 From: Luisa Santus Date: Fri, 14 Feb 2025 18:02:28 +0000 Subject: [PATCH 1/2] update docker --- modules/nf-core/tcoffee/align/main.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/nf-core/tcoffee/align/main.nf b/modules/nf-core/tcoffee/align/main.nf index b2ad17c8a6a..f60066c51db 100644 --- a/modules/nf-core/tcoffee/align/main.nf +++ b/modules/nf-core/tcoffee/align/main.nf @@ -5,7 +5,7 @@ process TCOFFEE_ALIGN { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'oras://community.wave.seqera.io/library/t-coffee_tmalign_pigz:f861f2f8f266c2fe': - 'community.wave.seqera.io/library/t-coffee_tmalign_pigz:4d0971cdf12a9460' }" + 'community.wave.seqera.io/library/t-coffee_tmalign_pigz:be7dac2ae6aba380' }" input: tuple val(meta) , path(fasta) From 2b3c65791a9b66bd09105703999b7c07236827b9 Mon Sep 17 00:00:00 2001 From: Luisa Santus Date: Fri, 14 Feb 2025 18:09:06 +0000 Subject: [PATCH 2/2] update docker --- modules/nf-core/tcoffee/align/main.nf | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/modules/nf-core/tcoffee/align/main.nf b/modules/nf-core/tcoffee/align/main.nf index f60066c51db..aae80839658 100644 --- a/modules/nf-core/tcoffee/align/main.nf +++ b/modules/nf-core/tcoffee/align/main.nf @@ -31,6 +31,8 @@ process TCOFFEE_ALIGN { def write_output = compress ? " | pigz -cp ${task.cpus} > ${prefix}.aln.gz" : "" """ export TEMP='./' + export TMP_4_TCOFFEE="./" + export HOME="./" t_coffee -seq ${fasta} \ $tree_args \ $template_args \ @@ -51,6 +53,8 @@ process TCOFFEE_ALIGN { """ # Otherwise, tcoffee will crash when calling its version export TEMP='./' + export TMP_4_TCOFFEE="./" + export HOME="./" touch ${prefix}.aln${compress ? '.gz':''} cat <<-END_VERSIONS > versions.yml