From ee73993c77a68d0c86e6dcb1fb6918fb3bbebdc5 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 13 Nov 2023 16:47:26 -0600 Subject: [PATCH 1/3] feat: Add a first pass script --- .github/conda_env_names.bash | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100755 .github/conda_env_names.bash diff --git a/.github/conda_env_names.bash b/.github/conda_env_names.bash new file mode 100755 index 00000000000..31e1f26bf77 --- /dev/null +++ b/.github/conda_env_names.bash @@ -0,0 +1,12 @@ +#!/usr/bin/env cached-nix-shell +#! nix-shell -p fd yq-go + +# Find all the environment.ymls +ENV_FILES=$(fd "^environment.yml$" modules/) + +for file in $ENV_FILES; do + # Get the "name" field from the meta.yml next to the file + name=$(yq -r '.name' $(dirname "$file")/meta.yml) + # Set the name field in the enviroment.yml at the top of the file + yq -i ".name = \"$name\"" "$file" +done From 6982312a8921b3fd3902bcf36576bc169dc33b60 Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 13 Nov 2023 16:52:07 -0600 Subject: [PATCH 2/3] fix: Just use sed --- .github/conda_env_names.bash | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/conda_env_names.bash b/.github/conda_env_names.bash index 31e1f26bf77..3ad18b4661c 100755 --- a/.github/conda_env_names.bash +++ b/.github/conda_env_names.bash @@ -7,6 +7,6 @@ ENV_FILES=$(fd "^environment.yml$" modules/) for file in $ENV_FILES; do # Get the "name" field from the meta.yml next to the file name=$(yq -r '.name' $(dirname "$file")/meta.yml) - # Set the name field in the enviroment.yml at the top of the file - yq -i ".name = \"$name\"" "$file" + # Add a name field in the enviroment.yml at the top of the file + sed -i "1s|^|name: $name\n|" "$file" done From eed7ea690e6d5ae3b9e82f4e60327dd90a24881a Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Mon, 13 Nov 2023 16:52:20 -0600 Subject: [PATCH 3/3] refactor: Add name: field to every environment.yml --- modules/nf-core/abacas/environment.yml | 1 + modules/nf-core/abricate/run/environment.yml | 1 + modules/nf-core/abricate/summary/environment.yml | 1 + modules/nf-core/abritamr/run/environment.yml | 1 + modules/nf-core/adapterremoval/environment.yml | 1 + modules/nf-core/adapterremovalfixprefix/environment.yml | 1 + modules/nf-core/admixture/environment.yml | 1 + modules/nf-core/affy/justrma/environment.yml | 1 + modules/nf-core/agat/convertspgff2gtf/environment.yml | 1 + modules/nf-core/agat/convertspgff2tsv/environment.yml | 1 + modules/nf-core/agat/convertspgxf2gxf/environment.yml | 1 + modules/nf-core/agat/spstatistics/environment.yml | 1 + modules/nf-core/agat/sqstatbasic/environment.yml | 1 + modules/nf-core/agrvate/environment.yml | 1 + modules/nf-core/allelecounter/environment.yml | 1 + modules/nf-core/ampcombi/environment.yml | 1 + modules/nf-core/ampir/environment.yml | 1 + modules/nf-core/amplify/predict/environment.yml | 1 + modules/nf-core/amps/environment.yml | 1 + modules/nf-core/amrfinderplus/run/environment.yml | 1 + modules/nf-core/amrfinderplus/update/environment.yml | 1 + modules/nf-core/angsd/contamination/environment.yml | 1 + modules/nf-core/angsd/docounts/environment.yml | 1 + modules/nf-core/annotsv/annotsv/environment.yml | 1 + modules/nf-core/annotsv/installannotations/environment.yml | 1 + modules/nf-core/antismash/antismashlite/environment.yml | 1 + .../antismash/antismashlitedownloaddatabases/environment.yml | 1 + modules/nf-core/arcashla/extract/environment.yml | 1 + modules/nf-core/aria2/environment.yml | 1 + modules/nf-core/ariba/getref/environment.yml | 1 + modules/nf-core/ariba/run/environment.yml | 1 + modules/nf-core/arriba/arriba/environment.yml | 1 + modules/nf-core/arriba/download/environment.yml | 1 + modules/nf-core/art/illumina/environment.yml | 1 + modules/nf-core/artic/guppyplex/environment.yml | 1 + modules/nf-core/artic/minion/environment.yml | 1 + modules/nf-core/ascat/environment.yml | 1 + modules/nf-core/ashlar/environment.yml | 1 + 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modules/nf-core/windowmasker/mkcounts/environment.yml | 1 + modules/nf-core/windowmasker/ustat/environment.yml | 1 + modules/nf-core/wisecondorx/convert/environment.yml | 1 + modules/nf-core/wisecondorx/gender/environment.yml | 1 + modules/nf-core/wisecondorx/newref/environment.yml | 1 + modules/nf-core/wisecondorx/predict/environment.yml | 1 + modules/nf-core/yahs/environment.yml | 1 + modules/nf-core/yara/index/environment.yml | 1 + modules/nf-core/yara/mapper/environment.yml | 1 + modules/nf-core/zip/environment.yml | 1 + 1052 files changed, 1052 insertions(+) diff --git a/modules/nf-core/abacas/environment.yml b/modules/nf-core/abacas/environment.yml index ec7c7c2878d..c13791900c5 100644 --- a/modules/nf-core/abacas/environment.yml +++ b/modules/nf-core/abacas/environment.yml @@ -1,3 +1,4 @@ +name: abacas channels: - conda-forge - bioconda diff --git a/modules/nf-core/abricate/run/environment.yml b/modules/nf-core/abricate/run/environment.yml index 845f27e60f8..4b2a1d2a75f 100644 --- a/modules/nf-core/abricate/run/environment.yml +++ b/modules/nf-core/abricate/run/environment.yml @@ -1,3 +1,4 @@ +name: abricate_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/abricate/summary/environment.yml b/modules/nf-core/abricate/summary/environment.yml index 845f27e60f8..8b1e520887e 100644 --- a/modules/nf-core/abricate/summary/environment.yml +++ b/modules/nf-core/abricate/summary/environment.yml @@ -1,3 +1,4 @@ +name: abricate_summary channels: - conda-forge - bioconda diff --git a/modules/nf-core/abritamr/run/environment.yml b/modules/nf-core/abritamr/run/environment.yml index 6306532bd58..674740eb7a8 100644 --- a/modules/nf-core/abritamr/run/environment.yml +++ b/modules/nf-core/abritamr/run/environment.yml @@ -1,3 +1,4 @@ +name: abritamr_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/adapterremoval/environment.yml b/modules/nf-core/adapterremoval/environment.yml index 20d8e952ca1..1737b14b816 100644 --- a/modules/nf-core/adapterremoval/environment.yml +++ b/modules/nf-core/adapterremoval/environment.yml @@ -1,3 +1,4 @@ +name: adapterremoval channels: - conda-forge - bioconda diff --git a/modules/nf-core/adapterremovalfixprefix/environment.yml b/modules/nf-core/adapterremovalfixprefix/environment.yml index ad7b8fd3a2b..807fe64b52e 100644 --- a/modules/nf-core/adapterremovalfixprefix/environment.yml +++ b/modules/nf-core/adapterremovalfixprefix/environment.yml @@ -1,3 +1,4 @@ +name: adapterremovalfixprefix channels: - conda-forge - bioconda diff --git a/modules/nf-core/admixture/environment.yml b/modules/nf-core/admixture/environment.yml index b9e483a65db..ba57cac3011 100644 --- a/modules/nf-core/admixture/environment.yml +++ b/modules/nf-core/admixture/environment.yml @@ -1,3 +1,4 @@ +name: admixture channels: - conda-forge - bioconda diff --git a/modules/nf-core/affy/justrma/environment.yml b/modules/nf-core/affy/justrma/environment.yml index 587ede1e5cb..b0afd895c07 100644 --- a/modules/nf-core/affy/justrma/environment.yml +++ b/modules/nf-core/affy/justrma/environment.yml @@ -1,3 +1,4 @@ +name: affy_justrma channels: - conda-forge - bioconda diff --git a/modules/nf-core/agat/convertspgff2gtf/environment.yml b/modules/nf-core/agat/convertspgff2gtf/environment.yml index a918fdf658f..381154fc19d 100644 --- a/modules/nf-core/agat/convertspgff2gtf/environment.yml +++ b/modules/nf-core/agat/convertspgff2gtf/environment.yml @@ -1,3 +1,4 @@ +name: agat_convertspgff2gtf channels: - conda-forge - bioconda diff --git a/modules/nf-core/agat/convertspgff2tsv/environment.yml b/modules/nf-core/agat/convertspgff2tsv/environment.yml index 9ca0ea28a5f..b5fdf3dbbad 100644 --- a/modules/nf-core/agat/convertspgff2tsv/environment.yml +++ b/modules/nf-core/agat/convertspgff2tsv/environment.yml @@ -1,3 +1,4 @@ +name: agat_convertspgff2tsv channels: - conda-forge - bioconda diff --git a/modules/nf-core/agat/convertspgxf2gxf/environment.yml b/modules/nf-core/agat/convertspgxf2gxf/environment.yml index a918fdf658f..e3de24d786b 100644 --- a/modules/nf-core/agat/convertspgxf2gxf/environment.yml +++ b/modules/nf-core/agat/convertspgxf2gxf/environment.yml @@ -1,3 +1,4 @@ +name: agat_convertspgxf2gxf channels: - conda-forge - bioconda diff --git a/modules/nf-core/agat/spstatistics/environment.yml b/modules/nf-core/agat/spstatistics/environment.yml index a918fdf658f..83518284197 100644 --- a/modules/nf-core/agat/spstatistics/environment.yml +++ b/modules/nf-core/agat/spstatistics/environment.yml @@ -1,3 +1,4 @@ +name: agat_spstatistics channels: - conda-forge - bioconda diff --git a/modules/nf-core/agat/sqstatbasic/environment.yml b/modules/nf-core/agat/sqstatbasic/environment.yml index a918fdf658f..81e3808a699 100644 --- a/modules/nf-core/agat/sqstatbasic/environment.yml +++ b/modules/nf-core/agat/sqstatbasic/environment.yml @@ -1,3 +1,4 @@ +name: agat_sqstatbasic channels: - conda-forge - bioconda diff --git a/modules/nf-core/agrvate/environment.yml b/modules/nf-core/agrvate/environment.yml index d28fc4f60b4..4e43c338523 100644 --- a/modules/nf-core/agrvate/environment.yml +++ b/modules/nf-core/agrvate/environment.yml @@ -1,3 +1,4 @@ +name: agrvate channels: - conda-forge - bioconda diff --git a/modules/nf-core/allelecounter/environment.yml b/modules/nf-core/allelecounter/environment.yml index 10fa7f6f218..b503525445c 100644 --- a/modules/nf-core/allelecounter/environment.yml +++ b/modules/nf-core/allelecounter/environment.yml @@ -1,3 +1,4 @@ +name: allelecounter channels: - conda-forge - bioconda diff --git a/modules/nf-core/ampcombi/environment.yml b/modules/nf-core/ampcombi/environment.yml index 32e177866ff..a388a034ea6 100644 --- a/modules/nf-core/ampcombi/environment.yml +++ b/modules/nf-core/ampcombi/environment.yml @@ -1,3 +1,4 @@ +name: ampcombi channels: - conda-forge - bioconda diff --git a/modules/nf-core/ampir/environment.yml b/modules/nf-core/ampir/environment.yml index 8e55db05fcd..8cb475d101f 100644 --- a/modules/nf-core/ampir/environment.yml +++ b/modules/nf-core/ampir/environment.yml @@ -1,3 +1,4 @@ +name: ampir channels: - conda-forge - bioconda diff --git a/modules/nf-core/amplify/predict/environment.yml b/modules/nf-core/amplify/predict/environment.yml index e674fc1ac0e..56b0ab6da8b 100644 --- a/modules/nf-core/amplify/predict/environment.yml +++ b/modules/nf-core/amplify/predict/environment.yml @@ -1,3 +1,4 @@ +name: amplify_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/amps/environment.yml b/modules/nf-core/amps/environment.yml index 7783dd944f7..4cd15476174 100644 --- a/modules/nf-core/amps/environment.yml +++ b/modules/nf-core/amps/environment.yml @@ -1,3 +1,4 @@ +name: amps channels: - conda-forge - bioconda diff --git a/modules/nf-core/amrfinderplus/run/environment.yml b/modules/nf-core/amrfinderplus/run/environment.yml index ee19ed01c63..b5e3b4fcfdd 100644 --- a/modules/nf-core/amrfinderplus/run/environment.yml +++ b/modules/nf-core/amrfinderplus/run/environment.yml @@ -1,3 +1,4 @@ +name: amrfinderplus_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/amrfinderplus/update/environment.yml b/modules/nf-core/amrfinderplus/update/environment.yml index ee19ed01c63..3700184502c 100644 --- a/modules/nf-core/amrfinderplus/update/environment.yml +++ b/modules/nf-core/amrfinderplus/update/environment.yml @@ -1,3 +1,4 @@ +name: amrfinderplus_update channels: - conda-forge - bioconda diff --git a/modules/nf-core/angsd/contamination/environment.yml b/modules/nf-core/angsd/contamination/environment.yml index 1f74b5b5e81..57a57276118 100644 --- a/modules/nf-core/angsd/contamination/environment.yml +++ b/modules/nf-core/angsd/contamination/environment.yml @@ -1,3 +1,4 @@ +name: angsd_contamination channels: - conda-forge - bioconda diff --git a/modules/nf-core/angsd/docounts/environment.yml b/modules/nf-core/angsd/docounts/environment.yml index aef3031c404..ebaa9ed2ca6 100644 --- a/modules/nf-core/angsd/docounts/environment.yml +++ b/modules/nf-core/angsd/docounts/environment.yml @@ -1,3 +1,4 @@ +name: angsd_docounts channels: - conda-forge - bioconda diff --git a/modules/nf-core/annotsv/annotsv/environment.yml b/modules/nf-core/annotsv/annotsv/environment.yml index b19c8ed6f74..05516dddb48 100644 --- a/modules/nf-core/annotsv/annotsv/environment.yml +++ b/modules/nf-core/annotsv/annotsv/environment.yml @@ -1,3 +1,4 @@ +name: annotsv_annotsv channels: - conda-forge - bioconda diff --git a/modules/nf-core/annotsv/installannotations/environment.yml b/modules/nf-core/annotsv/installannotations/environment.yml index b19c8ed6f74..69d2f7a7afc 100644 --- a/modules/nf-core/annotsv/installannotations/environment.yml +++ b/modules/nf-core/annotsv/installannotations/environment.yml @@ -1,3 +1,4 @@ +name: annotsv_installannotations channels: - conda-forge - bioconda diff --git a/modules/nf-core/antismash/antismashlite/environment.yml b/modules/nf-core/antismash/antismashlite/environment.yml index ced2ff17375..76de944b0c2 100644 --- a/modules/nf-core/antismash/antismashlite/environment.yml +++ b/modules/nf-core/antismash/antismashlite/environment.yml @@ -1,3 +1,4 @@ +name: antismash_antismashlite channels: - conda-forge - bioconda diff --git a/modules/nf-core/antismash/antismashlitedownloaddatabases/environment.yml b/modules/nf-core/antismash/antismashlitedownloaddatabases/environment.yml index ced2ff17375..e6288d56f18 100644 --- a/modules/nf-core/antismash/antismashlitedownloaddatabases/environment.yml +++ b/modules/nf-core/antismash/antismashlitedownloaddatabases/environment.yml @@ -1,3 +1,4 @@ +name: antismash_antismashlitedownloaddatabases channels: - conda-forge - bioconda diff --git a/modules/nf-core/arcashla/extract/environment.yml b/modules/nf-core/arcashla/extract/environment.yml index 51644f687f8..b5789655ec8 100644 --- a/modules/nf-core/arcashla/extract/environment.yml +++ b/modules/nf-core/arcashla/extract/environment.yml @@ -1,3 +1,4 @@ +name: arcashla_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/aria2/environment.yml b/modules/nf-core/aria2/environment.yml index 341b6378f8d..5dc58a07208 100644 --- a/modules/nf-core/aria2/environment.yml +++ b/modules/nf-core/aria2/environment.yml @@ -1,3 +1,4 @@ +name: aria2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/ariba/getref/environment.yml b/modules/nf-core/ariba/getref/environment.yml index 0ed16f1118a..cc886d28876 100644 --- a/modules/nf-core/ariba/getref/environment.yml +++ b/modules/nf-core/ariba/getref/environment.yml @@ -1,3 +1,4 @@ +name: ariba_getref channels: - conda-forge - bioconda diff --git a/modules/nf-core/ariba/run/environment.yml b/modules/nf-core/ariba/run/environment.yml index 0ed16f1118a..f161a2be9b6 100644 --- a/modules/nf-core/ariba/run/environment.yml +++ b/modules/nf-core/ariba/run/environment.yml @@ -1,3 +1,4 @@ +name: ariba_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/arriba/arriba/environment.yml b/modules/nf-core/arriba/arriba/environment.yml index 3a8353c02e2..8494c8c03d6 100644 --- a/modules/nf-core/arriba/arriba/environment.yml +++ b/modules/nf-core/arriba/arriba/environment.yml @@ -1,3 +1,4 @@ +name: arriba_arriba channels: - conda-forge - bioconda diff --git a/modules/nf-core/arriba/download/environment.yml b/modules/nf-core/arriba/download/environment.yml index 3a8353c02e2..dc7d3bf9960 100644 --- a/modules/nf-core/arriba/download/environment.yml +++ b/modules/nf-core/arriba/download/environment.yml @@ -1,3 +1,4 @@ +name: arriba_download channels: - conda-forge - bioconda diff --git a/modules/nf-core/art/illumina/environment.yml b/modules/nf-core/art/illumina/environment.yml index 7f18cf36a0d..bf446862493 100644 --- a/modules/nf-core/art/illumina/environment.yml +++ b/modules/nf-core/art/illumina/environment.yml @@ -1,3 +1,4 @@ +name: art_illumina channels: - conda-forge - bioconda diff --git a/modules/nf-core/artic/guppyplex/environment.yml b/modules/nf-core/artic/guppyplex/environment.yml index b424bff9e43..19176850c7e 100644 --- a/modules/nf-core/artic/guppyplex/environment.yml +++ b/modules/nf-core/artic/guppyplex/environment.yml @@ -1,3 +1,4 @@ +name: artic_guppyplex channels: - conda-forge - bioconda diff --git a/modules/nf-core/artic/minion/environment.yml b/modules/nf-core/artic/minion/environment.yml index b424bff9e43..5123f82c1e7 100644 --- a/modules/nf-core/artic/minion/environment.yml +++ b/modules/nf-core/artic/minion/environment.yml @@ -1,3 +1,4 @@ +name: artic_minion channels: - conda-forge - bioconda diff --git a/modules/nf-core/ascat/environment.yml b/modules/nf-core/ascat/environment.yml index 6708ce86a84..52935f09782 100644 --- a/modules/nf-core/ascat/environment.yml +++ b/modules/nf-core/ascat/environment.yml @@ -1,3 +1,4 @@ +name: ascat channels: - conda-forge - bioconda diff --git a/modules/nf-core/ashlar/environment.yml b/modules/nf-core/ashlar/environment.yml index 0145ac0339a..75ddeb4ddb1 100644 --- a/modules/nf-core/ashlar/environment.yml +++ b/modules/nf-core/ashlar/environment.yml @@ -1,3 +1,4 @@ +name: ashlar channels: - conda-forge - bioconda diff --git a/modules/nf-core/assemblyscan/environment.yml b/modules/nf-core/assemblyscan/environment.yml index 21ab4c67ee9..34a02bc7934 100644 --- a/modules/nf-core/assemblyscan/environment.yml +++ b/modules/nf-core/assemblyscan/environment.yml @@ -1,3 +1,4 @@ +name: assemblyscan channels: - conda-forge - bioconda diff --git a/modules/nf-core/ataqv/ataqv/environment.yml b/modules/nf-core/ataqv/ataqv/environment.yml index 94bb1b6ffa7..a91f6d9bc6e 100644 --- a/modules/nf-core/ataqv/ataqv/environment.yml +++ b/modules/nf-core/ataqv/ataqv/environment.yml @@ -1,3 +1,4 @@ +name: ataqv_ataqv channels: - conda-forge - bioconda diff --git a/modules/nf-core/ataqv/mkarv/environment.yml b/modules/nf-core/ataqv/mkarv/environment.yml index 94bb1b6ffa7..28ff2f69d54 100644 --- a/modules/nf-core/ataqv/mkarv/environment.yml +++ b/modules/nf-core/ataqv/mkarv/environment.yml @@ -1,3 +1,4 @@ +name: ataqv_mkarv channels: - conda-forge - bioconda diff --git a/modules/nf-core/atlas/call/environment.yml b/modules/nf-core/atlas/call/environment.yml index f9f28f47b47..c872fe05434 100644 --- a/modules/nf-core/atlas/call/environment.yml +++ b/modules/nf-core/atlas/call/environment.yml @@ -1,3 +1,4 @@ +name: atlas_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/atlas/pmd/environment.yml b/modules/nf-core/atlas/pmd/environment.yml index f9f28f47b47..24ba39f5835 100644 --- a/modules/nf-core/atlas/pmd/environment.yml +++ b/modules/nf-core/atlas/pmd/environment.yml @@ -1,3 +1,4 @@ +name: atlas_pmd channels: - conda-forge - bioconda diff --git a/modules/nf-core/atlas/recal/environment.yml b/modules/nf-core/atlas/recal/environment.yml index f9f28f47b47..19265746010 100644 --- a/modules/nf-core/atlas/recal/environment.yml +++ b/modules/nf-core/atlas/recal/environment.yml @@ -1,3 +1,4 @@ +name: atlas_recal channels: - conda-forge - bioconda diff --git a/modules/nf-core/atlas/splitmerge/environment.yml b/modules/nf-core/atlas/splitmerge/environment.yml index f9f28f47b47..5c43cec2672 100644 --- a/modules/nf-core/atlas/splitmerge/environment.yml +++ b/modules/nf-core/atlas/splitmerge/environment.yml @@ -1,3 +1,4 @@ +name: atlas_splitmerge channels: - conda-forge - bioconda diff --git a/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/environment.yml b/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/environment.yml index 67ae588eb3d..67d88a4c0d5 100644 --- a/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/environment.yml +++ b/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/environment.yml @@ -1,3 +1,4 @@ +name: atlasgeneannotationmanipulation_gtf2featureannotation channels: - conda-forge - bioconda diff --git a/modules/nf-core/authentict/deam2cont/environment.yml b/modules/nf-core/authentict/deam2cont/environment.yml index 3e82f873dc9..90cf797e6ee 100644 --- a/modules/nf-core/authentict/deam2cont/environment.yml +++ b/modules/nf-core/authentict/deam2cont/environment.yml @@ -1,3 +1,4 @@ +name: authentict_deam2cont channels: - conda-forge - bioconda diff --git a/modules/nf-core/backsub/environment.yml b/modules/nf-core/backsub/environment.yml index bcd3a8b1c63..665ff3fcbec 100644 --- a/modules/nf-core/backsub/environment.yml +++ b/modules/nf-core/backsub/environment.yml @@ -1,3 +1,4 @@ +name: backsub channels: - conda-forge - bioconda diff --git a/modules/nf-core/bacphlip/environment.yml b/modules/nf-core/bacphlip/environment.yml index 625d9bac613..943d2f66098 100644 --- a/modules/nf-core/bacphlip/environment.yml +++ b/modules/nf-core/bacphlip/environment.yml @@ -1,3 +1,4 @@ +name: bacphlip channels: - conda-forge - bioconda diff --git a/modules/nf-core/bakta/bakta/environment.yml b/modules/nf-core/bakta/bakta/environment.yml index 102348df442..07a11d860e2 100644 --- a/modules/nf-core/bakta/bakta/environment.yml +++ b/modules/nf-core/bakta/bakta/environment.yml @@ -1,3 +1,4 @@ +name: bakta_bakta channels: - conda-forge - bioconda diff --git a/modules/nf-core/bakta/baktadbdownload/environment.yml b/modules/nf-core/bakta/baktadbdownload/environment.yml index 102348df442..081364655ff 100644 --- a/modules/nf-core/bakta/baktadbdownload/environment.yml +++ b/modules/nf-core/bakta/baktadbdownload/environment.yml @@ -1,3 +1,4 @@ +name: bakta_baktadbdownload channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamaligncleaner/environment.yml b/modules/nf-core/bamaligncleaner/environment.yml index 109123ba0f6..960670c2e4f 100644 --- a/modules/nf-core/bamaligncleaner/environment.yml +++ b/modules/nf-core/bamaligncleaner/environment.yml @@ -1,3 +1,4 @@ +name: bamaligncleaner channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamcmp/environment.yml b/modules/nf-core/bamcmp/environment.yml index c9c4c394156..e7b1dbb060f 100644 --- a/modules/nf-core/bamcmp/environment.yml +++ b/modules/nf-core/bamcmp/environment.yml @@ -1,3 +1,4 @@ +name: bamcmp channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamtools/convert/environment.yml b/modules/nf-core/bamtools/convert/environment.yml index 026841520ac..1407c34a8c6 100644 --- a/modules/nf-core/bamtools/convert/environment.yml +++ b/modules/nf-core/bamtools/convert/environment.yml @@ -1,3 +1,4 @@ +name: bamtools_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamtools/split/environment.yml b/modules/nf-core/bamtools/split/environment.yml index 026841520ac..995d25ee86a 100644 --- a/modules/nf-core/bamtools/split/environment.yml +++ b/modules/nf-core/bamtools/split/environment.yml @@ -1,3 +1,4 @@ +name: bamtools_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamtools/stats/environment.yml b/modules/nf-core/bamtools/stats/environment.yml index 026841520ac..a32c319b55a 100644 --- a/modules/nf-core/bamtools/stats/environment.yml +++ b/modules/nf-core/bamtools/stats/environment.yml @@ -1,3 +1,4 @@ +name: bamtools_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/bamutil/trimbam/environment.yml b/modules/nf-core/bamutil/trimbam/environment.yml index bd822905a80..d9b10c2a446 100644 --- a/modules/nf-core/bamutil/trimbam/environment.yml +++ b/modules/nf-core/bamutil/trimbam/environment.yml @@ -1,3 +1,4 @@ +name: bamutil_trimbam channels: - conda-forge - bioconda diff --git a/modules/nf-core/bandage/image/environment.yml b/modules/nf-core/bandage/image/environment.yml index a759500cb7d..61558105e51 100644 --- a/modules/nf-core/bandage/image/environment.yml +++ b/modules/nf-core/bandage/image/environment.yml @@ -1,3 +1,4 @@ +name: bandage_image channels: - conda-forge - bioconda diff --git a/modules/nf-core/barrnap/environment.yml b/modules/nf-core/barrnap/environment.yml index 6fd53f70946..28436cf1390 100644 --- a/modules/nf-core/barrnap/environment.yml +++ b/modules/nf-core/barrnap/environment.yml @@ -1,3 +1,4 @@ +name: barrnap channels: - conda-forge - bioconda diff --git a/modules/nf-core/bases2fastq/environment.yml b/modules/nf-core/bases2fastq/environment.yml index bcd3a8b1c63..80d0467107e 100644 --- a/modules/nf-core/bases2fastq/environment.yml +++ b/modules/nf-core/bases2fastq/environment.yml @@ -1,3 +1,4 @@ +name: bases2fastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/basicpy/environment.yml b/modules/nf-core/basicpy/environment.yml index bcd3a8b1c63..48bb0990a05 100644 --- a/modules/nf-core/basicpy/environment.yml +++ b/modules/nf-core/basicpy/environment.yml @@ -1,3 +1,4 @@ +name: basicpy channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/align/environment.yml b/modules/nf-core/bbmap/align/environment.yml index 693af269f2b..96c4c32cbce 100644 --- a/modules/nf-core/bbmap/align/environment.yml +++ b/modules/nf-core/bbmap/align/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/bbduk/environment.yml b/modules/nf-core/bbmap/bbduk/environment.yml index 59bc4662a5d..1221474cd9b 100644 --- a/modules/nf-core/bbmap/bbduk/environment.yml +++ b/modules/nf-core/bbmap/bbduk/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_bbduk channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/bbnorm/environment.yml b/modules/nf-core/bbmap/bbnorm/environment.yml index 09f517f96c6..8b97ffdad59 100644 --- a/modules/nf-core/bbmap/bbnorm/environment.yml +++ b/modules/nf-core/bbmap/bbnorm/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_bbnorm channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/bbsplit/environment.yml b/modules/nf-core/bbmap/bbsplit/environment.yml index 59bc4662a5d..4c6db627649 100644 --- a/modules/nf-core/bbmap/bbsplit/environment.yml +++ b/modules/nf-core/bbmap/bbsplit/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_bbsplit channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/clumpify/environment.yml b/modules/nf-core/bbmap/clumpify/environment.yml index 59bc4662a5d..bef6899e7b2 100644 --- a/modules/nf-core/bbmap/clumpify/environment.yml +++ b/modules/nf-core/bbmap/clumpify/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_clumpify channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/index/environment.yml b/modules/nf-core/bbmap/index/environment.yml index 59bc4662a5d..515f8d214df 100644 --- a/modules/nf-core/bbmap/index/environment.yml +++ b/modules/nf-core/bbmap/index/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/pileup/environment.yml b/modules/nf-core/bbmap/pileup/environment.yml index 693af269f2b..63767f5f0a8 100644 --- a/modules/nf-core/bbmap/pileup/environment.yml +++ b/modules/nf-core/bbmap/pileup/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_pileup channels: - conda-forge - bioconda diff --git a/modules/nf-core/bbmap/sendsketch/environment.yml b/modules/nf-core/bbmap/sendsketch/environment.yml index 59bc4662a5d..55f54f5c60e 100644 --- a/modules/nf-core/bbmap/sendsketch/environment.yml +++ b/modules/nf-core/bbmap/sendsketch/environment.yml @@ -1,3 +1,4 @@ +name: bbmap_sendsketch channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/annotate/environment.yml b/modules/nf-core/bcftools/annotate/environment.yml index 57631f42ea4..273ffff4c20 100644 --- a/modules/nf-core/bcftools/annotate/environment.yml +++ b/modules/nf-core/bcftools/annotate/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/call/environment.yml b/modules/nf-core/bcftools/call/environment.yml index 57631f42ea4..23fb23dcbe4 100644 --- a/modules/nf-core/bcftools/call/environment.yml +++ b/modules/nf-core/bcftools/call/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/concat/environment.yml b/modules/nf-core/bcftools/concat/environment.yml index 57631f42ea4..be2539990b3 100644 --- a/modules/nf-core/bcftools/concat/environment.yml +++ b/modules/nf-core/bcftools/concat/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_concat channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/consensus/environment.yml b/modules/nf-core/bcftools/consensus/environment.yml index 57631f42ea4..139f46c2cd3 100644 --- a/modules/nf-core/bcftools/consensus/environment.yml +++ b/modules/nf-core/bcftools/consensus/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_consensus channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/convert/environment.yml b/modules/nf-core/bcftools/convert/environment.yml index 57631f42ea4..9e0cf70251c 100644 --- a/modules/nf-core/bcftools/convert/environment.yml +++ b/modules/nf-core/bcftools/convert/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/filter/environment.yml b/modules/nf-core/bcftools/filter/environment.yml index 57631f42ea4..8af7f5ea5f2 100644 --- a/modules/nf-core/bcftools/filter/environment.yml +++ b/modules/nf-core/bcftools/filter/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/index/environment.yml b/modules/nf-core/bcftools/index/environment.yml index 57631f42ea4..0dc83b27b95 100644 --- a/modules/nf-core/bcftools/index/environment.yml +++ b/modules/nf-core/bcftools/index/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/isec/environment.yml b/modules/nf-core/bcftools/isec/environment.yml index 57631f42ea4..dd3995bcf96 100644 --- a/modules/nf-core/bcftools/isec/environment.yml +++ b/modules/nf-core/bcftools/isec/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_isec channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/merge/environment.yml b/modules/nf-core/bcftools/merge/environment.yml index 57631f42ea4..a633bd8d40e 100644 --- a/modules/nf-core/bcftools/merge/environment.yml +++ b/modules/nf-core/bcftools/merge/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/mpileup/environment.yml b/modules/nf-core/bcftools/mpileup/environment.yml index 57631f42ea4..346d187fec7 100644 --- a/modules/nf-core/bcftools/mpileup/environment.yml +++ b/modules/nf-core/bcftools/mpileup/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_mpileup channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/norm/environment.yml b/modules/nf-core/bcftools/norm/environment.yml index 57631f42ea4..74e94f29684 100644 --- a/modules/nf-core/bcftools/norm/environment.yml +++ b/modules/nf-core/bcftools/norm/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_norm channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/pluginscatter/environment.yml b/modules/nf-core/bcftools/pluginscatter/environment.yml index 57631f42ea4..079ff8ce36e 100644 --- a/modules/nf-core/bcftools/pluginscatter/environment.yml +++ b/modules/nf-core/bcftools/pluginscatter/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_pluginscatter channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/pluginsplit/environment.yml b/modules/nf-core/bcftools/pluginsplit/environment.yml index 57631f42ea4..3b0616a0636 100644 --- a/modules/nf-core/bcftools/pluginsplit/environment.yml +++ b/modules/nf-core/bcftools/pluginsplit/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_pluginsplit channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/query/environment.yml b/modules/nf-core/bcftools/query/environment.yml index 57631f42ea4..0d7953c7c2a 100644 --- a/modules/nf-core/bcftools/query/environment.yml +++ b/modules/nf-core/bcftools/query/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_query channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/reheader/environment.yml b/modules/nf-core/bcftools/reheader/environment.yml index 57631f42ea4..8019631e024 100644 --- a/modules/nf-core/bcftools/reheader/environment.yml +++ b/modules/nf-core/bcftools/reheader/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_reheader channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/roh/environment.yml b/modules/nf-core/bcftools/roh/environment.yml index 57631f42ea4..c8b66a0647b 100644 --- a/modules/nf-core/bcftools/roh/environment.yml +++ b/modules/nf-core/bcftools/roh/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_roh channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/sort/environment.yml b/modules/nf-core/bcftools/sort/environment.yml index 57631f42ea4..26d3644501b 100644 --- a/modules/nf-core/bcftools/sort/environment.yml +++ b/modules/nf-core/bcftools/sort/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/split/environment.yml b/modules/nf-core/bcftools/split/environment.yml index 57631f42ea4..b5c2c3b7bd5 100644 --- a/modules/nf-core/bcftools/split/environment.yml +++ b/modules/nf-core/bcftools/split/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/stats/environment.yml b/modules/nf-core/bcftools/stats/environment.yml index 57631f42ea4..a937a10a7f7 100644 --- a/modules/nf-core/bcftools/stats/environment.yml +++ b/modules/nf-core/bcftools/stats/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcftools/view/environment.yml b/modules/nf-core/bcftools/view/environment.yml index 57631f42ea4..1871829fec9 100644 --- a/modules/nf-core/bcftools/view/environment.yml +++ b/modules/nf-core/bcftools/view/environment.yml @@ -1,3 +1,4 @@ +name: bcftools_view channels: - conda-forge - bioconda diff --git a/modules/nf-core/bcl2fastq/environment.yml b/modules/nf-core/bcl2fastq/environment.yml index bcd3a8b1c63..17e01d9422b 100644 --- a/modules/nf-core/bcl2fastq/environment.yml +++ b/modules/nf-core/bcl2fastq/environment.yml @@ -1,3 +1,4 @@ +name: bcl2fastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/bclconvert/environment.yml b/modules/nf-core/bclconvert/environment.yml index bcd3a8b1c63..cc1210c2e0e 100644 --- a/modules/nf-core/bclconvert/environment.yml +++ b/modules/nf-core/bclconvert/environment.yml @@ -1,3 +1,4 @@ +name: bclconvert channels: - conda-forge - bioconda diff --git a/modules/nf-core/beagle5/beagle/environment.yml b/modules/nf-core/beagle5/beagle/environment.yml index b78ec63a0d4..872f78c404b 100644 --- a/modules/nf-core/beagle5/beagle/environment.yml +++ b/modules/nf-core/beagle5/beagle/environment.yml @@ -1,3 +1,4 @@ +name: beagle5_beagle channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/bamtobed/environment.yml b/modules/nf-core/bedtools/bamtobed/environment.yml index ee82094076b..874998e99d8 100644 --- a/modules/nf-core/bedtools/bamtobed/environment.yml +++ b/modules/nf-core/bedtools/bamtobed/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_bamtobed channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/closest/environment.yml b/modules/nf-core/bedtools/closest/environment.yml index 55ce727a79f..bec1719eafc 100644 --- a/modules/nf-core/bedtools/closest/environment.yml +++ b/modules/nf-core/bedtools/closest/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_closest channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/complement/environment.yml b/modules/nf-core/bedtools/complement/environment.yml index 55ce727a79f..8e5924171b9 100644 --- a/modules/nf-core/bedtools/complement/environment.yml +++ b/modules/nf-core/bedtools/complement/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_complement channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/coverage/environment.yml b/modules/nf-core/bedtools/coverage/environment.yml index 55ce727a79f..53a3b4c852d 100644 --- a/modules/nf-core/bedtools/coverage/environment.yml +++ b/modules/nf-core/bedtools/coverage/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_coverage channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/genomecov/environment.yml b/modules/nf-core/bedtools/genomecov/environment.yml index ee82094076b..574c267114f 100644 --- a/modules/nf-core/bedtools/genomecov/environment.yml +++ b/modules/nf-core/bedtools/genomecov/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_genomecov channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/getfasta/environment.yml b/modules/nf-core/bedtools/getfasta/environment.yml index 55ce727a79f..06131c3a3a8 100644 --- a/modules/nf-core/bedtools/getfasta/environment.yml +++ b/modules/nf-core/bedtools/getfasta/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_getfasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/groupby/environment.yml b/modules/nf-core/bedtools/groupby/environment.yml index ee82094076b..28072cc9a73 100644 --- a/modules/nf-core/bedtools/groupby/environment.yml +++ b/modules/nf-core/bedtools/groupby/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_groupby channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/intersect/environment.yml b/modules/nf-core/bedtools/intersect/environment.yml index 55ce727a79f..f8bb5fb0294 100644 --- a/modules/nf-core/bedtools/intersect/environment.yml +++ b/modules/nf-core/bedtools/intersect/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_intersect channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/jaccard/environment.yml b/modules/nf-core/bedtools/jaccard/environment.yml index 55ce727a79f..6b121c4b323 100644 --- a/modules/nf-core/bedtools/jaccard/environment.yml +++ b/modules/nf-core/bedtools/jaccard/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_jaccard channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/makewindows/environment.yml b/modules/nf-core/bedtools/makewindows/environment.yml index 55ce727a79f..30ce7e4123f 100644 --- a/modules/nf-core/bedtools/makewindows/environment.yml +++ b/modules/nf-core/bedtools/makewindows/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_makewindows channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/map/environment.yml b/modules/nf-core/bedtools/map/environment.yml index ee82094076b..5c96d3654a1 100644 --- a/modules/nf-core/bedtools/map/environment.yml +++ b/modules/nf-core/bedtools/map/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_map channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/maskfasta/environment.yml b/modules/nf-core/bedtools/maskfasta/environment.yml index 55ce727a79f..a77a0059788 100644 --- a/modules/nf-core/bedtools/maskfasta/environment.yml +++ b/modules/nf-core/bedtools/maskfasta/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_maskfasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/merge/environment.yml b/modules/nf-core/bedtools/merge/environment.yml index ee82094076b..961e602c8f0 100644 --- a/modules/nf-core/bedtools/merge/environment.yml +++ b/modules/nf-core/bedtools/merge/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/multiinter/environment.yml b/modules/nf-core/bedtools/multiinter/environment.yml index ee82094076b..acb93bf386a 100644 --- a/modules/nf-core/bedtools/multiinter/environment.yml +++ b/modules/nf-core/bedtools/multiinter/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_multiinter channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/shift/environment.yml b/modules/nf-core/bedtools/shift/environment.yml index 55ce727a79f..ff859b4bc6b 100644 --- a/modules/nf-core/bedtools/shift/environment.yml +++ b/modules/nf-core/bedtools/shift/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_shift channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/slop/environment.yml b/modules/nf-core/bedtools/slop/environment.yml index ee82094076b..58f37a83c20 100644 --- a/modules/nf-core/bedtools/slop/environment.yml +++ b/modules/nf-core/bedtools/slop/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_slop channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/sort/environment.yml b/modules/nf-core/bedtools/sort/environment.yml index ee82094076b..a233c482a61 100644 --- a/modules/nf-core/bedtools/sort/environment.yml +++ b/modules/nf-core/bedtools/sort/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/split/environment.yml b/modules/nf-core/bedtools/split/environment.yml index 55ce727a79f..54baaee248f 100644 --- a/modules/nf-core/bedtools/split/environment.yml +++ b/modules/nf-core/bedtools/split/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/subtract/environment.yml b/modules/nf-core/bedtools/subtract/environment.yml index 55ce727a79f..b869a4f528b 100644 --- a/modules/nf-core/bedtools/subtract/environment.yml +++ b/modules/nf-core/bedtools/subtract/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_subtract channels: - conda-forge - bioconda diff --git a/modules/nf-core/bedtools/unionbedg/environment.yml b/modules/nf-core/bedtools/unionbedg/environment.yml index ee82094076b..895a72f4bdc 100644 --- a/modules/nf-core/bedtools/unionbedg/environment.yml +++ b/modules/nf-core/bedtools/unionbedg/environment.yml @@ -1,3 +1,4 @@ +name: bedtools_unionbedg channels: - conda-forge - bioconda diff --git a/modules/nf-core/bioawk/environment.yml b/modules/nf-core/bioawk/environment.yml index 33315d10b04..5fdfd4176e9 100644 --- a/modules/nf-core/bioawk/environment.yml +++ b/modules/nf-core/bioawk/environment.yml @@ -1,3 +1,4 @@ +name: bioawk channels: - conda-forge - bioconda diff --git a/modules/nf-core/biobambam/bammarkduplicates2/environment.yml b/modules/nf-core/biobambam/bammarkduplicates2/environment.yml index 7b9fcb94df2..76e81cb0af6 100644 --- a/modules/nf-core/biobambam/bammarkduplicates2/environment.yml +++ b/modules/nf-core/biobambam/bammarkduplicates2/environment.yml @@ -1,3 +1,4 @@ +name: biobambam_bammarkduplicates2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/biobambam/bammerge/environment.yml b/modules/nf-core/biobambam/bammerge/environment.yml index 7b9fcb94df2..6eb5eee8cfb 100644 --- a/modules/nf-core/biobambam/bammerge/environment.yml +++ b/modules/nf-core/biobambam/bammerge/environment.yml @@ -1,3 +1,4 @@ +name: biobambam_bammerge channels: - conda-forge - bioconda diff --git a/modules/nf-core/biobambam/bamsormadup/environment.yml b/modules/nf-core/biobambam/bamsormadup/environment.yml index 7b9fcb94df2..4adac68be0b 100644 --- a/modules/nf-core/biobambam/bamsormadup/environment.yml +++ b/modules/nf-core/biobambam/bamsormadup/environment.yml @@ -1,3 +1,4 @@ +name: biobambam_bamsormadup channels: - conda-forge - bioconda diff --git a/modules/nf-core/biohansel/environment.yml b/modules/nf-core/biohansel/environment.yml index d0f03a80b02..7ef2a3dc799 100644 --- a/modules/nf-core/biohansel/environment.yml +++ b/modules/nf-core/biohansel/environment.yml @@ -1,3 +1,4 @@ +name: biohansel channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/align/environment.yml b/modules/nf-core/biscuit/align/environment.yml index 9e779460b3a..90e26ee680e 100644 --- a/modules/nf-core/biscuit/align/environment.yml +++ b/modules/nf-core/biscuit/align/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/biscuitblaster/environment.yml b/modules/nf-core/biscuit/biscuitblaster/environment.yml index 71d24209daa..1cf1fbc0f2e 100644 --- a/modules/nf-core/biscuit/biscuitblaster/environment.yml +++ b/modules/nf-core/biscuit/biscuitblaster/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_blaster channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/bsconv/environment.yml b/modules/nf-core/biscuit/bsconv/environment.yml index 5209c13bfe6..937dbadfba0 100644 --- a/modules/nf-core/biscuit/bsconv/environment.yml +++ b/modules/nf-core/biscuit/bsconv/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_bsconv channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/epiread/environment.yml b/modules/nf-core/biscuit/epiread/environment.yml index 9e779460b3a..2d7915474bd 100644 --- a/modules/nf-core/biscuit/epiread/environment.yml +++ b/modules/nf-core/biscuit/epiread/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_epiread channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/index/environment.yml b/modules/nf-core/biscuit/index/environment.yml index 5209c13bfe6..66b9fde82f6 100644 --- a/modules/nf-core/biscuit/index/environment.yml +++ b/modules/nf-core/biscuit/index/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/mergecg/environment.yml b/modules/nf-core/biscuit/mergecg/environment.yml index 9e779460b3a..eb9d77b4a1f 100644 --- a/modules/nf-core/biscuit/mergecg/environment.yml +++ b/modules/nf-core/biscuit/mergecg/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_mergecg channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/pileup/environment.yml b/modules/nf-core/biscuit/pileup/environment.yml index 9e779460b3a..60132b4def8 100644 --- a/modules/nf-core/biscuit/pileup/environment.yml +++ b/modules/nf-core/biscuit/pileup/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_pileup channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/qc/environment.yml b/modules/nf-core/biscuit/qc/environment.yml index 5209c13bfe6..9e9f3a26b5f 100644 --- a/modules/nf-core/biscuit/qc/environment.yml +++ b/modules/nf-core/biscuit/qc/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_qc channels: - conda-forge - bioconda diff --git a/modules/nf-core/biscuit/vcf2bed/environment.yml b/modules/nf-core/biscuit/vcf2bed/environment.yml index 9e779460b3a..ed6dca0cde9 100644 --- a/modules/nf-core/biscuit/vcf2bed/environment.yml +++ b/modules/nf-core/biscuit/vcf2bed/environment.yml @@ -1,3 +1,4 @@ +name: biscuit_vcf2bed channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/align/environment.yml b/modules/nf-core/bismark/align/environment.yml index dd3784bb76d..d7cb8a298bf 100644 --- a/modules/nf-core/bismark/align/environment.yml +++ b/modules/nf-core/bismark/align/environment.yml @@ -1,3 +1,4 @@ +name: bismark_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/coverage2cytosine/environment.yml b/modules/nf-core/bismark/coverage2cytosine/environment.yml index dd3784bb76d..abda284757e 100644 --- a/modules/nf-core/bismark/coverage2cytosine/environment.yml +++ b/modules/nf-core/bismark/coverage2cytosine/environment.yml @@ -1,3 +1,4 @@ +name: bismark_coverage2cytosine channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/deduplicate/environment.yml b/modules/nf-core/bismark/deduplicate/environment.yml index dd3784bb76d..6160c2e6d36 100644 --- a/modules/nf-core/bismark/deduplicate/environment.yml +++ b/modules/nf-core/bismark/deduplicate/environment.yml @@ -1,3 +1,4 @@ +name: bismark_deduplicate channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/genomepreparation/environment.yml b/modules/nf-core/bismark/genomepreparation/environment.yml index dd3784bb76d..e27febfcbfd 100644 --- a/modules/nf-core/bismark/genomepreparation/environment.yml +++ b/modules/nf-core/bismark/genomepreparation/environment.yml @@ -1,3 +1,4 @@ +name: bismark_genomepreparation channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/methylationextractor/environment.yml b/modules/nf-core/bismark/methylationextractor/environment.yml index dd3784bb76d..33ca119004a 100644 --- a/modules/nf-core/bismark/methylationextractor/environment.yml +++ b/modules/nf-core/bismark/methylationextractor/environment.yml @@ -1,3 +1,4 @@ +name: bismark_methylationextractor channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/report/environment.yml b/modules/nf-core/bismark/report/environment.yml index dd3784bb76d..2725a6054fe 100644 --- a/modules/nf-core/bismark/report/environment.yml +++ b/modules/nf-core/bismark/report/environment.yml @@ -1,3 +1,4 @@ +name: bismark_report channels: - conda-forge - bioconda diff --git a/modules/nf-core/bismark/summary/environment.yml b/modules/nf-core/bismark/summary/environment.yml index dd3784bb76d..8c0fe3d2c64 100644 --- a/modules/nf-core/bismark/summary/environment.yml +++ b/modules/nf-core/bismark/summary/environment.yml @@ -1,3 +1,4 @@ +name: bismark_summary channels: - conda-forge - bioconda diff --git a/modules/nf-core/blast/blastn/environment.yml b/modules/nf-core/blast/blastn/environment.yml index e2a15166f93..cb9b15dde30 100644 --- a/modules/nf-core/blast/blastn/environment.yml +++ b/modules/nf-core/blast/blastn/environment.yml @@ -1,3 +1,4 @@ +name: blast_blastn channels: - conda-forge - bioconda diff --git a/modules/nf-core/blast/blastp/environment.yml b/modules/nf-core/blast/blastp/environment.yml index e2a15166f93..b80dc2cca53 100644 --- a/modules/nf-core/blast/blastp/environment.yml +++ b/modules/nf-core/blast/blastp/environment.yml @@ -1,3 +1,4 @@ +name: blast_blastp channels: - conda-forge - bioconda diff --git a/modules/nf-core/blast/makeblastdb/environment.yml b/modules/nf-core/blast/makeblastdb/environment.yml index e2a15166f93..cf84a60e7ba 100644 --- a/modules/nf-core/blast/makeblastdb/environment.yml +++ b/modules/nf-core/blast/makeblastdb/environment.yml @@ -1,3 +1,4 @@ +name: blast_makeblastdb channels: - conda-forge - bioconda diff --git a/modules/nf-core/blast/tblastn/environment.yml b/modules/nf-core/blast/tblastn/environment.yml index e2a15166f93..2982bbe60dc 100644 --- a/modules/nf-core/blast/tblastn/environment.yml +++ b/modules/nf-core/blast/tblastn/environment.yml @@ -1,3 +1,4 @@ +name: blast_tblastn channels: - conda-forge - bioconda diff --git a/modules/nf-core/blat/environment.yml b/modules/nf-core/blat/environment.yml index 948034e6c92..ec2b1ff56dd 100644 --- a/modules/nf-core/blat/environment.yml +++ b/modules/nf-core/blat/environment.yml @@ -1,3 +1,4 @@ +name: blat channels: - conda-forge - bioconda diff --git a/modules/nf-core/bowtie/align/environment.yml b/modules/nf-core/bowtie/align/environment.yml index 8aab023fbc7..2617e6f0adc 100644 --- a/modules/nf-core/bowtie/align/environment.yml +++ b/modules/nf-core/bowtie/align/environment.yml @@ -1,3 +1,4 @@ +name: bowtie_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/bowtie/build/environment.yml b/modules/nf-core/bowtie/build/environment.yml index 8aab023fbc7..0907b0f840f 100644 --- a/modules/nf-core/bowtie/build/environment.yml +++ b/modules/nf-core/bowtie/build/environment.yml @@ -1,3 +1,4 @@ +name: bowtie_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/bowtie2/align/environment.yml b/modules/nf-core/bowtie2/align/environment.yml index 8b1e0ccee13..afc3ea871f9 100644 --- a/modules/nf-core/bowtie2/align/environment.yml +++ b/modules/nf-core/bowtie2/align/environment.yml @@ -1,3 +1,4 @@ +name: bowtie2_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/bowtie2/build/environment.yml b/modules/nf-core/bowtie2/build/environment.yml index d74ea00ebfc..17af3e50005 100644 --- a/modules/nf-core/bowtie2/build/environment.yml +++ b/modules/nf-core/bowtie2/build/environment.yml @@ -1,3 +1,4 @@ +name: bowtie2_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/bracken/bracken/environment.yml b/modules/nf-core/bracken/bracken/environment.yml index 2e55d3d8535..777f2b9c9e3 100644 --- a/modules/nf-core/bracken/bracken/environment.yml +++ b/modules/nf-core/bracken/bracken/environment.yml @@ -1,3 +1,4 @@ +name: bracken_bracken channels: - conda-forge - bioconda diff --git a/modules/nf-core/bracken/combinebrackenoutputs/environment.yml b/modules/nf-core/bracken/combinebrackenoutputs/environment.yml index 2e55d3d8535..452cd5d8f9e 100644 --- a/modules/nf-core/bracken/combinebrackenoutputs/environment.yml +++ b/modules/nf-core/bracken/combinebrackenoutputs/environment.yml @@ -1,3 +1,4 @@ +name: bracken_combinebrackenoutputs channels: - conda-forge - bioconda diff --git a/modules/nf-core/busco/environment.yml b/modules/nf-core/busco/environment.yml index 114464700cb..f872d05747e 100644 --- a/modules/nf-core/busco/environment.yml +++ b/modules/nf-core/busco/environment.yml @@ -1,3 +1,4 @@ +name: busco channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwa/aln/environment.yml b/modules/nf-core/bwa/aln/environment.yml index c5b08260088..c63d9e1f6cd 100644 --- a/modules/nf-core/bwa/aln/environment.yml +++ b/modules/nf-core/bwa/aln/environment.yml @@ -1,3 +1,4 @@ +name: bwa_aln channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwa/index/environment.yml b/modules/nf-core/bwa/index/environment.yml index c5b08260088..5d3cb3231bd 100644 --- a/modules/nf-core/bwa/index/environment.yml +++ b/modules/nf-core/bwa/index/environment.yml @@ -1,3 +1,4 @@ +name: bwa_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwa/mem/environment.yml b/modules/nf-core/bwa/mem/environment.yml index dd8ce5b89e0..401a0d06cea 100644 --- a/modules/nf-core/bwa/mem/environment.yml +++ b/modules/nf-core/bwa/mem/environment.yml @@ -1,3 +1,4 @@ +name: bwa_mem channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwa/sampe/environment.yml b/modules/nf-core/bwa/sampe/environment.yml index 34f50c48b4c..09c10c1eb95 100644 --- a/modules/nf-core/bwa/sampe/environment.yml +++ b/modules/nf-core/bwa/sampe/environment.yml @@ -1,3 +1,4 @@ +name: bwa_sampe channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwa/samse/environment.yml b/modules/nf-core/bwa/samse/environment.yml index 34f50c48b4c..ba0792bb916 100644 --- a/modules/nf-core/bwa/samse/environment.yml +++ b/modules/nf-core/bwa/samse/environment.yml @@ -1,3 +1,4 @@ +name: bwa_samse channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwamem2/index/environment.yml b/modules/nf-core/bwamem2/index/environment.yml index cef9ec4e782..26b439172ab 100644 --- a/modules/nf-core/bwamem2/index/environment.yml +++ b/modules/nf-core/bwamem2/index/environment.yml @@ -1,3 +1,4 @@ +name: bwamem2_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwamem2/mem/environment.yml b/modules/nf-core/bwamem2/mem/environment.yml index 305e152e8d1..67989071e3a 100644 --- a/modules/nf-core/bwamem2/mem/environment.yml +++ b/modules/nf-core/bwamem2/mem/environment.yml @@ -1,3 +1,4 @@ +name: bwamem2_mem channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwameth/align/environment.yml b/modules/nf-core/bwameth/align/environment.yml index 0c3048215b6..c2711df3dea 100644 --- a/modules/nf-core/bwameth/align/environment.yml +++ b/modules/nf-core/bwameth/align/environment.yml @@ -1,3 +1,4 @@ +name: bwameth_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/bwameth/index/environment.yml b/modules/nf-core/bwameth/index/environment.yml index 0c3048215b6..4fb6209260d 100644 --- a/modules/nf-core/bwameth/index/environment.yml +++ b/modules/nf-core/bwameth/index/environment.yml @@ -1,3 +1,4 @@ +name: bwameth_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/cadd/environment.yml b/modules/nf-core/cadd/environment.yml index bdd34fc6277..6a21f71ee57 100644 --- a/modules/nf-core/cadd/environment.yml +++ b/modules/nf-core/cadd/environment.yml @@ -1,3 +1,4 @@ +name: cadd channels: - conda-forge - bioconda diff --git a/modules/nf-core/calder2/environment.yml b/modules/nf-core/calder2/environment.yml index 4b93c2cebae..e694b7298e0 100644 --- a/modules/nf-core/calder2/environment.yml +++ b/modules/nf-core/calder2/environment.yml @@ -1,3 +1,4 @@ +name: calder2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/canu/environment.yml b/modules/nf-core/canu/environment.yml index 7b601cb03ff..752bbbed703 100644 --- a/modules/nf-core/canu/environment.yml +++ b/modules/nf-core/canu/environment.yml @@ -1,3 +1,4 @@ +name: canu channels: - conda-forge - bioconda diff --git a/modules/nf-core/cat/cat/environment.yml b/modules/nf-core/cat/cat/environment.yml index cdad6baafc9..17a04ef2324 100644 --- a/modules/nf-core/cat/cat/environment.yml +++ b/modules/nf-core/cat/cat/environment.yml @@ -1,3 +1,4 @@ +name: cat_cat channels: - conda-forge - bioconda diff --git a/modules/nf-core/cat/fastq/environment.yml b/modules/nf-core/cat/fastq/environment.yml index 222b301f389..bff93add01c 100644 --- a/modules/nf-core/cat/fastq/environment.yml +++ b/modules/nf-core/cat/fastq/environment.yml @@ -1,3 +1,4 @@ +name: cat_fastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/cdhit/cdhit/environment.yml b/modules/nf-core/cdhit/cdhit/environment.yml index 3db95866406..fb5b89fc862 100644 --- a/modules/nf-core/cdhit/cdhit/environment.yml +++ b/modules/nf-core/cdhit/cdhit/environment.yml @@ -1,3 +1,4 @@ +name: cdhit_cdhit channels: - conda-forge - bioconda diff --git a/modules/nf-core/cdhit/cdhitest/environment.yml b/modules/nf-core/cdhit/cdhitest/environment.yml index 3db95866406..0ddd42629a2 100644 --- a/modules/nf-core/cdhit/cdhitest/environment.yml +++ b/modules/nf-core/cdhit/cdhitest/environment.yml @@ -1,3 +1,4 @@ +name: cdhit_cdhitest channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellpose/environment.yml b/modules/nf-core/cellpose/environment.yml index bcd3a8b1c63..f8ca8bcb544 100644 --- a/modules/nf-core/cellpose/environment.yml +++ b/modules/nf-core/cellpose/environment.yml @@ -1,3 +1,4 @@ +name: cellpose channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/count/environment.yml b/modules/nf-core/cellranger/count/environment.yml index bcd3a8b1c63..662f747db46 100644 --- a/modules/nf-core/cellranger/count/environment.yml +++ b/modules/nf-core/cellranger/count/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/mkfastq/environment.yml b/modules/nf-core/cellranger/mkfastq/environment.yml index bcd3a8b1c63..2758dfd945b 100644 --- a/modules/nf-core/cellranger/mkfastq/environment.yml +++ b/modules/nf-core/cellranger/mkfastq/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_mkfastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/mkgtf/environment.yml b/modules/nf-core/cellranger/mkgtf/environment.yml index bcd3a8b1c63..c81ef3e47f3 100644 --- a/modules/nf-core/cellranger/mkgtf/environment.yml +++ b/modules/nf-core/cellranger/mkgtf/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_mkgtf channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/mkref/environment.yml b/modules/nf-core/cellranger/mkref/environment.yml index bcd3a8b1c63..9ca3e88ca6f 100644 --- a/modules/nf-core/cellranger/mkref/environment.yml +++ b/modules/nf-core/cellranger/mkref/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_mkref channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/mkvdjref/environment.yml b/modules/nf-core/cellranger/mkvdjref/environment.yml index bcd3a8b1c63..e151aeea2b9 100644 --- a/modules/nf-core/cellranger/mkvdjref/environment.yml +++ b/modules/nf-core/cellranger/mkvdjref/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_mkvdjref channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/multi/environment.yml b/modules/nf-core/cellranger/multi/environment.yml index bcd3a8b1c63..487cdad2c19 100644 --- a/modules/nf-core/cellranger/multi/environment.yml +++ b/modules/nf-core/cellranger/multi/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_multi channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellranger/vdj/environment.yml b/modules/nf-core/cellranger/vdj/environment.yml index bcd3a8b1c63..2ddcc0c6107 100644 --- a/modules/nf-core/cellranger/vdj/environment.yml +++ b/modules/nf-core/cellranger/vdj/environment.yml @@ -1,3 +1,4 @@ +name: cellranger_vdj channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellrangeratac/count/environment.yml b/modules/nf-core/cellrangeratac/count/environment.yml index bcd3a8b1c63..e8225b81a15 100644 --- a/modules/nf-core/cellrangeratac/count/environment.yml +++ b/modules/nf-core/cellrangeratac/count/environment.yml @@ -1,3 +1,4 @@ +name: cellrangeratac_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellrangeratac/mkfastq/environment.yml b/modules/nf-core/cellrangeratac/mkfastq/environment.yml index bcd3a8b1c63..50b7fc6c2b1 100644 --- a/modules/nf-core/cellrangeratac/mkfastq/environment.yml +++ b/modules/nf-core/cellrangeratac/mkfastq/environment.yml @@ -1,3 +1,4 @@ +name: cellrangeratac_mkfastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/cellrangeratac/mkref/environment.yml b/modules/nf-core/cellrangeratac/mkref/environment.yml index bcd3a8b1c63..53306bce288 100644 --- a/modules/nf-core/cellrangeratac/mkref/environment.yml +++ b/modules/nf-core/cellrangeratac/mkref/environment.yml @@ -1,3 +1,4 @@ +name: cellrangeratac_mkref channels: - conda-forge - bioconda diff --git a/modules/nf-core/centrifuge/centrifuge/environment.yml b/modules/nf-core/centrifuge/centrifuge/environment.yml index 119545592de..c843118b8d8 100644 --- a/modules/nf-core/centrifuge/centrifuge/environment.yml +++ b/modules/nf-core/centrifuge/centrifuge/environment.yml @@ -1,3 +1,4 @@ +name: centrifuge_centrifuge channels: - conda-forge - bioconda diff --git a/modules/nf-core/centrifuge/kreport/environment.yml b/modules/nf-core/centrifuge/kreport/environment.yml index 119545592de..70e07bbf5e2 100644 --- a/modules/nf-core/centrifuge/kreport/environment.yml +++ b/modules/nf-core/centrifuge/kreport/environment.yml @@ -1,3 +1,4 @@ +name: centrifuge_kreport channels: - conda-forge - bioconda diff --git a/modules/nf-core/checkm/lineagewf/environment.yml b/modules/nf-core/checkm/lineagewf/environment.yml index 425f90a3b69..004267fae98 100644 --- a/modules/nf-core/checkm/lineagewf/environment.yml +++ b/modules/nf-core/checkm/lineagewf/environment.yml @@ -1,3 +1,4 @@ +name: checkm_lineagewf channels: - conda-forge - bioconda diff --git a/modules/nf-core/checkm/qa/environment.yml b/modules/nf-core/checkm/qa/environment.yml index 425f90a3b69..3937f98bfe4 100644 --- a/modules/nf-core/checkm/qa/environment.yml +++ b/modules/nf-core/checkm/qa/environment.yml @@ -1,3 +1,4 @@ +name: checkm_qa channels: - conda-forge - bioconda diff --git a/modules/nf-core/checkv/downloaddatabase/environment.yml b/modules/nf-core/checkv/downloaddatabase/environment.yml index d854931f23c..9dfdcd12c66 100644 --- a/modules/nf-core/checkv/downloaddatabase/environment.yml +++ b/modules/nf-core/checkv/downloaddatabase/environment.yml @@ -1,3 +1,4 @@ +name: checkv_downloaddatabase channels: - conda-forge - bioconda diff --git a/modules/nf-core/checkv/endtoend/environment.yml b/modules/nf-core/checkv/endtoend/environment.yml index d854931f23c..2acd3851769 100644 --- a/modules/nf-core/checkv/endtoend/environment.yml +++ b/modules/nf-core/checkv/endtoend/environment.yml @@ -1,3 +1,4 @@ +name: checkv_endtoend channels: - conda-forge - bioconda diff --git a/modules/nf-core/checkv/updatedatabase/environment.yml b/modules/nf-core/checkv/updatedatabase/environment.yml index d854931f23c..8b1eeaad0b0 100644 --- a/modules/nf-core/checkv/updatedatabase/environment.yml +++ b/modules/nf-core/checkv/updatedatabase/environment.yml @@ -1,3 +1,4 @@ +name: checkv_updatedatabase channels: - conda-forge - bioconda diff --git a/modules/nf-core/chopper/environment.yml b/modules/nf-core/chopper/environment.yml index ec18cf6bd38..ef9aaa425a2 100644 --- a/modules/nf-core/chopper/environment.yml +++ b/modules/nf-core/chopper/environment.yml @@ -1,3 +1,4 @@ +name: chopper channels: - conda-forge - bioconda diff --git a/modules/nf-core/chromap/chromap/environment.yml b/modules/nf-core/chromap/chromap/environment.yml index 9ea8586b41d..a630f9c5b61 100644 --- a/modules/nf-core/chromap/chromap/environment.yml +++ b/modules/nf-core/chromap/chromap/environment.yml @@ -1,3 +1,4 @@ +name: chromap_chromap channels: - conda-forge - bioconda diff --git a/modules/nf-core/chromap/index/environment.yml b/modules/nf-core/chromap/index/environment.yml index e9e2388917c..4581d1f385d 100644 --- a/modules/nf-core/chromap/index/environment.yml +++ b/modules/nf-core/chromap/index/environment.yml @@ -1,3 +1,4 @@ +name: chromap_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/chromograph/environment.yml b/modules/nf-core/chromograph/environment.yml index 7772a763cd4..4fe69462af4 100644 --- a/modules/nf-core/chromograph/environment.yml +++ b/modules/nf-core/chromograph/environment.yml @@ -1,3 +1,4 @@ +name: chromograph channels: - conda-forge - bioconda diff --git a/modules/nf-core/circexplorer2/annotate/environment.yml b/modules/nf-core/circexplorer2/annotate/environment.yml index d633bd36e69..def886e9359 100644 --- a/modules/nf-core/circexplorer2/annotate/environment.yml +++ b/modules/nf-core/circexplorer2/annotate/environment.yml @@ -1,3 +1,4 @@ +name: circexplorer2_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/circexplorer2/parse/environment.yml b/modules/nf-core/circexplorer2/parse/environment.yml index d633bd36e69..52e172e7edd 100644 --- a/modules/nf-core/circexplorer2/parse/environment.yml +++ b/modules/nf-core/circexplorer2/parse/environment.yml @@ -1,3 +1,4 @@ +name: circexplorer2_parse channels: - conda-forge - bioconda diff --git a/modules/nf-core/clippy/environment.yml b/modules/nf-core/clippy/environment.yml index f3d2f625201..31f239754b5 100644 --- a/modules/nf-core/clippy/environment.yml +++ b/modules/nf-core/clippy/environment.yml @@ -1,3 +1,4 @@ +name: clippy channels: - conda-forge - bioconda diff --git a/modules/nf-core/clonalframeml/environment.yml b/modules/nf-core/clonalframeml/environment.yml index d927b211324..97b5467cd6e 100644 --- a/modules/nf-core/clonalframeml/environment.yml +++ b/modules/nf-core/clonalframeml/environment.yml @@ -1,3 +1,4 @@ +name: clonalframeml channels: - conda-forge - bioconda diff --git a/modules/nf-core/clustalo/align/environment.yml b/modules/nf-core/clustalo/align/environment.yml index 701e7290de8..1e08e574e37 100644 --- a/modules/nf-core/clustalo/align/environment.yml +++ b/modules/nf-core/clustalo/align/environment.yml @@ -1,3 +1,4 @@ +name: clustalo_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/clustalo/guidetree/environment.yml b/modules/nf-core/clustalo/guidetree/environment.yml index 701e7290de8..38b2f5b92fc 100644 --- a/modules/nf-core/clustalo/guidetree/environment.yml +++ b/modules/nf-core/clustalo/guidetree/environment.yml @@ -1,3 +1,4 @@ +name: clustalo_guidetree channels: - conda-forge - bioconda diff --git a/modules/nf-core/cmseq/polymut/environment.yml b/modules/nf-core/cmseq/polymut/environment.yml index 278c5d2e24b..01309aa4ca9 100644 --- a/modules/nf-core/cmseq/polymut/environment.yml +++ b/modules/nf-core/cmseq/polymut/environment.yml @@ -1,3 +1,4 @@ +name: cmseq_polymut channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/access/environment.yml b/modules/nf-core/cnvkit/access/environment.yml index ef6bec487e9..1430593af68 100644 --- a/modules/nf-core/cnvkit/access/environment.yml +++ b/modules/nf-core/cnvkit/access/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_access channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/antitarget/environment.yml b/modules/nf-core/cnvkit/antitarget/environment.yml index ef6bec487e9..08a0b27cea3 100644 --- a/modules/nf-core/cnvkit/antitarget/environment.yml +++ b/modules/nf-core/cnvkit/antitarget/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_antitarget channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/batch/environment.yml b/modules/nf-core/cnvkit/batch/environment.yml index ef6bec487e9..eb9ed375b77 100644 --- a/modules/nf-core/cnvkit/batch/environment.yml +++ b/modules/nf-core/cnvkit/batch/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_batch channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/call/environment.yml b/modules/nf-core/cnvkit/call/environment.yml index ef6bec487e9..587f06fb376 100644 --- a/modules/nf-core/cnvkit/call/environment.yml +++ b/modules/nf-core/cnvkit/call/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/export/environment.yml b/modules/nf-core/cnvkit/export/environment.yml index ef6bec487e9..bc523c80275 100644 --- a/modules/nf-core/cnvkit/export/environment.yml +++ b/modules/nf-core/cnvkit/export/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_export channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/genemetrics/environment.yml b/modules/nf-core/cnvkit/genemetrics/environment.yml index ef6bec487e9..2d00f762e2e 100644 --- a/modules/nf-core/cnvkit/genemetrics/environment.yml +++ b/modules/nf-core/cnvkit/genemetrics/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_genemetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/reference/environment.yml b/modules/nf-core/cnvkit/reference/environment.yml index ef6bec487e9..6bb62f90540 100644 --- a/modules/nf-core/cnvkit/reference/environment.yml +++ b/modules/nf-core/cnvkit/reference/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_reference channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvkit/target/environment.yml b/modules/nf-core/cnvkit/target/environment.yml index ef6bec487e9..a69b91eaf66 100644 --- a/modules/nf-core/cnvkit/target/environment.yml +++ b/modules/nf-core/cnvkit/target/environment.yml @@ -1,3 +1,4 @@ +name: cnvkit_target channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvnator/cnvnator/environment.yml b/modules/nf-core/cnvnator/cnvnator/environment.yml index 6656e3ff556..8b7ecaef9c3 100644 --- a/modules/nf-core/cnvnator/cnvnator/environment.yml +++ b/modules/nf-core/cnvnator/cnvnator/environment.yml @@ -1,3 +1,4 @@ +name: cnvnator_cnvnator channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvnator/convert2vcf/environment.yml b/modules/nf-core/cnvnator/convert2vcf/environment.yml index 6656e3ff556..d324fb04541 100644 --- a/modules/nf-core/cnvnator/convert2vcf/environment.yml +++ b/modules/nf-core/cnvnator/convert2vcf/environment.yml @@ -1,3 +1,4 @@ +name: cnvnator_convert2vcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvpytor/callcnvs/environment.yml b/modules/nf-core/cnvpytor/callcnvs/environment.yml index d22c5922ad3..24a5455cc55 100644 --- a/modules/nf-core/cnvpytor/callcnvs/environment.yml +++ b/modules/nf-core/cnvpytor/callcnvs/environment.yml @@ -1,3 +1,4 @@ +name: cnvpytor_callcnvs channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvpytor/histogram/environment.yml b/modules/nf-core/cnvpytor/histogram/environment.yml index d22c5922ad3..21032cdfcf9 100644 --- a/modules/nf-core/cnvpytor/histogram/environment.yml +++ b/modules/nf-core/cnvpytor/histogram/environment.yml @@ -1,3 +1,4 @@ +name: cnvpytor_histogram channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvpytor/importreaddepth/environment.yml b/modules/nf-core/cnvpytor/importreaddepth/environment.yml index d22c5922ad3..e42dfdef33d 100644 --- a/modules/nf-core/cnvpytor/importreaddepth/environment.yml +++ b/modules/nf-core/cnvpytor/importreaddepth/environment.yml @@ -1,3 +1,4 @@ +name: cnvpytor_importreaddepth channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvpytor/partition/environment.yml b/modules/nf-core/cnvpytor/partition/environment.yml index d22c5922ad3..b4349622929 100644 --- a/modules/nf-core/cnvpytor/partition/environment.yml +++ b/modules/nf-core/cnvpytor/partition/environment.yml @@ -1,3 +1,4 @@ +name: cnvpytor_partition channels: - conda-forge - bioconda diff --git a/modules/nf-core/cnvpytor/view/environment.yml b/modules/nf-core/cnvpytor/view/environment.yml index d22c5922ad3..4190901fa86 100644 --- a/modules/nf-core/cnvpytor/view/environment.yml +++ b/modules/nf-core/cnvpytor/view/environment.yml @@ -1,3 +1,4 @@ +name: cnvpytor_view channels: - conda-forge - bioconda diff --git a/modules/nf-core/concoct/concoct/environment.yml b/modules/nf-core/concoct/concoct/environment.yml index fe695c959c9..af1c59f06f9 100644 --- a/modules/nf-core/concoct/concoct/environment.yml +++ b/modules/nf-core/concoct/concoct/environment.yml @@ -1,3 +1,4 @@ +name: concoct_concoct channels: - conda-forge - bioconda diff --git a/modules/nf-core/concoct/concoctcoveragetable/environment.yml b/modules/nf-core/concoct/concoctcoveragetable/environment.yml index fe695c959c9..4152605fdd4 100644 --- a/modules/nf-core/concoct/concoctcoveragetable/environment.yml +++ b/modules/nf-core/concoct/concoctcoveragetable/environment.yml @@ -1,3 +1,4 @@ +name: concoct_concoctcoveragetable channels: - conda-forge - bioconda diff --git a/modules/nf-core/concoct/cutupfasta/environment.yml b/modules/nf-core/concoct/cutupfasta/environment.yml index fe695c959c9..c69271975cf 100644 --- a/modules/nf-core/concoct/cutupfasta/environment.yml +++ b/modules/nf-core/concoct/cutupfasta/environment.yml @@ -1,3 +1,4 @@ +name: concoct_cutupfasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/concoct/extractfastabins/environment.yml b/modules/nf-core/concoct/extractfastabins/environment.yml index fe695c959c9..e31d2e86039 100644 --- a/modules/nf-core/concoct/extractfastabins/environment.yml +++ b/modules/nf-core/concoct/extractfastabins/environment.yml @@ -1,3 +1,4 @@ +name: concoct_extractfastabins channels: - conda-forge - bioconda diff --git a/modules/nf-core/concoct/mergecutupclustering/environment.yml b/modules/nf-core/concoct/mergecutupclustering/environment.yml index fe695c959c9..459d65c740b 100644 --- a/modules/nf-core/concoct/mergecutupclustering/environment.yml +++ b/modules/nf-core/concoct/mergecutupclustering/environment.yml @@ -1,3 +1,4 @@ +name: concoct_mergecutupclustering channels: - conda-forge - bioconda diff --git a/modules/nf-core/conifer/environment.yml b/modules/nf-core/conifer/environment.yml index 487c41e249c..ab1703d4ab0 100644 --- a/modules/nf-core/conifer/environment.yml +++ b/modules/nf-core/conifer/environment.yml @@ -1,3 +1,4 @@ +name: conifer channels: - conda-forge - bioconda diff --git a/modules/nf-core/controlfreec/assesssignificance/environment.yml b/modules/nf-core/controlfreec/assesssignificance/environment.yml index 83094f46cad..94d4d2275a0 100644 --- a/modules/nf-core/controlfreec/assesssignificance/environment.yml +++ b/modules/nf-core/controlfreec/assesssignificance/environment.yml @@ -1,3 +1,4 @@ +name: controlfreec_assesssignificance channels: - conda-forge - bioconda diff --git a/modules/nf-core/controlfreec/freec/environment.yml b/modules/nf-core/controlfreec/freec/environment.yml index 83094f46cad..cb76c6ba933 100644 --- a/modules/nf-core/controlfreec/freec/environment.yml +++ b/modules/nf-core/controlfreec/freec/environment.yml @@ -1,3 +1,4 @@ +name: controlfreec_freec channels: - conda-forge - bioconda diff --git a/modules/nf-core/controlfreec/freec2bed/environment.yml b/modules/nf-core/controlfreec/freec2bed/environment.yml index 83094f46cad..12601ffa556 100644 --- a/modules/nf-core/controlfreec/freec2bed/environment.yml +++ b/modules/nf-core/controlfreec/freec2bed/environment.yml @@ -1,3 +1,4 @@ +name: controlfreec_freec2bed channels: - conda-forge - bioconda diff --git a/modules/nf-core/controlfreec/freec2circos/environment.yml b/modules/nf-core/controlfreec/freec2circos/environment.yml index 83094f46cad..1915abfd7f4 100644 --- a/modules/nf-core/controlfreec/freec2circos/environment.yml +++ b/modules/nf-core/controlfreec/freec2circos/environment.yml @@ -1,3 +1,4 @@ +name: controlfreec_freec2circos channels: - conda-forge - bioconda diff --git a/modules/nf-core/controlfreec/makegraph/environment.yml b/modules/nf-core/controlfreec/makegraph/environment.yml index 83094f46cad..897eadf3bd4 100644 --- a/modules/nf-core/controlfreec/makegraph/environment.yml +++ b/modules/nf-core/controlfreec/makegraph/environment.yml @@ -1,3 +1,4 @@ +name: controlfreec_makegraph channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/balance/environment.yml b/modules/nf-core/cooler/balance/environment.yml index a62fa2af6a4..b39304dee23 100644 --- a/modules/nf-core/cooler/balance/environment.yml +++ b/modules/nf-core/cooler/balance/environment.yml @@ -1,3 +1,4 @@ +name: cooler_balance channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/cload/environment.yml b/modules/nf-core/cooler/cload/environment.yml index a62fa2af6a4..03abee73254 100644 --- a/modules/nf-core/cooler/cload/environment.yml +++ b/modules/nf-core/cooler/cload/environment.yml @@ -1,3 +1,4 @@ +name: cooler_cload channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/digest/environment.yml b/modules/nf-core/cooler/digest/environment.yml index a62fa2af6a4..2b374d5ee55 100644 --- a/modules/nf-core/cooler/digest/environment.yml +++ b/modules/nf-core/cooler/digest/environment.yml @@ -1,3 +1,4 @@ +name: cooler_digest channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/dump/environment.yml b/modules/nf-core/cooler/dump/environment.yml index a62fa2af6a4..b4d88e92cb7 100644 --- a/modules/nf-core/cooler/dump/environment.yml +++ b/modules/nf-core/cooler/dump/environment.yml @@ -1,3 +1,4 @@ +name: cooler_dump channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/makebins/environment.yml b/modules/nf-core/cooler/makebins/environment.yml index a62fa2af6a4..e48b3a17519 100644 --- a/modules/nf-core/cooler/makebins/environment.yml +++ b/modules/nf-core/cooler/makebins/environment.yml @@ -1,3 +1,4 @@ +name: cooler_makebins channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/merge/environment.yml b/modules/nf-core/cooler/merge/environment.yml index a62fa2af6a4..1b3ea8da82a 100644 --- a/modules/nf-core/cooler/merge/environment.yml +++ b/modules/nf-core/cooler/merge/environment.yml @@ -1,3 +1,4 @@ +name: cooler_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/cooler/zoomify/environment.yml b/modules/nf-core/cooler/zoomify/environment.yml index a62fa2af6a4..2288f376262 100644 --- a/modules/nf-core/cooler/zoomify/environment.yml +++ b/modules/nf-core/cooler/zoomify/environment.yml @@ -1,3 +1,4 @@ +name: cooler_zoomify channels: - conda-forge - bioconda diff --git a/modules/nf-core/coreograph/environment.yml b/modules/nf-core/coreograph/environment.yml index bcd3a8b1c63..0ee4a964b04 100644 --- a/modules/nf-core/coreograph/environment.yml +++ b/modules/nf-core/coreograph/environment.yml @@ -1,3 +1,4 @@ +name: coreograph channels: - conda-forge - bioconda diff --git a/modules/nf-core/crisprcleanr/normalize/environment.yml b/modules/nf-core/crisprcleanr/normalize/environment.yml index 6e5118b8ba7..b183c62dcae 100644 --- a/modules/nf-core/crisprcleanr/normalize/environment.yml +++ b/modules/nf-core/crisprcleanr/normalize/environment.yml @@ -1,3 +1,4 @@ +name: crisprcleanr_normalize channels: - conda-forge - bioconda diff --git a/modules/nf-core/crumble/environment.yml b/modules/nf-core/crumble/environment.yml index 0ae1135194f..de739022aec 100644 --- a/modules/nf-core/crumble/environment.yml +++ b/modules/nf-core/crumble/environment.yml @@ -1,3 +1,4 @@ +name: crumble channels: - conda-forge - bioconda diff --git a/modules/nf-core/csvtk/concat/environment.yml b/modules/nf-core/csvtk/concat/environment.yml index 146d94dbaa1..ed1ba26bd33 100644 --- a/modules/nf-core/csvtk/concat/environment.yml +++ b/modules/nf-core/csvtk/concat/environment.yml @@ -1,3 +1,4 @@ +name: csvtk_concat channels: - conda-forge - bioconda diff --git a/modules/nf-core/csvtk/join/environment.yml b/modules/nf-core/csvtk/join/environment.yml index 5a7dafa8bcc..b488c8614c6 100644 --- a/modules/nf-core/csvtk/join/environment.yml +++ b/modules/nf-core/csvtk/join/environment.yml @@ -1,3 +1,4 @@ +name: csvtk_join channels: - conda-forge - bioconda diff --git a/modules/nf-core/csvtk/split/environment.yml b/modules/nf-core/csvtk/split/environment.yml index 146d94dbaa1..58d04d95c65 100644 --- a/modules/nf-core/csvtk/split/environment.yml +++ b/modules/nf-core/csvtk/split/environment.yml @@ -1,3 +1,4 @@ +name: csvtk_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml index 9d0e6b2090c..f0c63f69842 100644 --- a/modules/nf-core/custom/dumpsoftwareversions/environment.yml +++ b/modules/nf-core/custom/dumpsoftwareversions/environment.yml @@ -1,3 +1,4 @@ +name: custom_dumpsoftwareversions channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/getchromsizes/environment.yml b/modules/nf-core/custom/getchromsizes/environment.yml index fdb4bcca548..2a01695f120 100644 --- a/modules/nf-core/custom/getchromsizes/environment.yml +++ b/modules/nf-core/custom/getchromsizes/environment.yml @@ -1,3 +1,4 @@ +name: custom_getchromsizes channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/matrixfilter/environment.yml b/modules/nf-core/custom/matrixfilter/environment.yml index 383c136b482..322c673ea2a 100644 --- a/modules/nf-core/custom/matrixfilter/environment.yml +++ b/modules/nf-core/custom/matrixfilter/environment.yml @@ -1,3 +1,4 @@ +name: custom_matrixfilter channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/sratoolsncbisettings/environment.yml b/modules/nf-core/custom/sratoolsncbisettings/environment.yml index 9a76162ed24..5ea32741f8c 100644 --- a/modules/nf-core/custom/sratoolsncbisettings/environment.yml +++ b/modules/nf-core/custom/sratoolsncbisettings/environment.yml @@ -1,3 +1,4 @@ +name: sratoolsncbisettings channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/tabulartogseacls/environment.yml b/modules/nf-core/custom/tabulartogseacls/environment.yml index d9675fcebb4..96c3276dfb6 100644 --- a/modules/nf-core/custom/tabulartogseacls/environment.yml +++ b/modules/nf-core/custom/tabulartogseacls/environment.yml @@ -1,3 +1,4 @@ +name: custom_tabulartogseacls channels: - conda-forge - bioconda diff --git a/modules/nf-core/custom/tabulartogseagct/environment.yml b/modules/nf-core/custom/tabulartogseagct/environment.yml index d9675fcebb4..73cd511d2c6 100644 --- a/modules/nf-core/custom/tabulartogseagct/environment.yml +++ b/modules/nf-core/custom/tabulartogseagct/environment.yml @@ -1,3 +1,4 @@ +name: custom_tabulartogseagct channels: - conda-forge - bioconda diff --git a/modules/nf-core/cutadapt/environment.yml b/modules/nf-core/cutadapt/environment.yml index 87f03205b6b..d32a8f97b9e 100644 --- a/modules/nf-core/cutadapt/environment.yml +++ b/modules/nf-core/cutadapt/environment.yml @@ -1,3 +1,4 @@ +name: cutadapt channels: - conda-forge - bioconda diff --git a/modules/nf-core/cutesv/environment.yml b/modules/nf-core/cutesv/environment.yml index 5a8b99baaeb..e757dfc275f 100644 --- a/modules/nf-core/cutesv/environment.yml +++ b/modules/nf-core/cutesv/environment.yml @@ -1,3 +1,4 @@ +name: cutesv channels: - conda-forge - bioconda diff --git a/modules/nf-core/damageprofiler/environment.yml b/modules/nf-core/damageprofiler/environment.yml index 28c0b37857b..e91d4077c29 100644 --- a/modules/nf-core/damageprofiler/environment.yml +++ b/modules/nf-core/damageprofiler/environment.yml @@ -1,3 +1,4 @@ +name: damageprofiler channels: - conda-forge - bioconda diff --git a/modules/nf-core/dastool/dastool/environment.yml b/modules/nf-core/dastool/dastool/environment.yml index f35122e2800..8c40a88b6f9 100644 --- a/modules/nf-core/dastool/dastool/environment.yml +++ b/modules/nf-core/dastool/dastool/environment.yml @@ -1,3 +1,4 @@ +name: dastool_dastool channels: - conda-forge - bioconda diff --git a/modules/nf-core/dastool/fastatocontig2bin/environment.yml b/modules/nf-core/dastool/fastatocontig2bin/environment.yml index f35122e2800..1085cd27cff 100644 --- a/modules/nf-core/dastool/fastatocontig2bin/environment.yml +++ b/modules/nf-core/dastool/fastatocontig2bin/environment.yml @@ -1,3 +1,4 @@ +name: dastool_fastatocontig2bin channels: - conda-forge - bioconda diff --git a/modules/nf-core/dastool/scaffolds2bin/environment.yml b/modules/nf-core/dastool/scaffolds2bin/environment.yml index c4afe734fa2..27ca5da19fb 100644 --- a/modules/nf-core/dastool/scaffolds2bin/environment.yml +++ b/modules/nf-core/dastool/scaffolds2bin/environment.yml @@ -1,3 +1,4 @@ +name: dastool_scaffolds2bin channels: - conda-forge - bioconda diff --git a/modules/nf-core/dedup/environment.yml b/modules/nf-core/dedup/environment.yml index 415ce69e3c0..e3e3866143d 100644 --- a/modules/nf-core/dedup/environment.yml +++ b/modules/nf-core/dedup/environment.yml @@ -1,3 +1,4 @@ +name: dedup channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeparg/downloaddata/environment.yml b/modules/nf-core/deeparg/downloaddata/environment.yml index 5df51cdb231..7cd81eb269a 100644 --- a/modules/nf-core/deeparg/downloaddata/environment.yml +++ b/modules/nf-core/deeparg/downloaddata/environment.yml @@ -1,3 +1,4 @@ +name: deeparg_downloaddata channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeparg/predict/environment.yml b/modules/nf-core/deeparg/predict/environment.yml index 5df51cdb231..b727f4f785b 100644 --- a/modules/nf-core/deeparg/predict/environment.yml +++ b/modules/nf-core/deeparg/predict/environment.yml @@ -1,3 +1,4 @@ +name: deeparg_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/deepbgc/download/environment.yml b/modules/nf-core/deepbgc/download/environment.yml index 8cf40456745..cefec30ec0d 100644 --- a/modules/nf-core/deepbgc/download/environment.yml +++ b/modules/nf-core/deepbgc/download/environment.yml @@ -1,3 +1,4 @@ +name: deepbgc_download channels: - conda-forge - bioconda diff --git a/modules/nf-core/deepbgc/pipeline/environment.yml b/modules/nf-core/deepbgc/pipeline/environment.yml index 8cf40456745..8d18e55e024 100644 --- a/modules/nf-core/deepbgc/pipeline/environment.yml +++ b/modules/nf-core/deepbgc/pipeline/environment.yml @@ -1,3 +1,4 @@ +name: deepbgc_pipeline channels: - conda-forge - bioconda diff --git a/modules/nf-core/deepcell/mesmer/environment.yml b/modules/nf-core/deepcell/mesmer/environment.yml index bcd3a8b1c63..950b58c89de 100644 --- a/modules/nf-core/deepcell/mesmer/environment.yml +++ b/modules/nf-core/deepcell/mesmer/environment.yml @@ -1,3 +1,4 @@ +name: deepcell_mesmer channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptmhmm/environment.yml b/modules/nf-core/deeptmhmm/environment.yml index 025e9fc1ede..84311c8e281 100644 --- a/modules/nf-core/deeptmhmm/environment.yml +++ b/modules/nf-core/deeptmhmm/environment.yml @@ -1,3 +1,4 @@ +name: deeptmhmm channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/bamcoverage/environment.yml b/modules/nf-core/deeptools/bamcoverage/environment.yml index 762dd210e6a..345ac703a7d 100644 --- a/modules/nf-core/deeptools/bamcoverage/environment.yml +++ b/modules/nf-core/deeptools/bamcoverage/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_bamcoverage channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/computematrix/environment.yml b/modules/nf-core/deeptools/computematrix/environment.yml index c9519d82e70..b1b0866ddbb 100644 --- a/modules/nf-core/deeptools/computematrix/environment.yml +++ b/modules/nf-core/deeptools/computematrix/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_computematrix channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/multibamsummary/environment.yml b/modules/nf-core/deeptools/multibamsummary/environment.yml index c9519d82e70..724eb87412d 100644 --- a/modules/nf-core/deeptools/multibamsummary/environment.yml +++ b/modules/nf-core/deeptools/multibamsummary/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_multibamsummary channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/plotcorrelation/environment.yml b/modules/nf-core/deeptools/plotcorrelation/environment.yml index c9519d82e70..be1bc78ae73 100644 --- a/modules/nf-core/deeptools/plotcorrelation/environment.yml +++ b/modules/nf-core/deeptools/plotcorrelation/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_plotcorrelation channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/plotfingerprint/environment.yml b/modules/nf-core/deeptools/plotfingerprint/environment.yml index c9519d82e70..14654fbb4ec 100644 --- a/modules/nf-core/deeptools/plotfingerprint/environment.yml +++ b/modules/nf-core/deeptools/plotfingerprint/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_plotfingerprint channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/plotheatmap/environment.yml b/modules/nf-core/deeptools/plotheatmap/environment.yml index c9519d82e70..05f2b3ca78f 100644 --- a/modules/nf-core/deeptools/plotheatmap/environment.yml +++ b/modules/nf-core/deeptools/plotheatmap/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_plotheatmap channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/plotpca/environment.yml b/modules/nf-core/deeptools/plotpca/environment.yml index c9519d82e70..20e4a2f2efb 100644 --- a/modules/nf-core/deeptools/plotpca/environment.yml +++ b/modules/nf-core/deeptools/plotpca/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_plotpca channels: - conda-forge - bioconda diff --git a/modules/nf-core/deeptools/plotprofile/environment.yml b/modules/nf-core/deeptools/plotprofile/environment.yml index c9519d82e70..7ee9c7dae34 100644 --- a/modules/nf-core/deeptools/plotprofile/environment.yml +++ b/modules/nf-core/deeptools/plotprofile/environment.yml @@ -1,3 +1,4 @@ +name: deeptools_plotprofile channels: - conda-forge - bioconda diff --git a/modules/nf-core/deepvariant/environment.yml b/modules/nf-core/deepvariant/environment.yml index bcd3a8b1c63..648a76dea69 100644 --- a/modules/nf-core/deepvariant/environment.yml +++ b/modules/nf-core/deepvariant/environment.yml @@ -1,3 +1,4 @@ +name: deepvariant channels: - conda-forge - bioconda diff --git a/modules/nf-core/delly/call/environment.yml b/modules/nf-core/delly/call/environment.yml index cc680f4de75..0460979c21e 100644 --- a/modules/nf-core/delly/call/environment.yml +++ b/modules/nf-core/delly/call/environment.yml @@ -1,3 +1,4 @@ +name: delly_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/deseq2/differential/environment.yml b/modules/nf-core/deseq2/differential/environment.yml index 36e665e680c..0ab1d0b6d95 100644 --- a/modules/nf-core/deseq2/differential/environment.yml +++ b/modules/nf-core/deseq2/differential/environment.yml @@ -1,3 +1,4 @@ +name: deseq2_differential channels: - conda-forge - bioconda diff --git a/modules/nf-core/diamond/blastp/environment.yml b/modules/nf-core/diamond/blastp/environment.yml index 3098b9bfe70..922ea7ed178 100644 --- a/modules/nf-core/diamond/blastp/environment.yml +++ b/modules/nf-core/diamond/blastp/environment.yml @@ -1,3 +1,4 @@ +name: diamond_blastp channels: - conda-forge - bioconda diff --git a/modules/nf-core/diamond/blastx/environment.yml b/modules/nf-core/diamond/blastx/environment.yml index 3098b9bfe70..70d6857d1dd 100644 --- a/modules/nf-core/diamond/blastx/environment.yml +++ b/modules/nf-core/diamond/blastx/environment.yml @@ -1,3 +1,4 @@ +name: diamond_blastx channels: - conda-forge - bioconda diff --git a/modules/nf-core/diamond/makedb/environment.yml b/modules/nf-core/diamond/makedb/environment.yml index 3098b9bfe70..0196bd65bce 100644 --- a/modules/nf-core/diamond/makedb/environment.yml +++ b/modules/nf-core/diamond/makedb/environment.yml @@ -1,3 +1,4 @@ +name: diamond_makedb channels: - conda-forge - bioconda diff --git a/modules/nf-core/dragmap/align/environment.yml b/modules/nf-core/dragmap/align/environment.yml index d14cb276d96..b00e62f4353 100644 --- a/modules/nf-core/dragmap/align/environment.yml +++ b/modules/nf-core/dragmap/align/environment.yml @@ -1,3 +1,4 @@ +name: dragmap_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/dragmap/hashtable/environment.yml b/modules/nf-core/dragmap/hashtable/environment.yml index 5f6c5f1bdbe..254a7426073 100644 --- a/modules/nf-core/dragmap/hashtable/environment.yml +++ b/modules/nf-core/dragmap/hashtable/environment.yml @@ -1,3 +1,4 @@ +name: dragmap_hashtable channels: - conda-forge - bioconda diff --git a/modules/nf-core/dragonflye/environment.yml b/modules/nf-core/dragonflye/environment.yml index 8a7ad456045..588b14ab585 100644 --- a/modules/nf-core/dragonflye/environment.yml +++ b/modules/nf-core/dragonflye/environment.yml @@ -1,3 +1,4 @@ +name: dragonflye channels: - conda-forge - bioconda diff --git a/modules/nf-core/dshbio/exportsegments/environment.yml b/modules/nf-core/dshbio/exportsegments/environment.yml index 3df8f1381fa..0d5c2d235b5 100644 --- a/modules/nf-core/dshbio/exportsegments/environment.yml +++ b/modules/nf-core/dshbio/exportsegments/environment.yml @@ -1,3 +1,4 @@ +name: dshbio_exportsegments channels: - conda-forge - bioconda diff --git a/modules/nf-core/dshbio/filterbed/environment.yml b/modules/nf-core/dshbio/filterbed/environment.yml index 3df8f1381fa..dc3171fa468 100644 --- a/modules/nf-core/dshbio/filterbed/environment.yml +++ b/modules/nf-core/dshbio/filterbed/environment.yml @@ -1,3 +1,4 @@ +name: dshbio_filterbed channels: - conda-forge - bioconda diff --git a/modules/nf-core/dshbio/filtergff3/environment.yml b/modules/nf-core/dshbio/filtergff3/environment.yml index 3df8f1381fa..758e1362b5c 100644 --- a/modules/nf-core/dshbio/filtergff3/environment.yml +++ b/modules/nf-core/dshbio/filtergff3/environment.yml @@ -1,3 +1,4 @@ +name: dshbio_filtergff3 channels: - conda-forge - bioconda diff --git a/modules/nf-core/dshbio/splitbed/environment.yml b/modules/nf-core/dshbio/splitbed/environment.yml index 3df8f1381fa..d00d7d17873 100644 --- a/modules/nf-core/dshbio/splitbed/environment.yml +++ b/modules/nf-core/dshbio/splitbed/environment.yml @@ -1,3 +1,4 @@ +name: dshbio_splitbed channels: - conda-forge - bioconda diff --git a/modules/nf-core/dshbio/splitgff3/environment.yml b/modules/nf-core/dshbio/splitgff3/environment.yml index 3df8f1381fa..7b25d1136ea 100644 --- a/modules/nf-core/dshbio/splitgff3/environment.yml +++ b/modules/nf-core/dshbio/splitgff3/environment.yml @@ -1,3 +1,4 @@ +name: dshbio_splitgff3 channels: - conda-forge - bioconda diff --git a/modules/nf-core/duphold/environment.yml b/modules/nf-core/duphold/environment.yml index af76e0cc52e..cf3fe32ba5f 100644 --- a/modules/nf-core/duphold/environment.yml +++ b/modules/nf-core/duphold/environment.yml @@ -1,3 +1,4 @@ +name: duphold channels: - conda-forge - bioconda diff --git a/modules/nf-core/ectyper/environment.yml b/modules/nf-core/ectyper/environment.yml index 600f8564268..1fb6b720756 100644 --- a/modules/nf-core/ectyper/environment.yml +++ b/modules/nf-core/ectyper/environment.yml @@ -1,3 +1,4 @@ +name: ectyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/eido/convert/environment.yml b/modules/nf-core/eido/convert/environment.yml index 67c5a563cd6..e41751abc07 100644 --- a/modules/nf-core/eido/convert/environment.yml +++ b/modules/nf-core/eido/convert/environment.yml @@ -1,3 +1,4 @@ +name: eido_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/eido/validate/environment.yml b/modules/nf-core/eido/validate/environment.yml index 67c5a563cd6..b529a66f4cb 100644 --- a/modules/nf-core/eido/validate/environment.yml +++ b/modules/nf-core/eido/validate/environment.yml @@ -1,3 +1,4 @@ +name: eido_validate channels: - conda-forge - bioconda diff --git a/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/environment.yml b/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/environment.yml index 71896c0bef8..9ac9ee9fe55 100644 --- a/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/environment.yml +++ b/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/environment.yml @@ -1,3 +1,4 @@ +name: eigenstratdatabasetools_eigenstratsnpcoverage channels: - conda-forge - bioconda diff --git a/modules/nf-core/eklipse/environment.yml b/modules/nf-core/eklipse/environment.yml index e6d44436a48..e33007095e3 100644 --- a/modules/nf-core/eklipse/environment.yml +++ b/modules/nf-core/eklipse/environment.yml @@ -1,3 +1,4 @@ +name: eklipse channels: - conda-forge - bioconda diff --git a/modules/nf-core/elprep/filter/environment.yml b/modules/nf-core/elprep/filter/environment.yml index 0d6eb20e01c..88fc4785657 100644 --- a/modules/nf-core/elprep/filter/environment.yml +++ b/modules/nf-core/elprep/filter/environment.yml @@ -1,3 +1,4 @@ +name: elprep_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/elprep/merge/environment.yml b/modules/nf-core/elprep/merge/environment.yml index 0d6eb20e01c..4bfbdb6bc8b 100644 --- a/modules/nf-core/elprep/merge/environment.yml +++ b/modules/nf-core/elprep/merge/environment.yml @@ -1,3 +1,4 @@ +name: elprep_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/elprep/split/environment.yml b/modules/nf-core/elprep/split/environment.yml index 0d6eb20e01c..fad2617b13a 100644 --- a/modules/nf-core/elprep/split/environment.yml +++ b/modules/nf-core/elprep/split/environment.yml @@ -1,3 +1,4 @@ +name: elprep_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/emboss/cons/environment.yml b/modules/nf-core/emboss/cons/environment.yml index 757a1fc169b..84758784eac 100644 --- a/modules/nf-core/emboss/cons/environment.yml +++ b/modules/nf-core/emboss/cons/environment.yml @@ -1,3 +1,4 @@ +name: emboss_cons channels: - conda-forge - bioconda diff --git a/modules/nf-core/emboss/revseq/environment.yml b/modules/nf-core/emboss/revseq/environment.yml index 757a1fc169b..cc8acbdfe67 100644 --- a/modules/nf-core/emboss/revseq/environment.yml +++ b/modules/nf-core/emboss/revseq/environment.yml @@ -1,3 +1,4 @@ +name: emboss_revseq channels: - conda-forge - bioconda diff --git a/modules/nf-core/emboss/seqret/environment.yml b/modules/nf-core/emboss/seqret/environment.yml index 757a1fc169b..5390009c4a1 100644 --- a/modules/nf-core/emboss/seqret/environment.yml +++ b/modules/nf-core/emboss/seqret/environment.yml @@ -1,3 +1,4 @@ +name: emboss_seqret channels: - conda-forge - bioconda diff --git a/modules/nf-core/emmtyper/environment.yml b/modules/nf-core/emmtyper/environment.yml index 8dd1ecb0f62..e82e5086907 100644 --- a/modules/nf-core/emmtyper/environment.yml +++ b/modules/nf-core/emmtyper/environment.yml @@ -1,3 +1,4 @@ +name: emmtyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/endorspy/environment.yml b/modules/nf-core/endorspy/environment.yml index 52c043c5e05..ce790813a4e 100644 --- a/modules/nf-core/endorspy/environment.yml +++ b/modules/nf-core/endorspy/environment.yml @@ -1,3 +1,4 @@ +name: endorspy channels: - conda-forge - bioconda diff --git a/modules/nf-core/ensemblvep/download/environment.yml b/modules/nf-core/ensemblvep/download/environment.yml index d3805c0c050..4d5a9c814b9 100644 --- a/modules/nf-core/ensemblvep/download/environment.yml +++ b/modules/nf-core/ensemblvep/download/environment.yml @@ -1,3 +1,4 @@ +name: ENSEMBLVEP_DOWNLOAD channels: - conda-forge - bioconda diff --git a/modules/nf-core/ensemblvep/environment.yml b/modules/nf-core/ensemblvep/environment.yml index 12e59177707..da79982cfdc 100644 --- a/modules/nf-core/ensemblvep/environment.yml +++ b/modules/nf-core/ensemblvep/environment.yml @@ -1,3 +1,4 @@ +name: # You can use this file to create a conda environment for this module: # conda env create -f environment.yml name: nf-core-vep-108.2 diff --git a/modules/nf-core/ensemblvep/filtervep/environment.yml b/modules/nf-core/ensemblvep/filtervep/environment.yml index d3805c0c050..d84dc89ee0f 100644 --- a/modules/nf-core/ensemblvep/filtervep/environment.yml +++ b/modules/nf-core/ensemblvep/filtervep/environment.yml @@ -1,3 +1,4 @@ +name: ensemblvep_filtervep channels: - conda-forge - bioconda diff --git a/modules/nf-core/ensemblvep/vep/environment.yml b/modules/nf-core/ensemblvep/vep/environment.yml index d3805c0c050..6bfddb257df 100644 --- a/modules/nf-core/ensemblvep/vep/environment.yml +++ b/modules/nf-core/ensemblvep/vep/environment.yml @@ -1,3 +1,4 @@ +name: ENSEMBLVEP_VEP channels: - conda-forge - bioconda diff --git a/modules/nf-core/entrezdirect/esearch/environment.yml b/modules/nf-core/entrezdirect/esearch/environment.yml index 2e61f5c1e3a..3b0472c3d20 100644 --- a/modules/nf-core/entrezdirect/esearch/environment.yml +++ b/modules/nf-core/entrezdirect/esearch/environment.yml @@ -1,3 +1,4 @@ +name: entrezdirect_esearch channels: - conda-forge - bioconda diff --git a/modules/nf-core/entrezdirect/esummary/environment.yml b/modules/nf-core/entrezdirect/esummary/environment.yml index 2e61f5c1e3a..022046e3e43 100644 --- a/modules/nf-core/entrezdirect/esummary/environment.yml +++ b/modules/nf-core/entrezdirect/esummary/environment.yml @@ -1,3 +1,4 @@ +name: entrezdirect_esummary channels: - conda-forge - bioconda diff --git a/modules/nf-core/entrezdirect/xtract/environment.yml b/modules/nf-core/entrezdirect/xtract/environment.yml index 2e61f5c1e3a..ec0abcbde25 100644 --- a/modules/nf-core/entrezdirect/xtract/environment.yml +++ b/modules/nf-core/entrezdirect/xtract/environment.yml @@ -1,3 +1,4 @@ +name: entrezdirect_xtract channels: - conda-forge - bioconda diff --git a/modules/nf-core/epang/place/environment.yml b/modules/nf-core/epang/place/environment.yml index 2537f3d82c1..a8536b1d486 100644 --- a/modules/nf-core/epang/place/environment.yml +++ b/modules/nf-core/epang/place/environment.yml @@ -1,3 +1,4 @@ +name: epang_place channels: - conda-forge - bioconda diff --git a/modules/nf-core/epang/split/environment.yml b/modules/nf-core/epang/split/environment.yml index 2537f3d82c1..5dd7ff7711a 100644 --- a/modules/nf-core/epang/split/environment.yml +++ b/modules/nf-core/epang/split/environment.yml @@ -1,3 +1,4 @@ +name: epang_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/expansionhunter/environment.yml b/modules/nf-core/expansionhunter/environment.yml index 51723d3b0c2..76edd1efb98 100644 --- a/modules/nf-core/expansionhunter/environment.yml +++ b/modules/nf-core/expansionhunter/environment.yml @@ -1,3 +1,4 @@ +name: expansionhunter channels: - conda-forge - bioconda diff --git a/modules/nf-core/expansionhunterdenovo/merge/environment.yml b/modules/nf-core/expansionhunterdenovo/merge/environment.yml index f7908ed3363..3409da29843 100644 --- a/modules/nf-core/expansionhunterdenovo/merge/environment.yml +++ b/modules/nf-core/expansionhunterdenovo/merge/environment.yml @@ -1,3 +1,4 @@ +name: expansionhunterdenovo_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/expansionhunterdenovo/profile/environment.yml b/modules/nf-core/expansionhunterdenovo/profile/environment.yml index f7908ed3363..fe58596b8a7 100644 --- a/modules/nf-core/expansionhunterdenovo/profile/environment.yml +++ b/modules/nf-core/expansionhunterdenovo/profile/environment.yml @@ -1,3 +1,4 @@ +name: expansionhunterdenovo_profile channels: - conda-forge - bioconda diff --git a/modules/nf-core/falco/environment.yml b/modules/nf-core/falco/environment.yml index 57206b55dcb..eeedb5b734d 100644 --- a/modules/nf-core/falco/environment.yml +++ b/modules/nf-core/falco/environment.yml @@ -1,3 +1,4 @@ +name: falco channels: - conda-forge - bioconda diff --git a/modules/nf-core/famsa/align/environment.yml b/modules/nf-core/famsa/align/environment.yml index c1a79db356a..c41cda2af07 100644 --- a/modules/nf-core/famsa/align/environment.yml +++ b/modules/nf-core/famsa/align/environment.yml @@ -1,3 +1,4 @@ +name: famsa_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/famsa/guidetree/environment.yml b/modules/nf-core/famsa/guidetree/environment.yml index c1a79db356a..28be1c7f7fc 100644 --- a/modules/nf-core/famsa/guidetree/environment.yml +++ b/modules/nf-core/famsa/guidetree/environment.yml @@ -1,3 +1,4 @@ +name: famsa_guidetree channels: - conda-forge - bioconda diff --git a/modules/nf-core/faqcs/environment.yml b/modules/nf-core/faqcs/environment.yml index 661ac4e098b..fa58ef19c6f 100644 --- a/modules/nf-core/faqcs/environment.yml +++ b/modules/nf-core/faqcs/environment.yml @@ -1,3 +1,4 @@ +name: faqcs channels: - conda-forge - bioconda diff --git a/modules/nf-core/fargene/environment.yml b/modules/nf-core/fargene/environment.yml index eacce9bf3c9..56629ff4051 100644 --- a/modules/nf-core/fargene/environment.yml +++ b/modules/nf-core/fargene/environment.yml @@ -1,3 +1,4 @@ +name: fargene channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastani/environment.yml b/modules/nf-core/fastani/environment.yml index ce3592eb055..2d8c92e8859 100644 --- a/modules/nf-core/fastani/environment.yml +++ b/modules/nf-core/fastani/environment.yml @@ -1,3 +1,4 @@ +name: fastani channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastawindows/environment.yml b/modules/nf-core/fastawindows/environment.yml index d0fbe72d76d..ce557158c7a 100644 --- a/modules/nf-core/fastawindows/environment.yml +++ b/modules/nf-core/fastawindows/environment.yml @@ -1,3 +1,4 @@ +name: fastawindows channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastk/fastk/environment.yml b/modules/nf-core/fastk/fastk/environment.yml index bcd3a8b1c63..54c932fee2e 100644 --- a/modules/nf-core/fastk/fastk/environment.yml +++ b/modules/nf-core/fastk/fastk/environment.yml @@ -1,3 +1,4 @@ +name: fastk_fastk channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastk/histex/environment.yml b/modules/nf-core/fastk/histex/environment.yml index bcd3a8b1c63..aefa45f4bdd 100644 --- a/modules/nf-core/fastk/histex/environment.yml +++ b/modules/nf-core/fastk/histex/environment.yml @@ -1,3 +1,4 @@ +name: fastk_histex channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastk/merge/environment.yml b/modules/nf-core/fastk/merge/environment.yml index bcd3a8b1c63..7c09dc1a588 100644 --- a/modules/nf-core/fastk/merge/environment.yml +++ b/modules/nf-core/fastk/merge/environment.yml @@ -1,3 +1,4 @@ +name: fastk_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastp/environment.yml b/modules/nf-core/fastp/environment.yml index 19ccec25640..70389e664c2 100644 --- a/modules/nf-core/fastp/environment.yml +++ b/modules/nf-core/fastp/environment.yml @@ -1,3 +1,4 @@ +name: fastp channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastqc/environment.yml b/modules/nf-core/fastqc/environment.yml index f52a53a0fa7..1787b38a9aa 100644 --- a/modules/nf-core/fastqc/environment.yml +++ b/modules/nf-core/fastqc/environment.yml @@ -1,3 +1,4 @@ +name: fastqc channels: - conda-forge - bioconda diff --git a/modules/nf-core/fastqscan/environment.yml b/modules/nf-core/fastqscan/environment.yml index f9ca8401d16..482a73bef8b 100644 --- a/modules/nf-core/fastqscan/environment.yml +++ b/modules/nf-core/fastqscan/environment.yml @@ -1,3 +1,4 @@ +name: fastqscan channels: - conda-forge - bioconda diff --git a/modules/nf-core/fasttree/environment.yml b/modules/nf-core/fasttree/environment.yml index 342c2580eaa..26509484c92 100644 --- a/modules/nf-core/fasttree/environment.yml +++ b/modules/nf-core/fasttree/environment.yml @@ -1,3 +1,4 @@ +name: fasttree channels: - conda-forge - bioconda diff --git a/modules/nf-core/fcs/fcsadaptor/environment.yml b/modules/nf-core/fcs/fcsadaptor/environment.yml index bcd3a8b1c63..515d218aedb 100644 --- a/modules/nf-core/fcs/fcsadaptor/environment.yml +++ b/modules/nf-core/fcs/fcsadaptor/environment.yml @@ -1,3 +1,4 @@ +name: fcs_fcsadaptor channels: - conda-forge - bioconda diff --git a/modules/nf-core/fcs/fcsgx/environment.yml b/modules/nf-core/fcs/fcsgx/environment.yml index bcd3a8b1c63..75e5b79fa8d 100644 --- a/modules/nf-core/fcs/fcsgx/environment.yml +++ b/modules/nf-core/fcs/fcsgx/environment.yml @@ -1,3 +1,4 @@ +name: fcs_fcsgx channels: - conda-forge - bioconda diff --git a/modules/nf-core/ffq/environment.yml b/modules/nf-core/ffq/environment.yml index c1955ef7c3a..e2a3029eb9a 100644 --- a/modules/nf-core/ffq/environment.yml +++ b/modules/nf-core/ffq/environment.yml @@ -1,3 +1,4 @@ +name: ffq channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/callduplexconsensusreads/environment.yml b/modules/nf-core/fgbio/callduplexconsensusreads/environment.yml index d64c6844b34..c45f63d8894 100644 --- a/modules/nf-core/fgbio/callduplexconsensusreads/environment.yml +++ b/modules/nf-core/fgbio/callduplexconsensusreads/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_callduplexconsensusreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/callmolecularconsensusreads/environment.yml b/modules/nf-core/fgbio/callmolecularconsensusreads/environment.yml index d64c6844b34..1429e478ecf 100644 --- a/modules/nf-core/fgbio/callmolecularconsensusreads/environment.yml +++ b/modules/nf-core/fgbio/callmolecularconsensusreads/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_callmolecularconsensusreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/fastqtobam/environment.yml b/modules/nf-core/fgbio/fastqtobam/environment.yml index d64c6844b34..f5f19925819 100644 --- a/modules/nf-core/fgbio/fastqtobam/environment.yml +++ b/modules/nf-core/fgbio/fastqtobam/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_fastqtobam channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/filterconsensusreads/environment.yml b/modules/nf-core/fgbio/filterconsensusreads/environment.yml index d64c6844b34..262571524b7 100644 --- a/modules/nf-core/fgbio/filterconsensusreads/environment.yml +++ b/modules/nf-core/fgbio/filterconsensusreads/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_filterconsensusreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/groupreadsbyumi/environment.yml b/modules/nf-core/fgbio/groupreadsbyumi/environment.yml index d64c6844b34..58e37bf6bda 100644 --- a/modules/nf-core/fgbio/groupreadsbyumi/environment.yml +++ b/modules/nf-core/fgbio/groupreadsbyumi/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_groupreadsbyumi channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/sortbam/environment.yml b/modules/nf-core/fgbio/sortbam/environment.yml index d64c6844b34..ddc8a419f7d 100644 --- a/modules/nf-core/fgbio/sortbam/environment.yml +++ b/modules/nf-core/fgbio/sortbam/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_sortbam channels: - conda-forge - bioconda diff --git a/modules/nf-core/fgbio/zipperbams/environment.yml b/modules/nf-core/fgbio/zipperbams/environment.yml index d64c6844b34..6f32477f1b0 100644 --- a/modules/nf-core/fgbio/zipperbams/environment.yml +++ b/modules/nf-core/fgbio/zipperbams/environment.yml @@ -1,3 +1,4 @@ +name: fgbio_zipperbams channels: - conda-forge - bioconda diff --git a/modules/nf-core/filtlong/environment.yml b/modules/nf-core/filtlong/environment.yml index 8071692472d..0fb7e8b4313 100644 --- a/modules/nf-core/filtlong/environment.yml +++ b/modules/nf-core/filtlong/environment.yml @@ -1,3 +1,4 @@ +name: filtlong channels: - conda-forge - bioconda diff --git a/modules/nf-core/flash/environment.yml b/modules/nf-core/flash/environment.yml index 2e510dc1061..c958b2d8b69 100644 --- a/modules/nf-core/flash/environment.yml +++ b/modules/nf-core/flash/environment.yml @@ -1,3 +1,4 @@ +name: flash channels: - conda-forge - bioconda diff --git a/modules/nf-core/flye/environment.yml b/modules/nf-core/flye/environment.yml index f5364d5b787..958544992b6 100644 --- a/modules/nf-core/flye/environment.yml +++ b/modules/nf-core/flye/environment.yml @@ -1,3 +1,4 @@ +name: flye channels: - conda-forge - bioconda diff --git a/modules/nf-core/fq/generate/environment.yml b/modules/nf-core/fq/generate/environment.yml index c5a483996cb..7ed58f5ac29 100644 --- a/modules/nf-core/fq/generate/environment.yml +++ b/modules/nf-core/fq/generate/environment.yml @@ -1,3 +1,4 @@ +name: fq_generate channels: - conda-forge - bioconda diff --git a/modules/nf-core/fq/lint/environment.yml b/modules/nf-core/fq/lint/environment.yml index c5a483996cb..66145f4c9ec 100644 --- a/modules/nf-core/fq/lint/environment.yml +++ b/modules/nf-core/fq/lint/environment.yml @@ -1,3 +1,4 @@ +name: fq_lint channels: - conda-forge - bioconda diff --git a/modules/nf-core/fq/subsample/environment.yml b/modules/nf-core/fq/subsample/environment.yml index c5a483996cb..c588de38ab1 100644 --- a/modules/nf-core/fq/subsample/environment.yml +++ b/modules/nf-core/fq/subsample/environment.yml @@ -1,3 +1,4 @@ +name: fq_subsample channels: - conda-forge - bioconda diff --git a/modules/nf-core/fqtk/environment.yml b/modules/nf-core/fqtk/environment.yml index 470b7dff2db..1ea15744398 100644 --- a/modules/nf-core/fqtk/environment.yml +++ b/modules/nf-core/fqtk/environment.yml @@ -1,3 +1,4 @@ +name: fqtk channels: - conda-forge - bioconda diff --git a/modules/nf-core/freebayes/environment.yml b/modules/nf-core/freebayes/environment.yml index b074f213f46..6846080a2fc 100644 --- a/modules/nf-core/freebayes/environment.yml +++ b/modules/nf-core/freebayes/environment.yml @@ -1,3 +1,4 @@ +name: freebayes channels: - conda-forge - bioconda diff --git a/modules/nf-core/freyja/boot/environment.yml b/modules/nf-core/freyja/boot/environment.yml index 2373850910d..737f37258a5 100644 --- a/modules/nf-core/freyja/boot/environment.yml +++ b/modules/nf-core/freyja/boot/environment.yml @@ -1,3 +1,4 @@ +name: freyja_boot channels: - conda-forge - bioconda diff --git a/modules/nf-core/freyja/demix/environment.yml b/modules/nf-core/freyja/demix/environment.yml index 2373850910d..b5e69476e79 100644 --- a/modules/nf-core/freyja/demix/environment.yml +++ b/modules/nf-core/freyja/demix/environment.yml @@ -1,3 +1,4 @@ +name: freyja_demix channels: - conda-forge - bioconda diff --git a/modules/nf-core/freyja/update/environment.yml b/modules/nf-core/freyja/update/environment.yml index 2373850910d..97f47cdea95 100644 --- a/modules/nf-core/freyja/update/environment.yml +++ b/modules/nf-core/freyja/update/environment.yml @@ -1,3 +1,4 @@ +name: freyja_update channels: - conda-forge - bioconda diff --git a/modules/nf-core/freyja/variants/environment.yml b/modules/nf-core/freyja/variants/environment.yml index 2373850910d..f015ff4eeac 100644 --- a/modules/nf-core/freyja/variants/environment.yml +++ b/modules/nf-core/freyja/variants/environment.yml @@ -1,3 +1,4 @@ +name: freyja_variants channels: - conda-forge - bioconda diff --git a/modules/nf-core/galah/environment.yml b/modules/nf-core/galah/environment.yml index 88118116075..a7c3169a634 100644 --- a/modules/nf-core/galah/environment.yml +++ b/modules/nf-core/galah/environment.yml @@ -1,3 +1,4 @@ +name: galah channels: - conda-forge - bioconda diff --git a/modules/nf-core/gamma/gamma/environment.yml b/modules/nf-core/gamma/gamma/environment.yml index c3b804d542b..bd2ab25e690 100644 --- a/modules/nf-core/gamma/gamma/environment.yml +++ b/modules/nf-core/gamma/gamma/environment.yml @@ -1,3 +1,4 @@ +name: gamma_gamma channels: - conda-forge - bioconda diff --git a/modules/nf-core/gangstr/environment.yml b/modules/nf-core/gangstr/environment.yml index 01ff2234b73..2ae330e9bcd 100644 --- a/modules/nf-core/gangstr/environment.yml +++ b/modules/nf-core/gangstr/environment.yml @@ -1,3 +1,4 @@ +name: gangstr channels: - conda-forge - bioconda diff --git a/modules/nf-core/ganon/buildcustom/environment.yml b/modules/nf-core/ganon/buildcustom/environment.yml index 625c22d429e..916e485e18d 100644 --- a/modules/nf-core/ganon/buildcustom/environment.yml +++ b/modules/nf-core/ganon/buildcustom/environment.yml @@ -1,3 +1,4 @@ +name: ganon_buildcustom channels: - conda-forge - bioconda diff --git a/modules/nf-core/ganon/classify/environment.yml b/modules/nf-core/ganon/classify/environment.yml index 625c22d429e..7336924ff12 100644 --- a/modules/nf-core/ganon/classify/environment.yml +++ b/modules/nf-core/ganon/classify/environment.yml @@ -1,3 +1,4 @@ +name: ganon_classify channels: - conda-forge - bioconda diff --git a/modules/nf-core/ganon/report/environment.yml b/modules/nf-core/ganon/report/environment.yml index 625c22d429e..fed2920973e 100644 --- a/modules/nf-core/ganon/report/environment.yml +++ b/modules/nf-core/ganon/report/environment.yml @@ -1,3 +1,4 @@ +name: ganon_report channels: - conda-forge - bioconda diff --git a/modules/nf-core/ganon/table/environment.yml b/modules/nf-core/ganon/table/environment.yml index 625c22d429e..331da379841 100644 --- a/modules/nf-core/ganon/table/environment.yml +++ b/modules/nf-core/ganon/table/environment.yml @@ -1,3 +1,4 @@ +name: ganon_table channels: - conda-forge - bioconda diff --git a/modules/nf-core/gappa/examineassign/environment.yml b/modules/nf-core/gappa/examineassign/environment.yml index dbce99719dd..4930e72458a 100644 --- a/modules/nf-core/gappa/examineassign/environment.yml +++ b/modules/nf-core/gappa/examineassign/environment.yml @@ -1,3 +1,4 @@ +name: gappa_examineassign channels: - conda-forge - bioconda diff --git a/modules/nf-core/gappa/examinegraft/environment.yml b/modules/nf-core/gappa/examinegraft/environment.yml index dbce99719dd..c22460d204b 100644 --- a/modules/nf-core/gappa/examinegraft/environment.yml +++ b/modules/nf-core/gappa/examinegraft/environment.yml @@ -1,3 +1,4 @@ +name: gappa_examinegraft channels: - conda-forge - bioconda diff --git a/modules/nf-core/gappa/examineheattree/environment.yml b/modules/nf-core/gappa/examineheattree/environment.yml index dbce99719dd..a5ee8d48f0d 100644 --- a/modules/nf-core/gappa/examineheattree/environment.yml +++ b/modules/nf-core/gappa/examineheattree/environment.yml @@ -1,3 +1,4 @@ +name: gappa_examineheattree channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk/indelrealigner/environment.yml b/modules/nf-core/gatk/indelrealigner/environment.yml index c163b13026f..5a30ceb74fe 100644 --- a/modules/nf-core/gatk/indelrealigner/environment.yml +++ b/modules/nf-core/gatk/indelrealigner/environment.yml @@ -1,3 +1,4 @@ +name: gatk_indelrealigner channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk/realignertargetcreator/environment.yml b/modules/nf-core/gatk/realignertargetcreator/environment.yml index c163b13026f..68ca7b5433f 100644 --- a/modules/nf-core/gatk/realignertargetcreator/environment.yml +++ b/modules/nf-core/gatk/realignertargetcreator/environment.yml @@ -1,3 +1,4 @@ +name: gatk_realignertargetcreator channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk/unifiedgenotyper/environment.yml b/modules/nf-core/gatk/unifiedgenotyper/environment.yml index c163b13026f..7201ece736c 100644 --- a/modules/nf-core/gatk/unifiedgenotyper/environment.yml +++ b/modules/nf-core/gatk/unifiedgenotyper/environment.yml @@ -1,3 +1,4 @@ +name: gatk_unifiedgenotyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/annotateintervals/environment.yml b/modules/nf-core/gatk4/annotateintervals/environment.yml index 16241b6d944..6e915962020 100644 --- a/modules/nf-core/gatk4/annotateintervals/environment.yml +++ b/modules/nf-core/gatk4/annotateintervals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_annotateintervals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/applybqsr/environment.yml b/modules/nf-core/gatk4/applybqsr/environment.yml index 16241b6d944..a6900991235 100644 --- a/modules/nf-core/gatk4/applybqsr/environment.yml +++ b/modules/nf-core/gatk4/applybqsr/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_applybqsr channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/applyvqsr/environment.yml b/modules/nf-core/gatk4/applyvqsr/environment.yml index 16241b6d944..e6407689572 100644 --- a/modules/nf-core/gatk4/applyvqsr/environment.yml +++ b/modules/nf-core/gatk4/applyvqsr/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_applyvqsr channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/asereadcounter/environment.yml b/modules/nf-core/gatk4/asereadcounter/environment.yml index 16241b6d944..1064e5a9c6a 100644 --- a/modules/nf-core/gatk4/asereadcounter/environment.yml +++ b/modules/nf-core/gatk4/asereadcounter/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_asereadcounter channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/baserecalibrator/environment.yml b/modules/nf-core/gatk4/baserecalibrator/environment.yml index 16241b6d944..6863fb1712d 100644 --- a/modules/nf-core/gatk4/baserecalibrator/environment.yml +++ b/modules/nf-core/gatk4/baserecalibrator/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_baserecalibrator channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/bedtointervallist/environment.yml b/modules/nf-core/gatk4/bedtointervallist/environment.yml index 16241b6d944..e7cb4280e0c 100644 --- a/modules/nf-core/gatk4/bedtointervallist/environment.yml +++ b/modules/nf-core/gatk4/bedtointervallist/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_bedtointervallist channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/calculatecontamination/environment.yml b/modules/nf-core/gatk4/calculatecontamination/environment.yml index 16241b6d944..d5e45ebe421 100644 --- a/modules/nf-core/gatk4/calculatecontamination/environment.yml +++ b/modules/nf-core/gatk4/calculatecontamination/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_calculatecontamination channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/calibratedragstrmodel/environment.yml b/modules/nf-core/gatk4/calibratedragstrmodel/environment.yml index 16241b6d944..ff71d5aa4a9 100644 --- a/modules/nf-core/gatk4/calibratedragstrmodel/environment.yml +++ b/modules/nf-core/gatk4/calibratedragstrmodel/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_calibratedragstrmodel channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/cnnscorevariants/environment.yml b/modules/nf-core/gatk4/cnnscorevariants/environment.yml index bcd3a8b1c63..12cc34ba668 100644 --- a/modules/nf-core/gatk4/cnnscorevariants/environment.yml +++ b/modules/nf-core/gatk4/cnnscorevariants/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_cnnscorevariants channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/collectreadcounts/environment.yml b/modules/nf-core/gatk4/collectreadcounts/environment.yml index 16241b6d944..ebc838009b3 100644 --- a/modules/nf-core/gatk4/collectreadcounts/environment.yml +++ b/modules/nf-core/gatk4/collectreadcounts/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_collectreadcounts channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/collectsvevidence/environment.yml b/modules/nf-core/gatk4/collectsvevidence/environment.yml index 16241b6d944..dd03cba32b3 100644 --- a/modules/nf-core/gatk4/collectsvevidence/environment.yml +++ b/modules/nf-core/gatk4/collectsvevidence/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_collectsvevidence channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/combinegvcfs/environment.yml b/modules/nf-core/gatk4/combinegvcfs/environment.yml index 16241b6d944..c1205a35219 100644 --- a/modules/nf-core/gatk4/combinegvcfs/environment.yml +++ b/modules/nf-core/gatk4/combinegvcfs/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_combinegvcfs channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/composestrtablefile/environment.yml b/modules/nf-core/gatk4/composestrtablefile/environment.yml index 16241b6d944..eb0ab5bb286 100644 --- a/modules/nf-core/gatk4/composestrtablefile/environment.yml +++ b/modules/nf-core/gatk4/composestrtablefile/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_composestrtablefile channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/condensedepthevidence/environment.yml b/modules/nf-core/gatk4/condensedepthevidence/environment.yml index 16241b6d944..ad35985868a 100644 --- a/modules/nf-core/gatk4/condensedepthevidence/environment.yml +++ b/modules/nf-core/gatk4/condensedepthevidence/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_condensedepthevidence channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml b/modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml index 16241b6d944..ea5b9bf70c2 100644 --- a/modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml +++ b/modules/nf-core/gatk4/createreadcountpanelofnormals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_createreadcountpanelofnormals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/createsequencedictionary/environment.yml b/modules/nf-core/gatk4/createsequencedictionary/environment.yml index 16241b6d944..db663e148fa 100644 --- a/modules/nf-core/gatk4/createsequencedictionary/environment.yml +++ b/modules/nf-core/gatk4/createsequencedictionary/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_createsequencedictionary channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml b/modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml index 16241b6d944..7255e409a52 100644 --- a/modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml +++ b/modules/nf-core/gatk4/createsomaticpanelofnormals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_createsomaticpanelofnormals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/denoisereadcounts/environment.yml b/modules/nf-core/gatk4/denoisereadcounts/environment.yml index 16241b6d944..bcb2ff35f19 100644 --- a/modules/nf-core/gatk4/denoisereadcounts/environment.yml +++ b/modules/nf-core/gatk4/denoisereadcounts/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_denoisereadcounts channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml b/modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml index bcd3a8b1c63..c30de0901a3 100644 --- a/modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml +++ b/modules/nf-core/gatk4/determinegermlinecontigploidy/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_determinegermlinecontigploidy channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml b/modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml index 16241b6d944..fabb6f2ba4f 100644 --- a/modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml +++ b/modules/nf-core/gatk4/estimatelibrarycomplexity/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_estimatelibrarycomplexity channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/fastqtosam/environment.yml b/modules/nf-core/gatk4/fastqtosam/environment.yml index 16241b6d944..b57b446a2b2 100644 --- a/modules/nf-core/gatk4/fastqtosam/environment.yml +++ b/modules/nf-core/gatk4/fastqtosam/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_fastqtosam channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/filterintervals/environment.yml b/modules/nf-core/gatk4/filterintervals/environment.yml index 16241b6d944..a1d59f208d9 100644 --- a/modules/nf-core/gatk4/filterintervals/environment.yml +++ b/modules/nf-core/gatk4/filterintervals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_filterintervals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/filtermutectcalls/environment.yml b/modules/nf-core/gatk4/filtermutectcalls/environment.yml index 16241b6d944..8057d765d57 100644 --- a/modules/nf-core/gatk4/filtermutectcalls/environment.yml +++ b/modules/nf-core/gatk4/filtermutectcalls/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_filtermutectcalls channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/filtervarianttranches/environment.yml b/modules/nf-core/gatk4/filtervarianttranches/environment.yml index 16241b6d944..faeea8ddb06 100644 --- a/modules/nf-core/gatk4/filtervarianttranches/environment.yml +++ b/modules/nf-core/gatk4/filtervarianttranches/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_filtervarianttranches channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/gatherbqsrreports/environment.yml b/modules/nf-core/gatk4/gatherbqsrreports/environment.yml index 16241b6d944..928ac76e6be 100644 --- a/modules/nf-core/gatk4/gatherbqsrreports/environment.yml +++ b/modules/nf-core/gatk4/gatherbqsrreports/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_gatherbqsrreports channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/gatherpileupsummaries/environment.yml b/modules/nf-core/gatk4/gatherpileupsummaries/environment.yml index 16241b6d944..1a2ebf57619 100644 --- a/modules/nf-core/gatk4/gatherpileupsummaries/environment.yml +++ b/modules/nf-core/gatk4/gatherpileupsummaries/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_gatherpileupsummaries channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/genomicsdbimport/environment.yml b/modules/nf-core/gatk4/genomicsdbimport/environment.yml index 16241b6d944..ce3f941694d 100644 --- a/modules/nf-core/gatk4/genomicsdbimport/environment.yml +++ b/modules/nf-core/gatk4/genomicsdbimport/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_genomicsdbimport channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/genotypegvcfs/environment.yml b/modules/nf-core/gatk4/genotypegvcfs/environment.yml index 16241b6d944..49f213790d5 100644 --- a/modules/nf-core/gatk4/genotypegvcfs/environment.yml +++ b/modules/nf-core/gatk4/genotypegvcfs/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_genotypegvcfs channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/germlinecnvcaller/environment.yml b/modules/nf-core/gatk4/germlinecnvcaller/environment.yml index bcd3a8b1c63..02ce4dd371f 100644 --- a/modules/nf-core/gatk4/germlinecnvcaller/environment.yml +++ b/modules/nf-core/gatk4/germlinecnvcaller/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_germlinecnvcaller channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/getpileupsummaries/environment.yml b/modules/nf-core/gatk4/getpileupsummaries/environment.yml index 16241b6d944..d650467cf83 100644 --- a/modules/nf-core/gatk4/getpileupsummaries/environment.yml +++ b/modules/nf-core/gatk4/getpileupsummaries/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_getpileupsummaries channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/haplotypecaller/environment.yml b/modules/nf-core/gatk4/haplotypecaller/environment.yml index 16241b6d944..0c8f32fa63b 100644 --- a/modules/nf-core/gatk4/haplotypecaller/environment.yml +++ b/modules/nf-core/gatk4/haplotypecaller/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_haplotypecaller channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/indexfeaturefile/environment.yml b/modules/nf-core/gatk4/indexfeaturefile/environment.yml index 16241b6d944..95beac68f53 100644 --- a/modules/nf-core/gatk4/indexfeaturefile/environment.yml +++ b/modules/nf-core/gatk4/indexfeaturefile/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_indexfeaturefile channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/intervallisttobed/environment.yml b/modules/nf-core/gatk4/intervallisttobed/environment.yml index 16241b6d944..06d9f0e9c70 100644 --- a/modules/nf-core/gatk4/intervallisttobed/environment.yml +++ b/modules/nf-core/gatk4/intervallisttobed/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_intervallisttobed channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/intervallisttools/environment.yml b/modules/nf-core/gatk4/intervallisttools/environment.yml index 16241b6d944..b70e5e14d4c 100644 --- a/modules/nf-core/gatk4/intervallisttools/environment.yml +++ b/modules/nf-core/gatk4/intervallisttools/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_intervallisttools channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/learnreadorientationmodel/environment.yml b/modules/nf-core/gatk4/learnreadorientationmodel/environment.yml index 16241b6d944..d1c35caf83d 100644 --- a/modules/nf-core/gatk4/learnreadorientationmodel/environment.yml +++ b/modules/nf-core/gatk4/learnreadorientationmodel/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_learnreadorientationmodel channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml b/modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml index 16241b6d944..076064b879f 100644 --- a/modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml +++ b/modules/nf-core/gatk4/leftalignandtrimvariants/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_leftalignandtrimvariants channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/markduplicates/environment.yml b/modules/nf-core/gatk4/markduplicates/environment.yml index 8c0c6bb2791..9adad104d8c 100644 --- a/modules/nf-core/gatk4/markduplicates/environment.yml +++ b/modules/nf-core/gatk4/markduplicates/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_markduplicates channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/mergebamalignment/environment.yml b/modules/nf-core/gatk4/mergebamalignment/environment.yml index 16241b6d944..08a1df23637 100644 --- a/modules/nf-core/gatk4/mergebamalignment/environment.yml +++ b/modules/nf-core/gatk4/mergebamalignment/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_mergebamalignment channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/mergemutectstats/environment.yml b/modules/nf-core/gatk4/mergemutectstats/environment.yml index 16241b6d944..dd132c3a3dd 100644 --- a/modules/nf-core/gatk4/mergemutectstats/environment.yml +++ b/modules/nf-core/gatk4/mergemutectstats/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_mergemutectstats channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/mergevcfs/environment.yml b/modules/nf-core/gatk4/mergevcfs/environment.yml index 16241b6d944..d6c3e51a9fd 100644 --- a/modules/nf-core/gatk4/mergevcfs/environment.yml +++ b/modules/nf-core/gatk4/mergevcfs/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_mergevcfs channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/mutect2/environment.yml b/modules/nf-core/gatk4/mutect2/environment.yml index 16241b6d944..54da66ce575 100644 --- a/modules/nf-core/gatk4/mutect2/environment.yml +++ b/modules/nf-core/gatk4/mutect2/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_mutect2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml index bcd3a8b1c63..a515d065316 100644 --- a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml +++ b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_postprocessgermlinecnvcalls channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/preprocessintervals/environment.yml b/modules/nf-core/gatk4/preprocessintervals/environment.yml index 16241b6d944..542d9efdddd 100644 --- a/modules/nf-core/gatk4/preprocessintervals/environment.yml +++ b/modules/nf-core/gatk4/preprocessintervals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_preprocessintervals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/printreads/environment.yml b/modules/nf-core/gatk4/printreads/environment.yml index 16241b6d944..7387f5d1146 100644 --- a/modules/nf-core/gatk4/printreads/environment.yml +++ b/modules/nf-core/gatk4/printreads/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_printreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/printsvevidence/environment.yml b/modules/nf-core/gatk4/printsvevidence/environment.yml index 16241b6d944..e7b717c7f9e 100644 --- a/modules/nf-core/gatk4/printsvevidence/environment.yml +++ b/modules/nf-core/gatk4/printsvevidence/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_printsvevidence channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/reblockgvcf/environment.yml b/modules/nf-core/gatk4/reblockgvcf/environment.yml index 16241b6d944..ef5a7486b74 100644 --- a/modules/nf-core/gatk4/reblockgvcf/environment.yml +++ b/modules/nf-core/gatk4/reblockgvcf/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_reblockgvcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/revertsam/environment.yml b/modules/nf-core/gatk4/revertsam/environment.yml index 16241b6d944..0ce7dddce92 100644 --- a/modules/nf-core/gatk4/revertsam/environment.yml +++ b/modules/nf-core/gatk4/revertsam/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_revertsam channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/samtofastq/environment.yml b/modules/nf-core/gatk4/samtofastq/environment.yml index 16241b6d944..584c3d83d7b 100644 --- a/modules/nf-core/gatk4/samtofastq/environment.yml +++ b/modules/nf-core/gatk4/samtofastq/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_samtofastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/selectvariants/environment.yml b/modules/nf-core/gatk4/selectvariants/environment.yml index 16241b6d944..404bafde9ba 100644 --- a/modules/nf-core/gatk4/selectvariants/environment.yml +++ b/modules/nf-core/gatk4/selectvariants/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_selectvariants channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/shiftfasta/environment.yml b/modules/nf-core/gatk4/shiftfasta/environment.yml index 16241b6d944..381a22c0340 100644 --- a/modules/nf-core/gatk4/shiftfasta/environment.yml +++ b/modules/nf-core/gatk4/shiftfasta/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_shiftfasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/sitedepthtobaf/environment.yml b/modules/nf-core/gatk4/sitedepthtobaf/environment.yml index 16241b6d944..1541c121f6a 100644 --- a/modules/nf-core/gatk4/sitedepthtobaf/environment.yml +++ b/modules/nf-core/gatk4/sitedepthtobaf/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_sitedepthtobaf channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/splitcram/environment.yml b/modules/nf-core/gatk4/splitcram/environment.yml index 16241b6d944..7ac7f57d241 100644 --- a/modules/nf-core/gatk4/splitcram/environment.yml +++ b/modules/nf-core/gatk4/splitcram/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_splitcram channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/splitintervals/environment.yml b/modules/nf-core/gatk4/splitintervals/environment.yml index 16241b6d944..6b347417358 100644 --- a/modules/nf-core/gatk4/splitintervals/environment.yml +++ b/modules/nf-core/gatk4/splitintervals/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_splitintervals channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/splitncigarreads/environment.yml b/modules/nf-core/gatk4/splitncigarreads/environment.yml index 16241b6d944..50b79217e63 100644 --- a/modules/nf-core/gatk4/splitncigarreads/environment.yml +++ b/modules/nf-core/gatk4/splitncigarreads/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_splitncigarreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/svannotate/environment.yml b/modules/nf-core/gatk4/svannotate/environment.yml index 16241b6d944..3bbb5bbe1f6 100644 --- a/modules/nf-core/gatk4/svannotate/environment.yml +++ b/modules/nf-core/gatk4/svannotate/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_svannotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/svcluster/environment.yml b/modules/nf-core/gatk4/svcluster/environment.yml index 16241b6d944..1b9535b8d9c 100644 --- a/modules/nf-core/gatk4/svcluster/environment.yml +++ b/modules/nf-core/gatk4/svcluster/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_svcluster channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/variantfiltration/environment.yml b/modules/nf-core/gatk4/variantfiltration/environment.yml index 16241b6d944..cc16bc0e26e 100644 --- a/modules/nf-core/gatk4/variantfiltration/environment.yml +++ b/modules/nf-core/gatk4/variantfiltration/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_variantfiltration channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4/variantrecalibrator/environment.yml b/modules/nf-core/gatk4/variantrecalibrator/environment.yml index 16241b6d944..619208a56d8 100644 --- a/modules/nf-core/gatk4/variantrecalibrator/environment.yml +++ b/modules/nf-core/gatk4/variantrecalibrator/environment.yml @@ -1,3 +1,4 @@ +name: gatk4_variantrecalibrator channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4spark/applybqsr/environment.yml b/modules/nf-core/gatk4spark/applybqsr/environment.yml index 821728a6622..709dd488c90 100644 --- a/modules/nf-core/gatk4spark/applybqsr/environment.yml +++ b/modules/nf-core/gatk4spark/applybqsr/environment.yml @@ -1,3 +1,4 @@ +name: gatk4spark_applybqsr channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4spark/baserecalibrator/environment.yml b/modules/nf-core/gatk4spark/baserecalibrator/environment.yml index 821728a6622..bf2568a2a88 100644 --- a/modules/nf-core/gatk4spark/baserecalibrator/environment.yml +++ b/modules/nf-core/gatk4spark/baserecalibrator/environment.yml @@ -1,3 +1,4 @@ +name: gatk4spark_baserecalibrator channels: - conda-forge - bioconda diff --git a/modules/nf-core/gatk4spark/markduplicates/environment.yml b/modules/nf-core/gatk4spark/markduplicates/environment.yml index 821728a6622..3e33d7fe3d3 100644 --- a/modules/nf-core/gatk4spark/markduplicates/environment.yml +++ b/modules/nf-core/gatk4spark/markduplicates/environment.yml @@ -1,3 +1,4 @@ +name: gatk4spark_markduplicates channels: - conda-forge - bioconda diff --git a/modules/nf-core/gawk/environment.yml b/modules/nf-core/gawk/environment.yml index 710fbfd120a..34513c7f4a5 100644 --- a/modules/nf-core/gawk/environment.yml +++ b/modules/nf-core/gawk/environment.yml @@ -1,3 +1,4 @@ +name: gawk channels: - conda-forge - bioconda diff --git a/modules/nf-core/gecco/run/environment.yml b/modules/nf-core/gecco/run/environment.yml index 835812784e0..b4b8355b1a5 100644 --- a/modules/nf-core/gecco/run/environment.yml +++ b/modules/nf-core/gecco/run/environment.yml @@ -1,3 +1,4 @@ +name: gecco_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/gem2/gem2bedmappability/environment.yml b/modules/nf-core/gem2/gem2bedmappability/environment.yml index a48ca7d350e..4977e7e52bc 100644 --- a/modules/nf-core/gem2/gem2bedmappability/environment.yml +++ b/modules/nf-core/gem2/gem2bedmappability/environment.yml @@ -1,3 +1,4 @@ +name: gem2_gem2bedmappability channels: - conda-forge - bioconda diff --git a/modules/nf-core/gem2/gemindexer/environment.yml b/modules/nf-core/gem2/gemindexer/environment.yml index a48ca7d350e..58aca5dc8ee 100644 --- a/modules/nf-core/gem2/gemindexer/environment.yml +++ b/modules/nf-core/gem2/gemindexer/environment.yml @@ -1,3 +1,4 @@ +name: gem2_gemindexer channels: - conda-forge - bioconda diff --git a/modules/nf-core/gem2/gemmappability/environment.yml b/modules/nf-core/gem2/gemmappability/environment.yml index a48ca7d350e..d9846ad5e7d 100644 --- a/modules/nf-core/gem2/gemmappability/environment.yml +++ b/modules/nf-core/gem2/gemmappability/environment.yml @@ -1,3 +1,4 @@ +name: gem2_gemmappability channels: - conda-forge - bioconda diff --git a/modules/nf-core/gem3/gem3indexer/environment.yml b/modules/nf-core/gem3/gem3indexer/environment.yml index 620e5dd95f2..980027d01ba 100644 --- a/modules/nf-core/gem3/gem3indexer/environment.yml +++ b/modules/nf-core/gem3/gem3indexer/environment.yml @@ -1,3 +1,4 @@ +name: gem3_gem3indexer channels: - conda-forge - bioconda diff --git a/modules/nf-core/genescopefk/environment.yml b/modules/nf-core/genescopefk/environment.yml index bcd3a8b1c63..79cdc3177b3 100644 --- a/modules/nf-core/genescopefk/environment.yml +++ b/modules/nf-core/genescopefk/environment.yml @@ -1,3 +1,4 @@ +name: genescopefk channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmap/index/environment.yml b/modules/nf-core/genmap/index/environment.yml index cb26e3d7791..a5c2a87aecd 100644 --- a/modules/nf-core/genmap/index/environment.yml +++ b/modules/nf-core/genmap/index/environment.yml @@ -1,3 +1,4 @@ +name: genmap_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmap/map/environment.yml b/modules/nf-core/genmap/map/environment.yml index cb26e3d7791..a36a737e49b 100644 --- a/modules/nf-core/genmap/map/environment.yml +++ b/modules/nf-core/genmap/map/environment.yml @@ -1,3 +1,4 @@ +name: genmap_map channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmod/annotate/environment.yml b/modules/nf-core/genmod/annotate/environment.yml index cb947cc08cb..6ca5501452b 100644 --- a/modules/nf-core/genmod/annotate/environment.yml +++ b/modules/nf-core/genmod/annotate/environment.yml @@ -1,3 +1,4 @@ +name: genmod_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmod/compound/environment.yml b/modules/nf-core/genmod/compound/environment.yml index cb947cc08cb..565143f9943 100644 --- a/modules/nf-core/genmod/compound/environment.yml +++ b/modules/nf-core/genmod/compound/environment.yml @@ -1,3 +1,4 @@ +name: genmod_compound channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmod/models/environment.yml b/modules/nf-core/genmod/models/environment.yml index 8230973eec5..ff0de8223dc 100644 --- a/modules/nf-core/genmod/models/environment.yml +++ b/modules/nf-core/genmod/models/environment.yml @@ -1,3 +1,4 @@ +name: genmod_models channels: - conda-forge - bioconda diff --git a/modules/nf-core/genmod/score/environment.yml b/modules/nf-core/genmod/score/environment.yml index cb947cc08cb..a09ee359210 100644 --- a/modules/nf-core/genmod/score/environment.yml +++ b/modules/nf-core/genmod/score/environment.yml @@ -1,3 +1,4 @@ +name: genmod_score channels: - conda-forge - bioconda diff --git a/modules/nf-core/genomad/download/environment.yml b/modules/nf-core/genomad/download/environment.yml index e5da95f7648..eacd45d0f81 100644 --- a/modules/nf-core/genomad/download/environment.yml +++ b/modules/nf-core/genomad/download/environment.yml @@ -1,3 +1,4 @@ +name: genomad_download channels: - conda-forge - bioconda diff --git a/modules/nf-core/genomad/endtoend/environment.yml b/modules/nf-core/genomad/endtoend/environment.yml index e5da95f7648..11e50f7945e 100644 --- a/modules/nf-core/genomad/endtoend/environment.yml +++ b/modules/nf-core/genomad/endtoend/environment.yml @@ -1,3 +1,4 @@ +name: genomad_endtoend channels: - conda-forge - bioconda diff --git a/modules/nf-core/genomescope2/environment.yml b/modules/nf-core/genomescope2/environment.yml index c17ae8394ae..e085ab40455 100644 --- a/modules/nf-core/genomescope2/environment.yml +++ b/modules/nf-core/genomescope2/environment.yml @@ -1,3 +1,4 @@ +name: genomescope2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/genotyphi/parse/environment.yml b/modules/nf-core/genotyphi/parse/environment.yml index 71ee489e15c..9c1c38d5fe0 100644 --- a/modules/nf-core/genotyphi/parse/environment.yml +++ b/modules/nf-core/genotyphi/parse/environment.yml @@ -1,3 +1,4 @@ +name: genotyphi_parse channels: - conda-forge - bioconda diff --git a/modules/nf-core/genrich/environment.yml b/modules/nf-core/genrich/environment.yml index 3b3f3e29125..9e76305cbe6 100644 --- a/modules/nf-core/genrich/environment.yml +++ b/modules/nf-core/genrich/environment.yml @@ -1,3 +1,4 @@ +name: genrich channels: - conda-forge - bioconda diff --git a/modules/nf-core/geoquery/getgeo/environment.yml b/modules/nf-core/geoquery/getgeo/environment.yml index 93ebb27e6b4..bfbf8a2df29 100644 --- a/modules/nf-core/geoquery/getgeo/environment.yml +++ b/modules/nf-core/geoquery/getgeo/environment.yml @@ -1,3 +1,4 @@ +name: geoquery_getgeo channels: - conda-forge - bioconda diff --git a/modules/nf-core/gfaffix/environment.yml b/modules/nf-core/gfaffix/environment.yml index 39701c11e89..09e63d2483e 100644 --- a/modules/nf-core/gfaffix/environment.yml +++ b/modules/nf-core/gfaffix/environment.yml @@ -1,3 +1,4 @@ +name: gfaffix channels: - conda-forge - bioconda diff --git a/modules/nf-core/gfastats/environment.yml b/modules/nf-core/gfastats/environment.yml index b570be74e22..1c875ce0f89 100644 --- a/modules/nf-core/gfastats/environment.yml +++ b/modules/nf-core/gfastats/environment.yml @@ -1,3 +1,4 @@ +name: gfastats channels: - conda-forge - bioconda diff --git a/modules/nf-core/gfatools/gfa2fa/environment.yml b/modules/nf-core/gfatools/gfa2fa/environment.yml index 956411c144d..24da810536f 100644 --- a/modules/nf-core/gfatools/gfa2fa/environment.yml +++ b/modules/nf-core/gfatools/gfa2fa/environment.yml @@ -1,3 +1,4 @@ +name: gfatools_gfa2fa channels: - conda-forge - bioconda diff --git a/modules/nf-core/gfatools/stat/environment.yml b/modules/nf-core/gfatools/stat/environment.yml index 956411c144d..63dcb4d0e7f 100644 --- a/modules/nf-core/gfatools/stat/environment.yml +++ b/modules/nf-core/gfatools/stat/environment.yml @@ -1,3 +1,4 @@ +name: gfatools_stat channels: - conda-forge - bioconda diff --git a/modules/nf-core/gffcompare/environment.yml b/modules/nf-core/gffcompare/environment.yml index 6213dde8422..bcd633ea250 100644 --- a/modules/nf-core/gffcompare/environment.yml +++ b/modules/nf-core/gffcompare/environment.yml @@ -1,3 +1,4 @@ +name: gffcompare channels: - conda-forge - bioconda diff --git a/modules/nf-core/gffread/environment.yml b/modules/nf-core/gffread/environment.yml index d127cae3214..5398f71c5e5 100644 --- a/modules/nf-core/gffread/environment.yml +++ b/modules/nf-core/gffread/environment.yml @@ -1,3 +1,4 @@ +name: gffread channels: - conda-forge - bioconda diff --git a/modules/nf-core/gget/gget/environment.yml b/modules/nf-core/gget/gget/environment.yml index 9b71403a8d1..3205a531900 100644 --- a/modules/nf-core/gget/gget/environment.yml +++ b/modules/nf-core/gget/gget/environment.yml @@ -1,3 +1,4 @@ +name: gget_gget channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse/chunk/environment.yml b/modules/nf-core/glimpse/chunk/environment.yml index e073b3e7ba4..8d71aa915f4 100644 --- a/modules/nf-core/glimpse/chunk/environment.yml +++ b/modules/nf-core/glimpse/chunk/environment.yml @@ -1,3 +1,4 @@ +name: glimpse_chunk channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse/concordance/environment.yml b/modules/nf-core/glimpse/concordance/environment.yml index e073b3e7ba4..739ab78d7bd 100644 --- a/modules/nf-core/glimpse/concordance/environment.yml +++ b/modules/nf-core/glimpse/concordance/environment.yml @@ -1,3 +1,4 @@ +name: glimpse_concordance channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse/ligate/environment.yml b/modules/nf-core/glimpse/ligate/environment.yml index e073b3e7ba4..0f9e9a3327e 100644 --- a/modules/nf-core/glimpse/ligate/environment.yml +++ b/modules/nf-core/glimpse/ligate/environment.yml @@ -1,3 +1,4 @@ +name: glimpse_ligate channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse/phase/environment.yml b/modules/nf-core/glimpse/phase/environment.yml index e073b3e7ba4..fc79765abbd 100644 --- a/modules/nf-core/glimpse/phase/environment.yml +++ b/modules/nf-core/glimpse/phase/environment.yml @@ -1,3 +1,4 @@ +name: glimpse_phase channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse/sample/environment.yml b/modules/nf-core/glimpse/sample/environment.yml index e073b3e7ba4..d1fe7cad018 100644 --- a/modules/nf-core/glimpse/sample/environment.yml +++ b/modules/nf-core/glimpse/sample/environment.yml @@ -1,3 +1,4 @@ +name: glimpse_sample channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse2/chunk/environment.yml b/modules/nf-core/glimpse2/chunk/environment.yml index 7091fb07ac6..8b893af7e66 100644 --- a/modules/nf-core/glimpse2/chunk/environment.yml +++ b/modules/nf-core/glimpse2/chunk/environment.yml @@ -1,3 +1,4 @@ +name: glimpse2_chunk channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse2/concordance/environment.yml b/modules/nf-core/glimpse2/concordance/environment.yml index 7091fb07ac6..c3ad98fbf17 100644 --- a/modules/nf-core/glimpse2/concordance/environment.yml +++ b/modules/nf-core/glimpse2/concordance/environment.yml @@ -1,3 +1,4 @@ +name: glimpse2_concordance channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse2/ligate/environment.yml b/modules/nf-core/glimpse2/ligate/environment.yml index 7091fb07ac6..67e2c3e6126 100644 --- a/modules/nf-core/glimpse2/ligate/environment.yml +++ b/modules/nf-core/glimpse2/ligate/environment.yml @@ -1,3 +1,4 @@ +name: glimpse2_ligate channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse2/phase/environment.yml b/modules/nf-core/glimpse2/phase/environment.yml index 7091fb07ac6..b56a1ee64e8 100644 --- a/modules/nf-core/glimpse2/phase/environment.yml +++ b/modules/nf-core/glimpse2/phase/environment.yml @@ -1,3 +1,4 @@ +name: glimpse2_phase channels: - conda-forge - bioconda diff --git a/modules/nf-core/glimpse2/splitreference/environment.yml b/modules/nf-core/glimpse2/splitreference/environment.yml index 7091fb07ac6..a4dd839a2f7 100644 --- a/modules/nf-core/glimpse2/splitreference/environment.yml +++ b/modules/nf-core/glimpse2/splitreference/environment.yml @@ -1,3 +1,4 @@ +name: glimpse2_splitreference channels: - conda-forge - bioconda diff --git a/modules/nf-core/glnexus/environment.yml b/modules/nf-core/glnexus/environment.yml index fcd7d1652ed..922214e8c4a 100644 --- a/modules/nf-core/glnexus/environment.yml +++ b/modules/nf-core/glnexus/environment.yml @@ -1,3 +1,4 @@ +name: glnexus channels: - conda-forge - bioconda diff --git a/modules/nf-core/gnu/sort/environment.yml b/modules/nf-core/gnu/sort/environment.yml index fbe1251ccd5..45d2335684f 100644 --- a/modules/nf-core/gnu/sort/environment.yml +++ b/modules/nf-core/gnu/sort/environment.yml @@ -1,3 +1,4 @@ +name: GNU_SORT channels: - conda-forge - bioconda diff --git a/modules/nf-core/goat/taxonsearch/environment.yml b/modules/nf-core/goat/taxonsearch/environment.yml index b0b9fe46744..e56e71f1e44 100644 --- a/modules/nf-core/goat/taxonsearch/environment.yml +++ b/modules/nf-core/goat/taxonsearch/environment.yml @@ -1,3 +1,4 @@ +name: goat_taxonsearch channels: - conda-forge - bioconda diff --git a/modules/nf-core/goleft/indexcov/environment.yml b/modules/nf-core/goleft/indexcov/environment.yml index 66ed5d7e3e8..b5799272031 100644 --- a/modules/nf-core/goleft/indexcov/environment.yml +++ b/modules/nf-core/goleft/indexcov/environment.yml @@ -1,3 +1,4 @@ +name: goleft_indexcov channels: - conda-forge - bioconda diff --git a/modules/nf-core/goleft/indexsplit/environment.yml b/modules/nf-core/goleft/indexsplit/environment.yml index 66ed5d7e3e8..d8c37692adc 100644 --- a/modules/nf-core/goleft/indexsplit/environment.yml +++ b/modules/nf-core/goleft/indexsplit/environment.yml @@ -1,3 +1,4 @@ +name: goleft_indexsplit channels: - conda-forge - bioconda diff --git a/modules/nf-core/graphmap2/align/environment.yml b/modules/nf-core/graphmap2/align/environment.yml index e5d822f2b30..f6cd9ca5c89 100644 --- a/modules/nf-core/graphmap2/align/environment.yml +++ b/modules/nf-core/graphmap2/align/environment.yml @@ -1,3 +1,4 @@ +name: graphmap2_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/graphmap2/index/environment.yml b/modules/nf-core/graphmap2/index/environment.yml index e5d822f2b30..f2472bd92c1 100644 --- a/modules/nf-core/graphmap2/index/environment.yml +++ b/modules/nf-core/graphmap2/index/environment.yml @@ -1,3 +1,4 @@ +name: graphmap2_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/graphtyper/genotype/environment.yml b/modules/nf-core/graphtyper/genotype/environment.yml index 8c5b53bb463..b4d95c02618 100644 --- a/modules/nf-core/graphtyper/genotype/environment.yml +++ b/modules/nf-core/graphtyper/genotype/environment.yml @@ -1,3 +1,4 @@ +name: graphtyper_genotype channels: - conda-forge - bioconda diff --git a/modules/nf-core/graphtyper/vcfconcatenate/environment.yml b/modules/nf-core/graphtyper/vcfconcatenate/environment.yml index 8c5b53bb463..0bba162dfad 100644 --- a/modules/nf-core/graphtyper/vcfconcatenate/environment.yml +++ b/modules/nf-core/graphtyper/vcfconcatenate/environment.yml @@ -1,3 +1,4 @@ +name: graphtyper_vcfconcatenate channels: - conda-forge - bioconda diff --git a/modules/nf-core/gridss/gridss/environment.yml b/modules/nf-core/gridss/gridss/environment.yml index e011d0f2bef..88b38561095 100644 --- a/modules/nf-core/gridss/gridss/environment.yml +++ b/modules/nf-core/gridss/gridss/environment.yml @@ -1,3 +1,4 @@ +name: gridss_gridss channels: - conda-forge - bioconda diff --git a/modules/nf-core/gsea/gsea/environment.yml b/modules/nf-core/gsea/gsea/environment.yml index 3158f73617d..cb3c41e7ae7 100644 --- a/modules/nf-core/gsea/gsea/environment.yml +++ b/modules/nf-core/gsea/gsea/environment.yml @@ -1,3 +1,4 @@ +name: gsea_gsea channels: - conda-forge - bioconda diff --git a/modules/nf-core/gstama/collapse/environment.yml b/modules/nf-core/gstama/collapse/environment.yml index 5b3fde79291..644bc6cfe13 100644 --- a/modules/nf-core/gstama/collapse/environment.yml +++ b/modules/nf-core/gstama/collapse/environment.yml @@ -1,3 +1,4 @@ +name: GSTAMA_COLLAPSE channels: - conda-forge - bioconda diff --git a/modules/nf-core/gstama/merge/environment.yml b/modules/nf-core/gstama/merge/environment.yml index 5b3fde79291..44d574131a0 100644 --- a/modules/nf-core/gstama/merge/environment.yml +++ b/modules/nf-core/gstama/merge/environment.yml @@ -1,3 +1,4 @@ +name: gstama_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/gstama/polyacleanup/environment.yml b/modules/nf-core/gstama/polyacleanup/environment.yml index 5b3fde79291..7c143ffa4c2 100644 --- a/modules/nf-core/gstama/polyacleanup/environment.yml +++ b/modules/nf-core/gstama/polyacleanup/environment.yml @@ -1,3 +1,4 @@ +name: gstama_polyacleanup channels: - conda-forge - bioconda diff --git a/modules/nf-core/gtdbtk/classifywf/environment.yml b/modules/nf-core/gtdbtk/classifywf/environment.yml index cd6572c47a9..8801269ee33 100644 --- a/modules/nf-core/gtdbtk/classifywf/environment.yml +++ b/modules/nf-core/gtdbtk/classifywf/environment.yml @@ -1,3 +1,4 @@ +name: gtdbtk_classifywf channels: - conda-forge - bioconda diff --git a/modules/nf-core/gubbins/environment.yml b/modules/nf-core/gubbins/environment.yml index 0c4c3830c27..91537822360 100644 --- a/modules/nf-core/gubbins/environment.yml +++ b/modules/nf-core/gubbins/environment.yml @@ -1,3 +1,4 @@ +name: gubbins channels: - conda-forge - bioconda diff --git a/modules/nf-core/gunc/downloaddb/environment.yml b/modules/nf-core/gunc/downloaddb/environment.yml index 3d430680ec2..737b6261125 100644 --- a/modules/nf-core/gunc/downloaddb/environment.yml +++ b/modules/nf-core/gunc/downloaddb/environment.yml @@ -1,3 +1,4 @@ +name: gunc_downloaddb channels: - conda-forge - bioconda diff --git a/modules/nf-core/gunc/mergecheckm/environment.yml b/modules/nf-core/gunc/mergecheckm/environment.yml index 3d430680ec2..12513be8cae 100644 --- a/modules/nf-core/gunc/mergecheckm/environment.yml +++ b/modules/nf-core/gunc/mergecheckm/environment.yml @@ -1,3 +1,4 @@ +name: gunc_mergecheckm channels: - conda-forge - bioconda diff --git a/modules/nf-core/gunc/run/environment.yml b/modules/nf-core/gunc/run/environment.yml index 3d430680ec2..80bbec3001a 100644 --- a/modules/nf-core/gunc/run/environment.yml +++ b/modules/nf-core/gunc/run/environment.yml @@ -1,3 +1,4 @@ +name: gunc_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/gunzip/environment.yml b/modules/nf-core/gunzip/environment.yml index 222b301f389..25910b340a5 100644 --- a/modules/nf-core/gunzip/environment.yml +++ b/modules/nf-core/gunzip/environment.yml @@ -1,3 +1,4 @@ +name: gunzip channels: - conda-forge - bioconda diff --git a/modules/nf-core/gvcftools/extractvariants/environment.yml b/modules/nf-core/gvcftools/extractvariants/environment.yml index 1f9e9c7b0e4..b5c8b28d880 100644 --- a/modules/nf-core/gvcftools/extractvariants/environment.yml +++ b/modules/nf-core/gvcftools/extractvariants/environment.yml @@ -1,3 +1,4 @@ +name: gvcftools_extractvariants channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/abricate/environment.yml b/modules/nf-core/hamronization/abricate/environment.yml index 0a083ec342f..0d7c0e6628b 100644 --- a/modules/nf-core/hamronization/abricate/environment.yml +++ b/modules/nf-core/hamronization/abricate/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_abricate channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/amrfinderplus/environment.yml b/modules/nf-core/hamronization/amrfinderplus/environment.yml index 0a083ec342f..c462be8e0cb 100644 --- a/modules/nf-core/hamronization/amrfinderplus/environment.yml +++ b/modules/nf-core/hamronization/amrfinderplus/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_amrfinderplus channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/deeparg/environment.yml b/modules/nf-core/hamronization/deeparg/environment.yml index 0a083ec342f..86f99233d9f 100644 --- a/modules/nf-core/hamronization/deeparg/environment.yml +++ b/modules/nf-core/hamronization/deeparg/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_deeparg channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/fargene/environment.yml b/modules/nf-core/hamronization/fargene/environment.yml index 0a083ec342f..4f5a755795a 100644 --- a/modules/nf-core/hamronization/fargene/environment.yml +++ b/modules/nf-core/hamronization/fargene/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_fargene channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/rgi/environment.yml b/modules/nf-core/hamronization/rgi/environment.yml index 0a083ec342f..6fa71205140 100644 --- a/modules/nf-core/hamronization/rgi/environment.yml +++ b/modules/nf-core/hamronization/rgi/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_rgi channels: - conda-forge - bioconda diff --git a/modules/nf-core/hamronization/summarize/environment.yml b/modules/nf-core/hamronization/summarize/environment.yml index 0a083ec342f..0f8f05d320a 100644 --- a/modules/nf-core/hamronization/summarize/environment.yml +++ b/modules/nf-core/hamronization/summarize/environment.yml @@ -1,3 +1,4 @@ +name: hamronization_summarize channels: - conda-forge - bioconda diff --git a/modules/nf-core/hapibd/environment.yml b/modules/nf-core/hapibd/environment.yml index d4742029ca1..2902e831e19 100644 --- a/modules/nf-core/hapibd/environment.yml +++ b/modules/nf-core/hapibd/environment.yml @@ -1,3 +1,4 @@ +name: hapibd channels: - conda-forge - bioconda diff --git a/modules/nf-core/haplocheck/environment.yml b/modules/nf-core/haplocheck/environment.yml index aa271861695..8d06a67e5ce 100644 --- a/modules/nf-core/haplocheck/environment.yml +++ b/modules/nf-core/haplocheck/environment.yml @@ -1,3 +1,4 @@ +name: haplocheck channels: - conda-forge - bioconda diff --git a/modules/nf-core/haplogrep2/classify/environment.yml b/modules/nf-core/haplogrep2/classify/environment.yml index dcb6caf97fa..12949452f81 100644 --- a/modules/nf-core/haplogrep2/classify/environment.yml +++ b/modules/nf-core/haplogrep2/classify/environment.yml @@ -1,3 +1,4 @@ +name: haplogrep2_classify channels: - conda-forge - bioconda diff --git a/modules/nf-core/happy/happy/environment.yml b/modules/nf-core/happy/happy/environment.yml index 66e5bc84390..3d29dcb276d 100644 --- a/modules/nf-core/happy/happy/environment.yml +++ b/modules/nf-core/happy/happy/environment.yml @@ -1,3 +1,4 @@ +name: happy_happy channels: - conda-forge - bioconda diff --git a/modules/nf-core/happy/prepy/environment.yml b/modules/nf-core/happy/prepy/environment.yml index 66e5bc84390..d1598343f2f 100644 --- a/modules/nf-core/happy/prepy/environment.yml +++ b/modules/nf-core/happy/prepy/environment.yml @@ -1,3 +1,4 @@ +name: happy_prepy channels: - conda-forge - bioconda diff --git a/modules/nf-core/happy/sompy/environment.yml b/modules/nf-core/happy/sompy/environment.yml index 66e5bc84390..64ed7f55643 100644 --- a/modules/nf-core/happy/sompy/environment.yml +++ b/modules/nf-core/happy/sompy/environment.yml @@ -1,3 +1,4 @@ +name: happy_sompy channels: - conda-forge - bioconda diff --git a/modules/nf-core/hicap/environment.yml b/modules/nf-core/hicap/environment.yml index f7f74e6f9e8..a8c3e9de5ba 100644 --- a/modules/nf-core/hicap/environment.yml +++ b/modules/nf-core/hicap/environment.yml @@ -1,3 +1,4 @@ +name: hicap channels: - conda-forge - bioconda diff --git a/modules/nf-core/hicexplorer/hicpca/environment.yml b/modules/nf-core/hicexplorer/hicpca/environment.yml index 4e59f37a5c8..0838ab5da61 100644 --- a/modules/nf-core/hicexplorer/hicpca/environment.yml +++ b/modules/nf-core/hicexplorer/hicpca/environment.yml @@ -1,3 +1,4 @@ +name: hicexplorer_hicpca channels: - conda-forge - bioconda diff --git a/modules/nf-core/hifiasm/environment.yml b/modules/nf-core/hifiasm/environment.yml index a926f536bfe..5d0e9db62c1 100644 --- a/modules/nf-core/hifiasm/environment.yml +++ b/modules/nf-core/hifiasm/environment.yml @@ -1,3 +1,4 @@ +name: hifiasm channels: - conda-forge - bioconda diff --git a/modules/nf-core/hisat2/align/environment.yml b/modules/nf-core/hisat2/align/environment.yml index da4e236d92f..0c1415f94e6 100644 --- a/modules/nf-core/hisat2/align/environment.yml +++ b/modules/nf-core/hisat2/align/environment.yml @@ -1,3 +1,4 @@ +name: hisat2_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/hisat2/build/environment.yml b/modules/nf-core/hisat2/build/environment.yml index e25731aa624..2e67cd3eaaf 100644 --- a/modules/nf-core/hisat2/build/environment.yml +++ b/modules/nf-core/hisat2/build/environment.yml @@ -1,3 +1,4 @@ +name: hisat2_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/hisat2/extractsplicesites/environment.yml b/modules/nf-core/hisat2/extractsplicesites/environment.yml index e25731aa624..4b03e5e4666 100644 --- a/modules/nf-core/hisat2/extractsplicesites/environment.yml +++ b/modules/nf-core/hisat2/extractsplicesites/environment.yml @@ -1,3 +1,4 @@ +name: hisat2_extractsplicesites channels: - conda-forge - bioconda diff --git a/modules/nf-core/hlala/preparegraph/environment.yml b/modules/nf-core/hlala/preparegraph/environment.yml index bcd3a8b1c63..eddce47af2f 100644 --- a/modules/nf-core/hlala/preparegraph/environment.yml +++ b/modules/nf-core/hlala/preparegraph/environment.yml @@ -1,3 +1,4 @@ +name: hlala_preparegraph channels: - conda-forge - bioconda diff --git a/modules/nf-core/hlala/typing/environment.yml b/modules/nf-core/hlala/typing/environment.yml index 813051e780e..330ab0a26c9 100644 --- a/modules/nf-core/hlala/typing/environment.yml +++ b/modules/nf-core/hlala/typing/environment.yml @@ -1,3 +1,4 @@ +name: hlala_typing channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmcopy/gccounter/environment.yml b/modules/nf-core/hmmcopy/gccounter/environment.yml index 9e10d0962d2..ee209530e1a 100644 --- a/modules/nf-core/hmmcopy/gccounter/environment.yml +++ b/modules/nf-core/hmmcopy/gccounter/environment.yml @@ -1,3 +1,4 @@ +name: hmmcopy_gccounter channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmcopy/generatemap/environment.yml b/modules/nf-core/hmmcopy/generatemap/environment.yml index 9e10d0962d2..0c647804495 100644 --- a/modules/nf-core/hmmcopy/generatemap/environment.yml +++ b/modules/nf-core/hmmcopy/generatemap/environment.yml @@ -1,3 +1,4 @@ +name: hmmcopy_generatemap channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmcopy/mapcounter/environment.yml b/modules/nf-core/hmmcopy/mapcounter/environment.yml index 9e10d0962d2..4bdfe0fbad6 100644 --- a/modules/nf-core/hmmcopy/mapcounter/environment.yml +++ b/modules/nf-core/hmmcopy/mapcounter/environment.yml @@ -1,3 +1,4 @@ +name: hmmcopy_mapcounter channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmcopy/readcounter/environment.yml b/modules/nf-core/hmmcopy/readcounter/environment.yml index 9e10d0962d2..cfbdf8ac853 100644 --- a/modules/nf-core/hmmcopy/readcounter/environment.yml +++ b/modules/nf-core/hmmcopy/readcounter/environment.yml @@ -1,3 +1,4 @@ +name: hmmcopy_readcounter channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/eslalimask/environment.yml b/modules/nf-core/hmmer/eslalimask/environment.yml index e4787ce5fb8..ed14ff8637c 100644 --- a/modules/nf-core/hmmer/eslalimask/environment.yml +++ b/modules/nf-core/hmmer/eslalimask/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_eslalimask channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/eslreformat/environment.yml b/modules/nf-core/hmmer/eslreformat/environment.yml index e4787ce5fb8..a847b7d3194 100644 --- a/modules/nf-core/hmmer/eslreformat/environment.yml +++ b/modules/nf-core/hmmer/eslreformat/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_eslreformat channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/hmmalign/environment.yml b/modules/nf-core/hmmer/hmmalign/environment.yml index e4787ce5fb8..9fa6bdafc0d 100644 --- a/modules/nf-core/hmmer/hmmalign/environment.yml +++ b/modules/nf-core/hmmer/hmmalign/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_hmmalign channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/hmmbuild/environment.yml b/modules/nf-core/hmmer/hmmbuild/environment.yml index e4787ce5fb8..1957ad5c63a 100644 --- a/modules/nf-core/hmmer/hmmbuild/environment.yml +++ b/modules/nf-core/hmmer/hmmbuild/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_hmmbuild channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/hmmfetch/environment.yml b/modules/nf-core/hmmer/hmmfetch/environment.yml index e4787ce5fb8..05544c29d99 100644 --- a/modules/nf-core/hmmer/hmmfetch/environment.yml +++ b/modules/nf-core/hmmer/hmmfetch/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_hmmfetch channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmmer/hmmsearch/environment.yml b/modules/nf-core/hmmer/hmmsearch/environment.yml index e4787ce5fb8..89978984ff4 100644 --- a/modules/nf-core/hmmer/hmmsearch/environment.yml +++ b/modules/nf-core/hmmer/hmmsearch/environment.yml @@ -1,3 +1,4 @@ +name: hmmer_hmmsearch channels: - conda-forge - bioconda diff --git a/modules/nf-core/hmtnote/annotate/environment.yml b/modules/nf-core/hmtnote/annotate/environment.yml index c78b99daba8..46bd87aa052 100644 --- a/modules/nf-core/hmtnote/annotate/environment.yml +++ b/modules/nf-core/hmtnote/annotate/environment.yml @@ -1,3 +1,4 @@ +name: hmtnote_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/homer/annotatepeaks/environment.yml b/modules/nf-core/homer/annotatepeaks/environment.yml index 657c87323a9..aef00e188a9 100644 --- a/modules/nf-core/homer/annotatepeaks/environment.yml +++ b/modules/nf-core/homer/annotatepeaks/environment.yml @@ -1,3 +1,4 @@ +name: homer_annotatepeaks channels: - conda-forge - bioconda diff --git a/modules/nf-core/homer/findpeaks/environment.yml b/modules/nf-core/homer/findpeaks/environment.yml index 0283468c827..a5766cfb740 100644 --- a/modules/nf-core/homer/findpeaks/environment.yml +++ b/modules/nf-core/homer/findpeaks/environment.yml @@ -1,3 +1,4 @@ +name: homer_findpeaks channels: - conda-forge - bioconda diff --git a/modules/nf-core/homer/maketagdirectory/environment.yml b/modules/nf-core/homer/maketagdirectory/environment.yml index 33de0bb09e5..6a32f8e632d 100644 --- a/modules/nf-core/homer/maketagdirectory/environment.yml +++ b/modules/nf-core/homer/maketagdirectory/environment.yml @@ -1,3 +1,4 @@ +name: homer_maketagdirectory channels: - conda-forge - bioconda diff --git a/modules/nf-core/homer/makeucscfile/environment.yml b/modules/nf-core/homer/makeucscfile/environment.yml index 0283468c827..79963b3491c 100644 --- a/modules/nf-core/homer/makeucscfile/environment.yml +++ b/modules/nf-core/homer/makeucscfile/environment.yml @@ -1,3 +1,4 @@ +name: homer_makeucscfile channels: - conda-forge - bioconda diff --git a/modules/nf-core/homer/pos2bed/environment.yml b/modules/nf-core/homer/pos2bed/environment.yml index 657c87323a9..94ed9904883 100644 --- a/modules/nf-core/homer/pos2bed/environment.yml +++ b/modules/nf-core/homer/pos2bed/environment.yml @@ -1,3 +1,4 @@ +name: homer_pos2bed channels: - conda-forge - bioconda diff --git a/modules/nf-core/hpsuissero/environment.yml b/modules/nf-core/hpsuissero/environment.yml index fe6d5827281..3abdae453d3 100644 --- a/modules/nf-core/hpsuissero/environment.yml +++ b/modules/nf-core/hpsuissero/environment.yml @@ -1,3 +1,4 @@ +name: hpsuissero channels: - conda-forge - bioconda diff --git a/modules/nf-core/htseq/count/environment.yml b/modules/nf-core/htseq/count/environment.yml index 51ed51486d7..4c11f606f2a 100644 --- a/modules/nf-core/htseq/count/environment.yml +++ b/modules/nf-core/htseq/count/environment.yml @@ -1,3 +1,4 @@ +name: htseq_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/hypo/environment.yml b/modules/nf-core/hypo/environment.yml index 405dcbc7020..dd2c6e25118 100644 --- a/modules/nf-core/hypo/environment.yml +++ b/modules/nf-core/hypo/environment.yml @@ -1,3 +1,4 @@ +name: hypo channels: - conda-forge - bioconda diff --git a/modules/nf-core/ichorcna/createpon/environment.yml b/modules/nf-core/ichorcna/createpon/environment.yml index f67969d75eb..ea511a17441 100644 --- a/modules/nf-core/ichorcna/createpon/environment.yml +++ b/modules/nf-core/ichorcna/createpon/environment.yml @@ -1,3 +1,4 @@ +name: ichorcna_createpon channels: - conda-forge - bioconda diff --git a/modules/nf-core/ichorcna/run/environment.yml b/modules/nf-core/ichorcna/run/environment.yml index f67969d75eb..671b6d5514e 100644 --- a/modules/nf-core/ichorcna/run/environment.yml +++ b/modules/nf-core/ichorcna/run/environment.yml @@ -1,3 +1,4 @@ +name: ichorcna_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/icountmini/metagene/environment.yml b/modules/nf-core/icountmini/metagene/environment.yml index 1a5ba6455fc..f2edecc4f0f 100644 --- a/modules/nf-core/icountmini/metagene/environment.yml +++ b/modules/nf-core/icountmini/metagene/environment.yml @@ -1,3 +1,4 @@ +name: icountmini_metagene channels: - conda-forge - bioconda diff --git a/modules/nf-core/icountmini/peaks/environment.yml b/modules/nf-core/icountmini/peaks/environment.yml index 780b8043e60..11a5125dcc9 100644 --- a/modules/nf-core/icountmini/peaks/environment.yml +++ b/modules/nf-core/icountmini/peaks/environment.yml @@ -1,3 +1,4 @@ +name: icountmini_peaks channels: - conda-forge - bioconda diff --git a/modules/nf-core/icountmini/segment/environment.yml b/modules/nf-core/icountmini/segment/environment.yml index 780b8043e60..ec862204988 100644 --- a/modules/nf-core/icountmini/segment/environment.yml +++ b/modules/nf-core/icountmini/segment/environment.yml @@ -1,3 +1,4 @@ +name: icountmini_segment channels: - conda-forge - bioconda diff --git a/modules/nf-core/icountmini/sigxls/environment.yml b/modules/nf-core/icountmini/sigxls/environment.yml index 780b8043e60..083f6cd3bcc 100644 --- a/modules/nf-core/icountmini/sigxls/environment.yml +++ b/modules/nf-core/icountmini/sigxls/environment.yml @@ -1,3 +1,4 @@ +name: icountmini_sigxls channels: - conda-forge - bioconda diff --git a/modules/nf-core/icountmini/summary/environment.yml b/modules/nf-core/icountmini/summary/environment.yml index 780b8043e60..253eaf5179c 100644 --- a/modules/nf-core/icountmini/summary/environment.yml +++ b/modules/nf-core/icountmini/summary/environment.yml @@ -1,3 +1,4 @@ +name: icountmini_summary channels: - conda-forge - bioconda diff --git a/modules/nf-core/idr/environment.yml b/modules/nf-core/idr/environment.yml index 3c284eff937..51378273997 100644 --- a/modules/nf-core/idr/environment.yml +++ b/modules/nf-core/idr/environment.yml @@ -1,3 +1,4 @@ +name: idr channels: - conda-forge - bioconda diff --git a/modules/nf-core/igv/js/environment.yml b/modules/nf-core/igv/js/environment.yml index 222b301f389..7604b3c1012 100644 --- a/modules/nf-core/igv/js/environment.yml +++ b/modules/nf-core/igv/js/environment.yml @@ -1,3 +1,4 @@ +name: igv_js channels: - conda-forge - bioconda diff --git a/modules/nf-core/ilastik/multicut/environment.yml b/modules/nf-core/ilastik/multicut/environment.yml index bcd3a8b1c63..ecd6fa335bb 100644 --- a/modules/nf-core/ilastik/multicut/environment.yml +++ b/modules/nf-core/ilastik/multicut/environment.yml @@ -1,3 +1,4 @@ +name: ilastik_multicut channels: - conda-forge - bioconda diff --git a/modules/nf-core/ilastik/pixelclassification/environment.yml b/modules/nf-core/ilastik/pixelclassification/environment.yml index bcd3a8b1c63..a8dafc2c0b2 100644 --- a/modules/nf-core/ilastik/pixelclassification/environment.yml +++ b/modules/nf-core/ilastik/pixelclassification/environment.yml @@ -1,3 +1,4 @@ +name: ilastik_pixelclassification channels: - conda-forge - bioconda diff --git a/modules/nf-core/instrain/compare/environment.yml b/modules/nf-core/instrain/compare/environment.yml index 00c65ec3359..d0a2ae952e8 100644 --- a/modules/nf-core/instrain/compare/environment.yml +++ b/modules/nf-core/instrain/compare/environment.yml @@ -1,3 +1,4 @@ +name: instrain_compare channels: - conda-forge - bioconda diff --git a/modules/nf-core/instrain/profile/environment.yml b/modules/nf-core/instrain/profile/environment.yml index 00c65ec3359..2b9ea6d670a 100644 --- a/modules/nf-core/instrain/profile/environment.yml +++ b/modules/nf-core/instrain/profile/environment.yml @@ -1,3 +1,4 @@ +name: instrain_profile channels: - conda-forge - bioconda diff --git a/modules/nf-core/interproscan/environment.yml b/modules/nf-core/interproscan/environment.yml index ef1ddee2fdc..36ec6fafd8c 100644 --- a/modules/nf-core/interproscan/environment.yml +++ b/modules/nf-core/interproscan/environment.yml @@ -1,3 +1,4 @@ +name: interproscan channels: - conda-forge - bioconda diff --git a/modules/nf-core/iphop/download/environment.yml b/modules/nf-core/iphop/download/environment.yml index f9db5acdf55..7b90c7ba16d 100644 --- a/modules/nf-core/iphop/download/environment.yml +++ b/modules/nf-core/iphop/download/environment.yml @@ -1,3 +1,4 @@ +name: iphop_download channels: - conda-forge - bioconda diff --git a/modules/nf-core/iphop/predict/environment.yml b/modules/nf-core/iphop/predict/environment.yml index f9db5acdf55..5dda3a70a99 100644 --- a/modules/nf-core/iphop/predict/environment.yml +++ b/modules/nf-core/iphop/predict/environment.yml @@ -1,3 +1,4 @@ +name: iphop_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/iqtree/environment.yml b/modules/nf-core/iqtree/environment.yml index 9c1dce63e58..0dadfd6d5f0 100644 --- a/modules/nf-core/iqtree/environment.yml +++ b/modules/nf-core/iqtree/environment.yml @@ -1,3 +1,4 @@ +name: iqtree channels: - conda-forge - bioconda diff --git a/modules/nf-core/islandpath/environment.yml b/modules/nf-core/islandpath/environment.yml index bb796f4178d..13982a73fec 100644 --- a/modules/nf-core/islandpath/environment.yml +++ b/modules/nf-core/islandpath/environment.yml @@ -1,3 +1,4 @@ +name: islandpath channels: - conda-forge - bioconda diff --git a/modules/nf-core/ismapper/environment.yml b/modules/nf-core/ismapper/environment.yml index 50b35851323..0a178373f8f 100644 --- a/modules/nf-core/ismapper/environment.yml +++ b/modules/nf-core/ismapper/environment.yml @@ -1,3 +1,4 @@ +name: ismapper channels: - conda-forge - bioconda diff --git a/modules/nf-core/isoseq3/cluster/environment.yml b/modules/nf-core/isoseq3/cluster/environment.yml index 72217e37817..957e456c0b6 100644 --- a/modules/nf-core/isoseq3/cluster/environment.yml +++ b/modules/nf-core/isoseq3/cluster/environment.yml @@ -1,3 +1,4 @@ +name: isoseq3_cluster channels: - conda-forge - bioconda diff --git a/modules/nf-core/isoseq3/refine/environment.yml b/modules/nf-core/isoseq3/refine/environment.yml index 342b7ce69ad..5061bac0f28 100644 --- a/modules/nf-core/isoseq3/refine/environment.yml +++ b/modules/nf-core/isoseq3/refine/environment.yml @@ -1,3 +1,4 @@ +name: isoseq3_refine channels: - conda-forge - bioconda diff --git a/modules/nf-core/ivar/consensus/environment.yml b/modules/nf-core/ivar/consensus/environment.yml index cae0c4213ac..c7b87d02480 100644 --- a/modules/nf-core/ivar/consensus/environment.yml +++ b/modules/nf-core/ivar/consensus/environment.yml @@ -1,3 +1,4 @@ +name: ivar_consensus channels: - conda-forge - bioconda diff --git a/modules/nf-core/ivar/trim/environment.yml b/modules/nf-core/ivar/trim/environment.yml index cae0c4213ac..7fb8b3a2910 100644 --- a/modules/nf-core/ivar/trim/environment.yml +++ b/modules/nf-core/ivar/trim/environment.yml @@ -1,3 +1,4 @@ +name: ivar_trim channels: - conda-forge - bioconda diff --git a/modules/nf-core/ivar/variants/environment.yml b/modules/nf-core/ivar/variants/environment.yml index cae0c4213ac..7431cac4ff1 100644 --- a/modules/nf-core/ivar/variants/environment.yml +++ b/modules/nf-core/ivar/variants/environment.yml @@ -1,3 +1,4 @@ +name: ivar_variants channels: - conda-forge - bioconda diff --git a/modules/nf-core/jasminesv/environment.yml b/modules/nf-core/jasminesv/environment.yml index e6fd597461e..3f04bc0f81f 100644 --- a/modules/nf-core/jasminesv/environment.yml +++ b/modules/nf-core/jasminesv/environment.yml @@ -1,3 +1,4 @@ +name: jasminesv channels: - conda-forge - bioconda diff --git a/modules/nf-core/jupyternotebook/environment.yml b/modules/nf-core/jupyternotebook/environment.yml index 85a174b652d..98fc481a700 100644 --- a/modules/nf-core/jupyternotebook/environment.yml +++ b/modules/nf-core/jupyternotebook/environment.yml @@ -1,3 +1,4 @@ +name: jupyternotebook channels: - conda-forge - bioconda diff --git a/modules/nf-core/kaiju/kaiju/environment.yml b/modules/nf-core/kaiju/kaiju/environment.yml index 28e63389224..dd491adb36b 100644 --- a/modules/nf-core/kaiju/kaiju/environment.yml +++ b/modules/nf-core/kaiju/kaiju/environment.yml @@ -1,3 +1,4 @@ +name: kaiju_kaiju channels: - conda-forge - bioconda diff --git a/modules/nf-core/kaiju/kaiju2krona/environment.yml b/modules/nf-core/kaiju/kaiju2krona/environment.yml index 28e63389224..f3d27c307b0 100644 --- a/modules/nf-core/kaiju/kaiju2krona/environment.yml +++ b/modules/nf-core/kaiju/kaiju2krona/environment.yml @@ -1,3 +1,4 @@ +name: kaiju_kaiju2krona channels: - conda-forge - bioconda diff --git a/modules/nf-core/kaiju/kaiju2table/environment.yml b/modules/nf-core/kaiju/kaiju2table/environment.yml index 28e63389224..81a6ca0bc0d 100644 --- a/modules/nf-core/kaiju/kaiju2table/environment.yml +++ b/modules/nf-core/kaiju/kaiju2table/environment.yml @@ -1,3 +1,4 @@ +name: kaiju_kaiju2table channels: - conda-forge - bioconda diff --git a/modules/nf-core/kalign/align/environment.yml b/modules/nf-core/kalign/align/environment.yml index edb4b40b3a5..88aff8afcdd 100644 --- a/modules/nf-core/kalign/align/environment.yml +++ b/modules/nf-core/kalign/align/environment.yml @@ -1,3 +1,4 @@ +name: kalign_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/kallisto/index/environment.yml b/modules/nf-core/kallisto/index/environment.yml index d62586580e1..471b006a898 100644 --- a/modules/nf-core/kallisto/index/environment.yml +++ b/modules/nf-core/kallisto/index/environment.yml @@ -1,3 +1,4 @@ +name: kallisto_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/kallisto/quant/environment.yml b/modules/nf-core/kallisto/quant/environment.yml index d62586580e1..c2d6306bb2c 100644 --- a/modules/nf-core/kallisto/quant/environment.yml +++ b/modules/nf-core/kallisto/quant/environment.yml @@ -1,3 +1,4 @@ +name: kallisto_quant channels: - conda-forge - bioconda diff --git a/modules/nf-core/kallistobustools/count/environment.yml b/modules/nf-core/kallistobustools/count/environment.yml index 0ea285bb821..7ff8a2daa05 100644 --- a/modules/nf-core/kallistobustools/count/environment.yml +++ b/modules/nf-core/kallistobustools/count/environment.yml @@ -1,3 +1,4 @@ +name: kallistobustools_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/kallistobustools/ref/environment.yml b/modules/nf-core/kallistobustools/ref/environment.yml index 3bafb66c5ff..acbd0e0ad52 100644 --- a/modules/nf-core/kallistobustools/ref/environment.yml +++ b/modules/nf-core/kallistobustools/ref/environment.yml @@ -1,3 +1,4 @@ +name: kallistobustools_ref channels: - conda-forge - bioconda diff --git a/modules/nf-core/kat/hist/environment.yml b/modules/nf-core/kat/hist/environment.yml index 8f75246cde8..430a40fbee9 100644 --- a/modules/nf-core/kat/hist/environment.yml +++ b/modules/nf-core/kat/hist/environment.yml @@ -1,3 +1,4 @@ +name: kat_hist channels: - conda-forge - bioconda diff --git a/modules/nf-core/khmer/normalizebymedian/environment.yml b/modules/nf-core/khmer/normalizebymedian/environment.yml index 93acd97f34c..1ffa182980f 100644 --- a/modules/nf-core/khmer/normalizebymedian/environment.yml +++ b/modules/nf-core/khmer/normalizebymedian/environment.yml @@ -1,3 +1,4 @@ +name: khmer_normalizebymedian channels: - conda-forge - bioconda diff --git a/modules/nf-core/khmer/uniquekmers/environment.yml b/modules/nf-core/khmer/uniquekmers/environment.yml index 93acd97f34c..9b7b75460b1 100644 --- a/modules/nf-core/khmer/uniquekmers/environment.yml +++ b/modules/nf-core/khmer/uniquekmers/environment.yml @@ -1,3 +1,4 @@ +name: khmer_uniquekmers channels: - conda-forge - bioconda diff --git a/modules/nf-core/kleborate/environment.yml b/modules/nf-core/kleborate/environment.yml index 31d32489d16..63ee9f40b47 100644 --- a/modules/nf-core/kleborate/environment.yml +++ b/modules/nf-core/kleborate/environment.yml @@ -1,3 +1,4 @@ +name: kleborate channels: - conda-forge - bioconda diff --git a/modules/nf-core/kmcp/compute/environment.yml b/modules/nf-core/kmcp/compute/environment.yml index 5df6ee353e0..3c773d5301b 100644 --- a/modules/nf-core/kmcp/compute/environment.yml +++ b/modules/nf-core/kmcp/compute/environment.yml @@ -1,3 +1,4 @@ +name: kmcp_compute channels: - conda-forge - bioconda diff --git a/modules/nf-core/kmcp/index/environment.yml b/modules/nf-core/kmcp/index/environment.yml index 5df6ee353e0..858c7a20a7f 100644 --- a/modules/nf-core/kmcp/index/environment.yml +++ b/modules/nf-core/kmcp/index/environment.yml @@ -1,3 +1,4 @@ +name: kmcp_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/kmcp/merge/environment.yml b/modules/nf-core/kmcp/merge/environment.yml index 5df6ee353e0..5436b8bbb7f 100644 --- a/modules/nf-core/kmcp/merge/environment.yml +++ b/modules/nf-core/kmcp/merge/environment.yml @@ -1,3 +1,4 @@ +name: kmcp_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/kmcp/profile/environment.yml b/modules/nf-core/kmcp/profile/environment.yml index 5df6ee353e0..54d9852f919 100644 --- a/modules/nf-core/kmcp/profile/environment.yml +++ b/modules/nf-core/kmcp/profile/environment.yml @@ -1,3 +1,4 @@ +name: kmcp_profile channels: - conda-forge - bioconda diff --git a/modules/nf-core/kmcp/search/environment.yml b/modules/nf-core/kmcp/search/environment.yml index 5df6ee353e0..147ecf5215d 100644 --- a/modules/nf-core/kmcp/search/environment.yml +++ b/modules/nf-core/kmcp/search/environment.yml @@ -1,3 +1,4 @@ +name: kmcp_search channels: - conda-forge - bioconda diff --git a/modules/nf-core/kofamscan/environment.yml b/modules/nf-core/kofamscan/environment.yml index 6e2809928cc..12a6b4bfb79 100644 --- a/modules/nf-core/kofamscan/environment.yml +++ b/modules/nf-core/kofamscan/environment.yml @@ -1,3 +1,4 @@ +name: kofamscan channels: - conda-forge - bioconda diff --git a/modules/nf-core/kraken2/kraken2/environment.yml b/modules/nf-core/kraken2/kraken2/environment.yml index 480d40f3de5..63be419bd43 100644 --- a/modules/nf-core/kraken2/kraken2/environment.yml +++ b/modules/nf-core/kraken2/kraken2/environment.yml @@ -1,3 +1,4 @@ +name: kraken2_kraken2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/krakentools/combinekreports/environment.yml b/modules/nf-core/krakentools/combinekreports/environment.yml index 98a8c113f1e..770cdde08ee 100644 --- a/modules/nf-core/krakentools/combinekreports/environment.yml +++ b/modules/nf-core/krakentools/combinekreports/environment.yml @@ -1,3 +1,4 @@ +name: krakentools_combinekreports channels: - conda-forge - bioconda diff --git a/modules/nf-core/krakentools/kreport2krona/environment.yml b/modules/nf-core/krakentools/kreport2krona/environment.yml index 98a8c113f1e..ea49a77ccbc 100644 --- a/modules/nf-core/krakentools/kreport2krona/environment.yml +++ b/modules/nf-core/krakentools/kreport2krona/environment.yml @@ -1,3 +1,4 @@ +name: krakentools_kreport2krona channels: - conda-forge - bioconda diff --git a/modules/nf-core/krakenuniq/build/environment.yml b/modules/nf-core/krakenuniq/build/environment.yml index b5d4b24dbf6..d99b5ef9422 100644 --- a/modules/nf-core/krakenuniq/build/environment.yml +++ b/modules/nf-core/krakenuniq/build/environment.yml @@ -1,3 +1,4 @@ +name: krakenuniq_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/krakenuniq/download/environment.yml b/modules/nf-core/krakenuniq/download/environment.yml index b5d4b24dbf6..4160fbec0fd 100644 --- a/modules/nf-core/krakenuniq/download/environment.yml +++ b/modules/nf-core/krakenuniq/download/environment.yml @@ -1,3 +1,4 @@ +name: krakenuniq_download channels: - conda-forge - bioconda diff --git a/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml b/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml index b5d4b24dbf6..11bbb879fc2 100644 --- a/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml +++ b/modules/nf-core/krakenuniq/preloadedkrakenuniq/environment.yml @@ -1,3 +1,4 @@ +name: krakenuniq_preloadedkrakenuniq channels: - conda-forge - bioconda diff --git a/modules/nf-core/krona/kronadb/environment.yml b/modules/nf-core/krona/kronadb/environment.yml index fe85227e8e6..1646628f01c 100644 --- a/modules/nf-core/krona/kronadb/environment.yml +++ b/modules/nf-core/krona/kronadb/environment.yml @@ -1,3 +1,4 @@ +name: krona_kronadb channels: - conda-forge - bioconda diff --git a/modules/nf-core/krona/ktimporttaxonomy/environment.yml b/modules/nf-core/krona/ktimporttaxonomy/environment.yml index 84f6cc53eb3..1909e15f311 100644 --- a/modules/nf-core/krona/ktimporttaxonomy/environment.yml +++ b/modules/nf-core/krona/ktimporttaxonomy/environment.yml @@ -1,3 +1,4 @@ +name: krona_ktimporttaxonomy channels: - conda-forge - bioconda diff --git a/modules/nf-core/krona/ktimporttext/environment.yml b/modules/nf-core/krona/ktimporttext/environment.yml index 5d9f7db3f8c..d36bd65a35a 100644 --- a/modules/nf-core/krona/ktimporttext/environment.yml +++ b/modules/nf-core/krona/ktimporttext/environment.yml @@ -1,3 +1,4 @@ +name: krona_ktimporttext channels: - conda-forge - bioconda diff --git a/modules/nf-core/krona/ktupdatetaxonomy/environment.yml b/modules/nf-core/krona/ktupdatetaxonomy/environment.yml index fe85227e8e6..a2a912962b2 100644 --- a/modules/nf-core/krona/ktupdatetaxonomy/environment.yml +++ b/modules/nf-core/krona/ktupdatetaxonomy/environment.yml @@ -1,3 +1,4 @@ +name: krona_ktupdatetaxonomy channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/dotplot/environment.yml b/modules/nf-core/last/dotplot/environment.yml index 19cb9a89fe3..59dcb57f27a 100644 --- a/modules/nf-core/last/dotplot/environment.yml +++ b/modules/nf-core/last/dotplot/environment.yml @@ -1,3 +1,4 @@ +name: last_dotplot channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/lastal/environment.yml b/modules/nf-core/last/lastal/environment.yml index 147cafd8bae..e9e41e64603 100644 --- a/modules/nf-core/last/lastal/environment.yml +++ b/modules/nf-core/last/lastal/environment.yml @@ -1,3 +1,4 @@ +name: last_lastal channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/lastdb/environment.yml b/modules/nf-core/last/lastdb/environment.yml index 19cb9a89fe3..08d5545c398 100644 --- a/modules/nf-core/last/lastdb/environment.yml +++ b/modules/nf-core/last/lastdb/environment.yml @@ -1,3 +1,4 @@ +name: last_lastdb channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/mafconvert/environment.yml b/modules/nf-core/last/mafconvert/environment.yml index 19cb9a89fe3..d521bd9893a 100644 --- a/modules/nf-core/last/mafconvert/environment.yml +++ b/modules/nf-core/last/mafconvert/environment.yml @@ -1,3 +1,4 @@ +name: last_mafconvert channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/mafswap/environment.yml b/modules/nf-core/last/mafswap/environment.yml index 19cb9a89fe3..22268aea85a 100644 --- a/modules/nf-core/last/mafswap/environment.yml +++ b/modules/nf-core/last/mafswap/environment.yml @@ -1,3 +1,4 @@ +name: last_mafswap channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/postmask/environment.yml b/modules/nf-core/last/postmask/environment.yml index 19cb9a89fe3..f467f4276f9 100644 --- a/modules/nf-core/last/postmask/environment.yml +++ b/modules/nf-core/last/postmask/environment.yml @@ -1,3 +1,4 @@ +name: last_postmask channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/split/environment.yml b/modules/nf-core/last/split/environment.yml index 19cb9a89fe3..5c641fd0f94 100644 --- a/modules/nf-core/last/split/environment.yml +++ b/modules/nf-core/last/split/environment.yml @@ -1,3 +1,4 @@ +name: last_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/last/train/environment.yml b/modules/nf-core/last/train/environment.yml index 19cb9a89fe3..f4de91f01fa 100644 --- a/modules/nf-core/last/train/environment.yml +++ b/modules/nf-core/last/train/environment.yml @@ -1,3 +1,4 @@ +name: last_train channels: - conda-forge - bioconda diff --git a/modules/nf-core/learnmsa/align/environment.yml b/modules/nf-core/learnmsa/align/environment.yml index 5f45c8e8858..04daae62b86 100644 --- a/modules/nf-core/learnmsa/align/environment.yml +++ b/modules/nf-core/learnmsa/align/environment.yml @@ -1,3 +1,4 @@ +name: learnmsa_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/leehom/environment.yml b/modules/nf-core/leehom/environment.yml index 0ae32461d37..85e856fac6f 100644 --- a/modules/nf-core/leehom/environment.yml +++ b/modules/nf-core/leehom/environment.yml @@ -1,3 +1,4 @@ +name: leehom channels: - conda-forge - bioconda diff --git a/modules/nf-core/legsta/environment.yml b/modules/nf-core/legsta/environment.yml index 35176a5c348..34d11fcfbe3 100644 --- a/modules/nf-core/legsta/environment.yml +++ b/modules/nf-core/legsta/environment.yml @@ -1,3 +1,4 @@ +name: legsta channels: - conda-forge - bioconda diff --git a/modules/nf-core/lima/environment.yml b/modules/nf-core/lima/environment.yml index a53dd426de5..0e1d7e9634a 100644 --- a/modules/nf-core/lima/environment.yml +++ b/modules/nf-core/lima/environment.yml @@ -1,3 +1,4 @@ +name: lima channels: - conda-forge - bioconda diff --git a/modules/nf-core/limma/differential/environment.yml b/modules/nf-core/limma/differential/environment.yml index 903fdd04797..20188f1254f 100644 --- a/modules/nf-core/limma/differential/environment.yml +++ b/modules/nf-core/limma/differential/environment.yml @@ -1,3 +1,4 @@ +name: limma_differential channels: - conda-forge - bioconda diff --git a/modules/nf-core/lissero/environment.yml b/modules/nf-core/lissero/environment.yml index f2703e085e9..46858553607 100644 --- a/modules/nf-core/lissero/environment.yml +++ b/modules/nf-core/lissero/environment.yml @@ -1,3 +1,4 @@ +name: lissero channels: - conda-forge - bioconda diff --git a/modules/nf-core/lofreq/call/environment.yml b/modules/nf-core/lofreq/call/environment.yml index 5334b7ba8eb..fbba018d7ba 100644 --- a/modules/nf-core/lofreq/call/environment.yml +++ b/modules/nf-core/lofreq/call/environment.yml @@ -1,3 +1,4 @@ +name: lofreq_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/lofreq/callparallel/environment.yml b/modules/nf-core/lofreq/callparallel/environment.yml index 5334b7ba8eb..222d145021f 100644 --- a/modules/nf-core/lofreq/callparallel/environment.yml +++ b/modules/nf-core/lofreq/callparallel/environment.yml @@ -1,3 +1,4 @@ +name: lofreq_callparallel channels: - conda-forge - bioconda diff --git a/modules/nf-core/lofreq/filter/environment.yml b/modules/nf-core/lofreq/filter/environment.yml index 5334b7ba8eb..a5a2389c458 100644 --- a/modules/nf-core/lofreq/filter/environment.yml +++ b/modules/nf-core/lofreq/filter/environment.yml @@ -1,3 +1,4 @@ +name: lofreq_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/lofreq/indelqual/environment.yml b/modules/nf-core/lofreq/indelqual/environment.yml index 5334b7ba8eb..43d9f2afdcb 100644 --- a/modules/nf-core/lofreq/indelqual/environment.yml +++ b/modules/nf-core/lofreq/indelqual/environment.yml @@ -1,3 +1,4 @@ +name: lofreq_indelqual channels: - conda-forge - bioconda diff --git a/modules/nf-core/lofreq/somatic/environment.yml b/modules/nf-core/lofreq/somatic/environment.yml index 5334b7ba8eb..af6a98fb867 100644 --- a/modules/nf-core/lofreq/somatic/environment.yml +++ b/modules/nf-core/lofreq/somatic/environment.yml @@ -1,3 +1,4 @@ +name: lofreq_somatic channels: - conda-forge - bioconda diff --git a/modules/nf-core/macrel/contigs/environment.yml b/modules/nf-core/macrel/contigs/environment.yml index 20d2762dbbd..e6c11226a21 100644 --- a/modules/nf-core/macrel/contigs/environment.yml +++ b/modules/nf-core/macrel/contigs/environment.yml @@ -1,3 +1,4 @@ +name: macrel_contigs channels: - conda-forge - bioconda diff --git a/modules/nf-core/macs2/callpeak/environment.yml b/modules/nf-core/macs2/callpeak/environment.yml index df78f11da5a..bc42d766dc2 100644 --- a/modules/nf-core/macs2/callpeak/environment.yml +++ b/modules/nf-core/macs2/callpeak/environment.yml @@ -1,3 +1,4 @@ +name: macs2_callpeak channels: - conda-forge - bioconda diff --git a/modules/nf-core/mafft/environment.yml b/modules/nf-core/mafft/environment.yml index 1368d9515d7..fff5c9f3599 100644 --- a/modules/nf-core/mafft/environment.yml +++ b/modules/nf-core/mafft/environment.yml @@ -1,3 +1,4 @@ +name: mafft channels: - conda-forge - bioconda diff --git a/modules/nf-core/mageck/count/environment.yml b/modules/nf-core/mageck/count/environment.yml index d21c59d75e3..0729b2848b8 100644 --- a/modules/nf-core/mageck/count/environment.yml +++ b/modules/nf-core/mageck/count/environment.yml @@ -1,3 +1,4 @@ +name: mageck_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/mageck/mle/environment.yml b/modules/nf-core/mageck/mle/environment.yml index d21c59d75e3..27d8c76218c 100644 --- a/modules/nf-core/mageck/mle/environment.yml +++ b/modules/nf-core/mageck/mle/environment.yml @@ -1,3 +1,4 @@ +name: mageck_mle channels: - conda-forge - bioconda diff --git a/modules/nf-core/mageck/test/environment.yml b/modules/nf-core/mageck/test/environment.yml index d21c59d75e3..622038ac955 100644 --- a/modules/nf-core/mageck/test/environment.yml +++ b/modules/nf-core/mageck/test/environment.yml @@ -1,3 +1,4 @@ +name: mageck_test channels: - conda-forge - bioconda diff --git a/modules/nf-core/malt/build/environment.yml b/modules/nf-core/malt/build/environment.yml index 84b8fb88f55..a3b37a673bb 100644 --- a/modules/nf-core/malt/build/environment.yml +++ b/modules/nf-core/malt/build/environment.yml @@ -1,3 +1,4 @@ +name: malt_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/malt/run/environment.yml b/modules/nf-core/malt/run/environment.yml index 84b8fb88f55..c53d7205682 100644 --- a/modules/nf-core/malt/run/environment.yml +++ b/modules/nf-core/malt/run/environment.yml @@ -1,3 +1,4 @@ +name: malt_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/maltextract/environment.yml b/modules/nf-core/maltextract/environment.yml index 7783dd944f7..f87a299c238 100644 --- a/modules/nf-core/maltextract/environment.yml +++ b/modules/nf-core/maltextract/environment.yml @@ -1,3 +1,4 @@ +name: maltextract channels: - conda-forge - bioconda diff --git a/modules/nf-core/manta/convertinversion/environment.yml b/modules/nf-core/manta/convertinversion/environment.yml index 09378ac1acf..70b02b79599 100644 --- a/modules/nf-core/manta/convertinversion/environment.yml +++ b/modules/nf-core/manta/convertinversion/environment.yml @@ -1,3 +1,4 @@ +name: manta_convertinversion channels: - conda-forge - bioconda diff --git a/modules/nf-core/manta/germline/environment.yml b/modules/nf-core/manta/germline/environment.yml index 235b1ba75d6..4a63d3084b2 100644 --- a/modules/nf-core/manta/germline/environment.yml +++ b/modules/nf-core/manta/germline/environment.yml @@ -1,3 +1,4 @@ +name: manta_germline channels: - conda-forge - bioconda diff --git a/modules/nf-core/manta/somatic/environment.yml b/modules/nf-core/manta/somatic/environment.yml index 235b1ba75d6..aac8827dfcb 100644 --- a/modules/nf-core/manta/somatic/environment.yml +++ b/modules/nf-core/manta/somatic/environment.yml @@ -1,3 +1,4 @@ +name: manta_somatic channels: - conda-forge - bioconda diff --git a/modules/nf-core/manta/tumoronly/environment.yml b/modules/nf-core/manta/tumoronly/environment.yml index 235b1ba75d6..cf5db361e00 100644 --- a/modules/nf-core/manta/tumoronly/environment.yml +++ b/modules/nf-core/manta/tumoronly/environment.yml @@ -1,3 +1,4 @@ +name: manta_tumoronly channels: - conda-forge - bioconda diff --git a/modules/nf-core/mapad/index/environment.yml b/modules/nf-core/mapad/index/environment.yml index 4a6a86819de..ef982a582aa 100644 --- a/modules/nf-core/mapad/index/environment.yml +++ b/modules/nf-core/mapad/index/environment.yml @@ -1,3 +1,4 @@ +name: mapad_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/mapad/map/environment.yml b/modules/nf-core/mapad/map/environment.yml index f75709818b6..aac846ba736 100644 --- a/modules/nf-core/mapad/map/environment.yml +++ b/modules/nf-core/mapad/map/environment.yml @@ -1,3 +1,4 @@ +name: mapad_map channels: - conda-forge - bioconda diff --git a/modules/nf-core/mapdamage2/environment.yml b/modules/nf-core/mapdamage2/environment.yml index d0e033357a1..92be8ef3ebe 100644 --- a/modules/nf-core/mapdamage2/environment.yml +++ b/modules/nf-core/mapdamage2/environment.yml @@ -1,3 +1,4 @@ +name: mapdamage2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/mash/dist/environment.yml b/modules/nf-core/mash/dist/environment.yml index 2cfd30d1c7f..34a5237d099 100644 --- a/modules/nf-core/mash/dist/environment.yml +++ b/modules/nf-core/mash/dist/environment.yml @@ -1,3 +1,4 @@ +name: mash_dist channels: - conda-forge - bioconda diff --git a/modules/nf-core/mash/screen/environment.yml b/modules/nf-core/mash/screen/environment.yml index 2cfd30d1c7f..d892dee5525 100644 --- a/modules/nf-core/mash/screen/environment.yml +++ b/modules/nf-core/mash/screen/environment.yml @@ -1,3 +1,4 @@ +name: mash_screen channels: - conda-forge - bioconda diff --git a/modules/nf-core/mash/sketch/environment.yml b/modules/nf-core/mash/sketch/environment.yml index 2cfd30d1c7f..968725ed3bd 100644 --- a/modules/nf-core/mash/sketch/environment.yml +++ b/modules/nf-core/mash/sketch/environment.yml @@ -1,3 +1,4 @@ +name: mash_sketch channels: - conda-forge - bioconda diff --git a/modules/nf-core/mashtree/environment.yml b/modules/nf-core/mashtree/environment.yml index 24037d860f5..5bb235c7975 100644 --- a/modules/nf-core/mashtree/environment.yml +++ b/modules/nf-core/mashtree/environment.yml @@ -1,3 +1,4 @@ +name: mashtree channels: - conda-forge - bioconda diff --git a/modules/nf-core/maxbin2/environment.yml b/modules/nf-core/maxbin2/environment.yml index ba99c8f3e84..84066ce6516 100644 --- a/modules/nf-core/maxbin2/environment.yml +++ b/modules/nf-core/maxbin2/environment.yml @@ -1,3 +1,4 @@ +name: maxbin2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/maxquant/lfq/environment.yml b/modules/nf-core/maxquant/lfq/environment.yml index 491c00be307..22c40f04c05 100644 --- a/modules/nf-core/maxquant/lfq/environment.yml +++ b/modules/nf-core/maxquant/lfq/environment.yml @@ -1,3 +1,4 @@ +name: maxquant_lfq channels: - conda-forge - bioconda diff --git a/modules/nf-core/mcquant/environment.yml b/modules/nf-core/mcquant/environment.yml index bcd3a8b1c63..5ee62892c6b 100644 --- a/modules/nf-core/mcquant/environment.yml +++ b/modules/nf-core/mcquant/environment.yml @@ -1,3 +1,4 @@ +name: mcquant channels: - conda-forge - bioconda diff --git a/modules/nf-core/mcroni/environment.yml b/modules/nf-core/mcroni/environment.yml index 3d8b2207100..572bc527c7b 100644 --- a/modules/nf-core/mcroni/environment.yml +++ b/modules/nf-core/mcroni/environment.yml @@ -1,3 +1,4 @@ +name: mcroni channels: - conda-forge - bioconda diff --git a/modules/nf-core/md5sum/environment.yml b/modules/nf-core/md5sum/environment.yml index d9675fcebb4..a7220f8ceee 100644 --- a/modules/nf-core/md5sum/environment.yml +++ b/modules/nf-core/md5sum/environment.yml @@ -1,3 +1,4 @@ +name: md5sum channels: - conda-forge - bioconda diff --git a/modules/nf-core/medaka/environment.yml b/modules/nf-core/medaka/environment.yml index fea1532dfea..20e2cbbed3e 100644 --- a/modules/nf-core/medaka/environment.yml +++ b/modules/nf-core/medaka/environment.yml @@ -1,3 +1,4 @@ +name: medaka channels: - conda-forge - bioconda diff --git a/modules/nf-core/megahit/environment.yml b/modules/nf-core/megahit/environment.yml index 6e5ce385428..aac2f99128a 100644 --- a/modules/nf-core/megahit/environment.yml +++ b/modules/nf-core/megahit/environment.yml @@ -1,3 +1,4 @@ +name: megahit channels: - conda-forge - bioconda diff --git a/modules/nf-core/megan/daa2info/environment.yml b/modules/nf-core/megan/daa2info/environment.yml index 471e5507a09..6b12a615430 100644 --- a/modules/nf-core/megan/daa2info/environment.yml +++ b/modules/nf-core/megan/daa2info/environment.yml @@ -1,3 +1,4 @@ +name: megan_daa2info channels: - conda-forge - bioconda diff --git a/modules/nf-core/megan/rma2info/environment.yml b/modules/nf-core/megan/rma2info/environment.yml index 471e5507a09..28a3f6f8e55 100644 --- a/modules/nf-core/megan/rma2info/environment.yml +++ b/modules/nf-core/megan/rma2info/environment.yml @@ -1,3 +1,4 @@ +name: megan_rma2info channels: - conda-forge - bioconda diff --git a/modules/nf-core/meningotype/environment.yml b/modules/nf-core/meningotype/environment.yml index 73220ad01c7..6e3dd5136e5 100644 --- a/modules/nf-core/meningotype/environment.yml +++ b/modules/nf-core/meningotype/environment.yml @@ -1,3 +1,4 @@ +name: meningotype channels: - conda-forge - bioconda diff --git a/modules/nf-core/merqury/environment.yml b/modules/nf-core/merqury/environment.yml index 222cf5f2448..b73f4aea5a8 100644 --- a/modules/nf-core/merqury/environment.yml +++ b/modules/nf-core/merqury/environment.yml @@ -1,3 +1,4 @@ +name: merqury channels: - conda-forge - bioconda diff --git a/modules/nf-core/merquryfk/katcomp/environment.yml b/modules/nf-core/merquryfk/katcomp/environment.yml index bcd3a8b1c63..80174c19453 100644 --- a/modules/nf-core/merquryfk/katcomp/environment.yml +++ b/modules/nf-core/merquryfk/katcomp/environment.yml @@ -1,3 +1,4 @@ +name: merquryfk_katcomp channels: - conda-forge - bioconda diff --git a/modules/nf-core/merquryfk/katgc/environment.yml b/modules/nf-core/merquryfk/katgc/environment.yml index bcd3a8b1c63..4213934f418 100644 --- a/modules/nf-core/merquryfk/katgc/environment.yml +++ b/modules/nf-core/merquryfk/katgc/environment.yml @@ -1,3 +1,4 @@ +name: merquryfk_katgc channels: - conda-forge - bioconda diff --git a/modules/nf-core/merquryfk/merquryfk/environment.yml b/modules/nf-core/merquryfk/merquryfk/environment.yml index bcd3a8b1c63..44a5ee9bbf3 100644 --- a/modules/nf-core/merquryfk/merquryfk/environment.yml +++ b/modules/nf-core/merquryfk/merquryfk/environment.yml @@ -1,3 +1,4 @@ +name: merquryfk_merquryfk channels: - conda-forge - bioconda diff --git a/modules/nf-core/merquryfk/ploidyplot/environment.yml b/modules/nf-core/merquryfk/ploidyplot/environment.yml index bcd3a8b1c63..ae416adce9c 100644 --- a/modules/nf-core/merquryfk/ploidyplot/environment.yml +++ b/modules/nf-core/merquryfk/ploidyplot/environment.yml @@ -1,3 +1,4 @@ +name: merquryfk_ploidyplot channels: - conda-forge - bioconda diff --git a/modules/nf-core/meryl/count/environment.yml b/modules/nf-core/meryl/count/environment.yml index e5344528c7e..e2bac0f2ec1 100644 --- a/modules/nf-core/meryl/count/environment.yml +++ b/modules/nf-core/meryl/count/environment.yml @@ -1,3 +1,4 @@ +name: meryl_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/meryl/histogram/environment.yml b/modules/nf-core/meryl/histogram/environment.yml index e5344528c7e..4de66ee1a7c 100644 --- a/modules/nf-core/meryl/histogram/environment.yml +++ b/modules/nf-core/meryl/histogram/environment.yml @@ -1,3 +1,4 @@ +name: meryl_histogram channels: - conda-forge - bioconda diff --git a/modules/nf-core/meryl/unionsum/environment.yml b/modules/nf-core/meryl/unionsum/environment.yml index e5344528c7e..5ff25fed86b 100644 --- a/modules/nf-core/meryl/unionsum/environment.yml +++ b/modules/nf-core/meryl/unionsum/environment.yml @@ -1,3 +1,4 @@ +name: meryl_unionsum channels: - conda-forge - bioconda diff --git a/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml b/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml index 13787faeb38..3140be6a47b 100644 --- a/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml +++ b/modules/nf-core/metabat2/jgisummarizebamcontigdepths/environment.yml @@ -1,3 +1,4 @@ +name: metabat2_jgisummarizebamcontigdepths channels: - conda-forge - bioconda diff --git a/modules/nf-core/metabat2/metabat2/environment.yml b/modules/nf-core/metabat2/metabat2/environment.yml index 13787faeb38..7ff056c096d 100644 --- a/modules/nf-core/metabat2/metabat2/environment.yml +++ b/modules/nf-core/metabat2/metabat2/environment.yml @@ -1,3 +1,4 @@ +name: metabat2_metabat2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaeuk/easypredict/environment.yml b/modules/nf-core/metaeuk/easypredict/environment.yml index d777035ffc8..f56445fe0ee 100644 --- a/modules/nf-core/metaeuk/easypredict/environment.yml +++ b/modules/nf-core/metaeuk/easypredict/environment.yml @@ -1,3 +1,4 @@ +name: metaeuk_easypredict channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaphlan/makedb/environment.yml b/modules/nf-core/metaphlan/makedb/environment.yml index 5ff5064e1a1..ae49a4ef298 100644 --- a/modules/nf-core/metaphlan/makedb/environment.yml +++ b/modules/nf-core/metaphlan/makedb/environment.yml @@ -1,3 +1,4 @@ +name: metaphlan_makedb channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml b/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml index 5ff5064e1a1..917e8c72d14 100644 --- a/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml +++ b/modules/nf-core/metaphlan/mergemetaphlantables/environment.yml @@ -1,3 +1,4 @@ +name: metaphlan_mergemetaphlantables channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaphlan/metaphlan/environment.yml b/modules/nf-core/metaphlan/metaphlan/environment.yml index 5ff5064e1a1..694b6f7f32a 100644 --- a/modules/nf-core/metaphlan/metaphlan/environment.yml +++ b/modules/nf-core/metaphlan/metaphlan/environment.yml @@ -1,3 +1,4 @@ +name: metaphlan_metaphlan channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml b/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml index e2531689985..2ba8b925ad2 100644 --- a/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml +++ b/modules/nf-core/metaphlan3/mergemetaphlantables/environment.yml @@ -1,3 +1,4 @@ +name: metaphlan3_mergemetaphlantables channels: - conda-forge - bioconda diff --git a/modules/nf-core/metaphlan3/metaphlan3/environment.yml b/modules/nf-core/metaphlan3/metaphlan3/environment.yml index e2531689985..9c0b5674a73 100644 --- a/modules/nf-core/metaphlan3/metaphlan3/environment.yml +++ b/modules/nf-core/metaphlan3/metaphlan3/environment.yml @@ -1,3 +1,4 @@ +name: metaphlan3_metaphlan3 channels: - conda-forge - bioconda diff --git a/modules/nf-core/methyldackel/extract/environment.yml b/modules/nf-core/methyldackel/extract/environment.yml index c7d7b81d011..03f1b0201f2 100644 --- a/modules/nf-core/methyldackel/extract/environment.yml +++ b/modules/nf-core/methyldackel/extract/environment.yml @@ -1,3 +1,4 @@ +name: methyldackel_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/methyldackel/mbias/environment.yml b/modules/nf-core/methyldackel/mbias/environment.yml index c7d7b81d011..f7cebb6fa69 100644 --- a/modules/nf-core/methyldackel/mbias/environment.yml +++ b/modules/nf-core/methyldackel/mbias/environment.yml @@ -1,3 +1,4 @@ +name: methyldackel_mbias channels: - conda-forge - bioconda diff --git a/modules/nf-core/midas/run/environment.yml b/modules/nf-core/midas/run/environment.yml index ac2c366f849..368cb74ff44 100644 --- a/modules/nf-core/midas/run/environment.yml +++ b/modules/nf-core/midas/run/environment.yml @@ -1,3 +1,4 @@ +name: midas_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/mindagap/mindagap/environment.yml b/modules/nf-core/mindagap/mindagap/environment.yml index 84760179a00..f380feeccba 100644 --- a/modules/nf-core/mindagap/mindagap/environment.yml +++ b/modules/nf-core/mindagap/mindagap/environment.yml @@ -1,3 +1,4 @@ +name: mindagap_mindagap channels: - conda-forge - bioconda diff --git a/modules/nf-core/minia/environment.yml b/modules/nf-core/minia/environment.yml index 1f9ef497106..10e455291fa 100644 --- a/modules/nf-core/minia/environment.yml +++ b/modules/nf-core/minia/environment.yml @@ -1,3 +1,4 @@ +name: minia channels: - conda-forge - bioconda diff --git a/modules/nf-core/miniasm/environment.yml b/modules/nf-core/miniasm/environment.yml index 818e39c7f7c..34a35e5da7c 100644 --- a/modules/nf-core/miniasm/environment.yml +++ b/modules/nf-core/miniasm/environment.yml @@ -1,3 +1,4 @@ +name: miniasm channels: - conda-forge - bioconda diff --git a/modules/nf-core/minimap2/align/environment.yml b/modules/nf-core/minimap2/align/environment.yml index 59432e8b4ac..60b9a8bf5dc 100644 --- a/modules/nf-core/minimap2/align/environment.yml +++ b/modules/nf-core/minimap2/align/environment.yml @@ -1,3 +1,4 @@ +name: minimap2_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/minimap2/index/environment.yml b/modules/nf-core/minimap2/index/environment.yml index 80724f85f5c..2a66e4104c9 100644 --- a/modules/nf-core/minimap2/index/environment.yml +++ b/modules/nf-core/minimap2/index/environment.yml @@ -1,3 +1,4 @@ +name: minimap2_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/miniprot/align/environment.yml b/modules/nf-core/miniprot/align/environment.yml index 06bc1885f2f..d437e07a24c 100644 --- a/modules/nf-core/miniprot/align/environment.yml +++ b/modules/nf-core/miniprot/align/environment.yml @@ -1,3 +1,4 @@ +name: miniprot_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/miniprot/index/environment.yml b/modules/nf-core/miniprot/index/environment.yml index 06bc1885f2f..1de55fae09e 100644 --- a/modules/nf-core/miniprot/index/environment.yml +++ b/modules/nf-core/miniprot/index/environment.yml @@ -1,3 +1,4 @@ +name: miniprot_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/miranda/environment.yml b/modules/nf-core/miranda/environment.yml index f5a8befdb9e..a04ca7f84b1 100644 --- a/modules/nf-core/miranda/environment.yml +++ b/modules/nf-core/miranda/environment.yml @@ -1,3 +1,4 @@ +name: miranda channels: - conda-forge - bioconda diff --git a/modules/nf-core/mitohifi/findmitoreference/environment.yml b/modules/nf-core/mitohifi/findmitoreference/environment.yml index bcd3a8b1c63..5aafa1a1001 100644 --- a/modules/nf-core/mitohifi/findmitoreference/environment.yml +++ b/modules/nf-core/mitohifi/findmitoreference/environment.yml @@ -1,3 +1,4 @@ +name: mitohifi_findmitoreference channels: - conda-forge - bioconda diff --git a/modules/nf-core/mlst/environment.yml b/modules/nf-core/mlst/environment.yml index b55e9af3a5f..898008d3782 100644 --- a/modules/nf-core/mlst/environment.yml +++ b/modules/nf-core/mlst/environment.yml @@ -1,3 +1,4 @@ +name: mlst channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/cluster/environment.yml b/modules/nf-core/mmseqs/cluster/environment.yml index 54c1080c958..6ee318c37e0 100644 --- a/modules/nf-core/mmseqs/cluster/environment.yml +++ b/modules/nf-core/mmseqs/cluster/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_cluster channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/createdb/environment.yml b/modules/nf-core/mmseqs/createdb/environment.yml index 54c1080c958..50c28f174e7 100644 --- a/modules/nf-core/mmseqs/createdb/environment.yml +++ b/modules/nf-core/mmseqs/createdb/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_createdb channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/createindex/environment.yml b/modules/nf-core/mmseqs/createindex/environment.yml index 54c1080c958..b61b283dc11 100644 --- a/modules/nf-core/mmseqs/createindex/environment.yml +++ b/modules/nf-core/mmseqs/createindex/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_createindex channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/createtsv/environment.yml b/modules/nf-core/mmseqs/createtsv/environment.yml index 54c1080c958..8b2ec933b12 100644 --- a/modules/nf-core/mmseqs/createtsv/environment.yml +++ b/modules/nf-core/mmseqs/createtsv/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_createtsv channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/databases/environment.yml b/modules/nf-core/mmseqs/databases/environment.yml index 54c1080c958..025380e0440 100644 --- a/modules/nf-core/mmseqs/databases/environment.yml +++ b/modules/nf-core/mmseqs/databases/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_databases channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/easysearch/environment.yml b/modules/nf-core/mmseqs/easysearch/environment.yml index 54c1080c958..945dfc89196 100644 --- a/modules/nf-core/mmseqs/easysearch/environment.yml +++ b/modules/nf-core/mmseqs/easysearch/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_easysearch channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/linclust/environment.yml b/modules/nf-core/mmseqs/linclust/environment.yml index 54c1080c958..65119daf5fb 100644 --- a/modules/nf-core/mmseqs/linclust/environment.yml +++ b/modules/nf-core/mmseqs/linclust/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_linclust channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/search/environment.yml b/modules/nf-core/mmseqs/search/environment.yml index 54c1080c958..40019efa5e2 100644 --- a/modules/nf-core/mmseqs/search/environment.yml +++ b/modules/nf-core/mmseqs/search/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_search channels: - conda-forge - bioconda diff --git a/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml b/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml index 54c1080c958..9783c56a711 100644 --- a/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml +++ b/modules/nf-core/mmseqs/tsv2exprofiledb/environment.yml @@ -1,3 +1,4 @@ +name: mmseqs_tsv2exprofiledb channels: - conda-forge - bioconda diff --git a/modules/nf-core/mobsuite/recon/environment.yml b/modules/nf-core/mobsuite/recon/environment.yml index 7e82f841f70..caaf7c59fb4 100644 --- a/modules/nf-core/mobsuite/recon/environment.yml +++ b/modules/nf-core/mobsuite/recon/environment.yml @@ -1,3 +1,4 @@ +name: mobsuite_recon channels: - conda-forge - bioconda diff --git a/modules/nf-core/mosdepth/environment.yml b/modules/nf-core/mosdepth/environment.yml index 530c1ff2690..b12e3cb1274 100644 --- a/modules/nf-core/mosdepth/environment.yml +++ b/modules/nf-core/mosdepth/environment.yml @@ -1,3 +1,4 @@ +name: mosdepth channels: - conda-forge - bioconda diff --git a/modules/nf-core/motus/downloaddb/environment.yml b/modules/nf-core/motus/downloaddb/environment.yml index e622cdce7fa..896e2bbc68b 100644 --- a/modules/nf-core/motus/downloaddb/environment.yml +++ b/modules/nf-core/motus/downloaddb/environment.yml @@ -1,3 +1,4 @@ +name: motus_downloaddb channels: - conda-forge - bioconda diff --git a/modules/nf-core/motus/merge/environment.yml b/modules/nf-core/motus/merge/environment.yml index e622cdce7fa..d8a79e84e7f 100644 --- a/modules/nf-core/motus/merge/environment.yml +++ b/modules/nf-core/motus/merge/environment.yml @@ -1,3 +1,4 @@ +name: motus_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/motus/profile/environment.yml b/modules/nf-core/motus/profile/environment.yml index e622cdce7fa..854d9ed095d 100644 --- a/modules/nf-core/motus/profile/environment.yml +++ b/modules/nf-core/motus/profile/environment.yml @@ -1,3 +1,4 @@ +name: motus_profile channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensor/msi/environment.yml b/modules/nf-core/msisensor/msi/environment.yml index cde5042a0fd..d600fa9aa60 100644 --- a/modules/nf-core/msisensor/msi/environment.yml +++ b/modules/nf-core/msisensor/msi/environment.yml @@ -1,3 +1,4 @@ +name: msisensor_msi channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensor/scan/environment.yml b/modules/nf-core/msisensor/scan/environment.yml index cde5042a0fd..e6e524d5a82 100644 --- a/modules/nf-core/msisensor/scan/environment.yml +++ b/modules/nf-core/msisensor/scan/environment.yml @@ -1,3 +1,4 @@ +name: msisensor_scan channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensor2/msi/environment.yml b/modules/nf-core/msisensor2/msi/environment.yml index 76f71e02ebb..ea5622b36d5 100644 --- a/modules/nf-core/msisensor2/msi/environment.yml +++ b/modules/nf-core/msisensor2/msi/environment.yml @@ -1,3 +1,4 @@ +name: msisensor2_msi channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensor2/scan/environment.yml b/modules/nf-core/msisensor2/scan/environment.yml index 76f71e02ebb..3c74c52059f 100644 --- a/modules/nf-core/msisensor2/scan/environment.yml +++ b/modules/nf-core/msisensor2/scan/environment.yml @@ -1,3 +1,4 @@ +name: msisensor2_scan channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensorpro/msisomatic/environment.yml b/modules/nf-core/msisensorpro/msisomatic/environment.yml index 6d85f22481b..147a9d6b855 100644 --- a/modules/nf-core/msisensorpro/msisomatic/environment.yml +++ b/modules/nf-core/msisensorpro/msisomatic/environment.yml @@ -1,3 +1,4 @@ +name: msisensorpro_msisomatic channels: - conda-forge - bioconda diff --git a/modules/nf-core/msisensorpro/scan/environment.yml b/modules/nf-core/msisensorpro/scan/environment.yml index 6d85f22481b..377c28a61b1 100644 --- a/modules/nf-core/msisensorpro/scan/environment.yml +++ b/modules/nf-core/msisensorpro/scan/environment.yml @@ -1,3 +1,4 @@ +name: msisensorpro_scan channels: - conda-forge - bioconda diff --git a/modules/nf-core/mtnucratio/environment.yml b/modules/nf-core/mtnucratio/environment.yml index 0a5a0cfd66e..98919877b33 100644 --- a/modules/nf-core/mtnucratio/environment.yml +++ b/modules/nf-core/mtnucratio/environment.yml @@ -1,3 +1,4 @@ +name: mtnucratio channels: - conda-forge - bioconda diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml index 9d0e6b2090c..e5e14e8395b 100644 --- a/modules/nf-core/multiqc/environment.yml +++ b/modules/nf-core/multiqc/environment.yml @@ -1,3 +1,4 @@ +name: MultiQC channels: - conda-forge - bioconda diff --git a/modules/nf-core/multivcfanalyzer/environment.yml b/modules/nf-core/multivcfanalyzer/environment.yml index 5752f23ac61..37f96f5e31d 100644 --- a/modules/nf-core/multivcfanalyzer/environment.yml +++ b/modules/nf-core/multivcfanalyzer/environment.yml @@ -1,3 +1,4 @@ +name: multivcfanalyzer channels: - conda-forge - bioconda diff --git a/modules/nf-core/mummer/environment.yml b/modules/nf-core/mummer/environment.yml index 775ee40b43f..5028135e1f3 100644 --- a/modules/nf-core/mummer/environment.yml +++ b/modules/nf-core/mummer/environment.yml @@ -1,3 +1,4 @@ +name: mummer channels: - conda-forge - bioconda diff --git a/modules/nf-core/muscle/environment.yml b/modules/nf-core/muscle/environment.yml index c9e36720264..e183f55ce43 100644 --- a/modules/nf-core/muscle/environment.yml +++ b/modules/nf-core/muscle/environment.yml @@ -1,3 +1,4 @@ +name: muscle channels: - conda-forge - bioconda diff --git a/modules/nf-core/muscle5/super5/environment.yml b/modules/nf-core/muscle5/super5/environment.yml index 6c7cdb4df4b..f2c60f16d00 100644 --- a/modules/nf-core/muscle5/super5/environment.yml +++ b/modules/nf-core/muscle5/super5/environment.yml @@ -1,3 +1,4 @@ +name: muscle5_super5 channels: - conda-forge - bioconda diff --git a/modules/nf-core/mykrobe/predict/environment.yml b/modules/nf-core/mykrobe/predict/environment.yml index e40168e721f..13cb49d4d02 100644 --- a/modules/nf-core/mykrobe/predict/environment.yml +++ b/modules/nf-core/mykrobe/predict/environment.yml @@ -1,3 +1,4 @@ +name: mykrobe_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/nanocomp/environment.yml b/modules/nf-core/nanocomp/environment.yml index 8a0799d439d..dc92191398c 100644 --- a/modules/nf-core/nanocomp/environment.yml +++ b/modules/nf-core/nanocomp/environment.yml @@ -1,3 +1,4 @@ +name: nanocomp channels: - conda-forge - bioconda diff --git a/modules/nf-core/nanolyse/environment.yml b/modules/nf-core/nanolyse/environment.yml index 830cc4d709a..7d738ba92c7 100644 --- a/modules/nf-core/nanolyse/environment.yml +++ b/modules/nf-core/nanolyse/environment.yml @@ -1,3 +1,4 @@ +name: nanolyse channels: - conda-forge - bioconda diff --git a/modules/nf-core/nanomonsv/parse/environment.yml b/modules/nf-core/nanomonsv/parse/environment.yml index 0aeac2b80e1..3288de7a391 100644 --- a/modules/nf-core/nanomonsv/parse/environment.yml +++ b/modules/nf-core/nanomonsv/parse/environment.yml @@ -1,3 +1,4 @@ +name: nanomonsv_parse channels: - conda-forge - bioconda diff --git a/modules/nf-core/nanoplot/environment.yml b/modules/nf-core/nanoplot/environment.yml index 93d4cad454c..219cd2e3e0e 100644 --- a/modules/nf-core/nanoplot/environment.yml +++ b/modules/nf-core/nanoplot/environment.yml @@ -1,3 +1,4 @@ +name: nanoplot channels: - conda-forge - bioconda diff --git a/modules/nf-core/ncbigenomedownload/environment.yml b/modules/nf-core/ncbigenomedownload/environment.yml index 91f0e9e8906..642bf3885ec 100644 --- a/modules/nf-core/ncbigenomedownload/environment.yml +++ b/modules/nf-core/ncbigenomedownload/environment.yml @@ -1,3 +1,4 @@ +name: ncbigenomedownload channels: - conda-forge - bioconda diff --git a/modules/nf-core/nextclade/datasetget/environment.yml b/modules/nf-core/nextclade/datasetget/environment.yml index 7658cbd2bb0..cdd9f646f4a 100644 --- a/modules/nf-core/nextclade/datasetget/environment.yml +++ b/modules/nf-core/nextclade/datasetget/environment.yml @@ -1,3 +1,4 @@ +name: nextclade_datasetget channels: - conda-forge - bioconda diff --git a/modules/nf-core/nextclade/run/environment.yml b/modules/nf-core/nextclade/run/environment.yml index 7658cbd2bb0..1e50e8d47b1 100644 --- a/modules/nf-core/nextclade/run/environment.yml +++ b/modules/nf-core/nextclade/run/environment.yml @@ -1,3 +1,4 @@ +name: nextclade_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/nextgenmap/environment.yml b/modules/nf-core/nextgenmap/environment.yml index c6aae7bb5fa..f5808831232 100644 --- a/modules/nf-core/nextgenmap/environment.yml +++ b/modules/nf-core/nextgenmap/environment.yml @@ -1,3 +1,4 @@ +name: nextgenmap channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngmaster/environment.yml b/modules/nf-core/ngmaster/environment.yml index 487d5dd7a15..3fab43935b9 100644 --- a/modules/nf-core/ngmaster/environment.yml +++ b/modules/nf-core/ngmaster/environment.yml @@ -1,3 +1,4 @@ +name: ngmaster channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngmerge/environment.yml b/modules/nf-core/ngmerge/environment.yml index 1ed73d07e8c..55edab56798 100644 --- a/modules/nf-core/ngmerge/environment.yml +++ b/modules/nf-core/ngmerge/environment.yml @@ -1,3 +1,4 @@ +name: ngmerge channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngsbits/samplegender/environment.yml b/modules/nf-core/ngsbits/samplegender/environment.yml index dc641e2ff02..486c233c2f7 100644 --- a/modules/nf-core/ngsbits/samplegender/environment.yml +++ b/modules/nf-core/ngsbits/samplegender/environment.yml @@ -1,3 +1,4 @@ +name: ngsbits_samplegender channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngscheckmate/fastq/environment.yml b/modules/nf-core/ngscheckmate/fastq/environment.yml index fde8331fade..8360b8c4000 100644 --- a/modules/nf-core/ngscheckmate/fastq/environment.yml +++ b/modules/nf-core/ngscheckmate/fastq/environment.yml @@ -1,3 +1,4 @@ +name: ngscheckmate_fastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngscheckmate/ncm/environment.yml b/modules/nf-core/ngscheckmate/ncm/environment.yml index fde8331fade..bf185fc23e3 100644 --- a/modules/nf-core/ngscheckmate/ncm/environment.yml +++ b/modules/nf-core/ngscheckmate/ncm/environment.yml @@ -1,3 +1,4 @@ +name: ngscheckmate_ncm channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngscheckmate/patterngenerator/environment.yml b/modules/nf-core/ngscheckmate/patterngenerator/environment.yml index fde8331fade..b58ea344a76 100644 --- a/modules/nf-core/ngscheckmate/patterngenerator/environment.yml +++ b/modules/nf-core/ngscheckmate/patterngenerator/environment.yml @@ -1,3 +1,4 @@ +name: ngscheckmate_patterngenerator channels: - conda-forge - bioconda diff --git a/modules/nf-core/ngscheckmate/vafncm/environment.yml b/modules/nf-core/ngscheckmate/vafncm/environment.yml index fde8331fade..63fed805afc 100644 --- a/modules/nf-core/ngscheckmate/vafncm/environment.yml +++ b/modules/nf-core/ngscheckmate/vafncm/environment.yml @@ -1,3 +1,4 @@ +name: ngscheckmate_vafncm channels: - conda-forge - bioconda diff --git a/modules/nf-core/nonpareil/environment.yml b/modules/nf-core/nonpareil/environment.yml index 42e1fd03fa6..88ea544ce20 100644 --- a/modules/nf-core/nonpareil/environment.yml +++ b/modules/nf-core/nonpareil/environment.yml @@ -1,3 +1,4 @@ +name: nonpareil channels: - conda-forge - bioconda diff --git a/modules/nf-core/nucmer/environment.yml b/modules/nf-core/nucmer/environment.yml index 775ee40b43f..c46a65938bb 100644 --- a/modules/nf-core/nucmer/environment.yml +++ b/modules/nf-core/nucmer/environment.yml @@ -1,3 +1,4 @@ +name: nucmer channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/build/environment.yml b/modules/nf-core/odgi/build/environment.yml index 43b3c77c36b..0e0da523ee5 100644 --- a/modules/nf-core/odgi/build/environment.yml +++ b/modules/nf-core/odgi/build/environment.yml @@ -1,3 +1,4 @@ +name: odgi_build channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/draw/environment.yml b/modules/nf-core/odgi/draw/environment.yml index 43b3c77c36b..1e9a9832e36 100644 --- a/modules/nf-core/odgi/draw/environment.yml +++ b/modules/nf-core/odgi/draw/environment.yml @@ -1,3 +1,4 @@ +name: odgi_draw channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/layout/environment.yml b/modules/nf-core/odgi/layout/environment.yml index 43b3c77c36b..a5daafabefd 100644 --- a/modules/nf-core/odgi/layout/environment.yml +++ b/modules/nf-core/odgi/layout/environment.yml @@ -1,3 +1,4 @@ +name: odgi_layout channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/sort/environment.yml b/modules/nf-core/odgi/sort/environment.yml index 43b3c77c36b..569066463f9 100644 --- a/modules/nf-core/odgi/sort/environment.yml +++ b/modules/nf-core/odgi/sort/environment.yml @@ -1,3 +1,4 @@ +name: odgi_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/squeeze/environment.yml b/modules/nf-core/odgi/squeeze/environment.yml index 43b3c77c36b..28d5b8cfe41 100644 --- a/modules/nf-core/odgi/squeeze/environment.yml +++ b/modules/nf-core/odgi/squeeze/environment.yml @@ -1,3 +1,4 @@ +name: odgi_squeeze channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/stats/environment.yml b/modules/nf-core/odgi/stats/environment.yml index 43b3c77c36b..bce7105196a 100644 --- a/modules/nf-core/odgi/stats/environment.yml +++ b/modules/nf-core/odgi/stats/environment.yml @@ -1,3 +1,4 @@ +name: odgi_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/unchop/environment.yml b/modules/nf-core/odgi/unchop/environment.yml index 43b3c77c36b..f84a1b5aa3f 100644 --- a/modules/nf-core/odgi/unchop/environment.yml +++ b/modules/nf-core/odgi/unchop/environment.yml @@ -1,3 +1,4 @@ +name: odgi_unchop channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/view/environment.yml b/modules/nf-core/odgi/view/environment.yml index 43b3c77c36b..ffd246507d3 100644 --- a/modules/nf-core/odgi/view/environment.yml +++ b/modules/nf-core/odgi/view/environment.yml @@ -1,3 +1,4 @@ +name: odgi_view channels: - conda-forge - bioconda diff --git a/modules/nf-core/odgi/viz/environment.yml b/modules/nf-core/odgi/viz/environment.yml index 43b3c77c36b..420f71af0b7 100644 --- a/modules/nf-core/odgi/viz/environment.yml +++ b/modules/nf-core/odgi/viz/environment.yml @@ -1,3 +1,4 @@ +name: odgi_viz channels: - conda-forge - bioconda diff --git a/modules/nf-core/oncocnv/environment.yml b/modules/nf-core/oncocnv/environment.yml index 39d2d7429c5..4ff4416f7cf 100644 --- a/modules/nf-core/oncocnv/environment.yml +++ b/modules/nf-core/oncocnv/environment.yml @@ -1,3 +1,4 @@ +name: oncocnv channels: - conda-forge - bioconda diff --git a/modules/nf-core/openms/decoydatabase/environment.yml b/modules/nf-core/openms/decoydatabase/environment.yml index e781de50e23..4184259d4c1 100644 --- a/modules/nf-core/openms/decoydatabase/environment.yml +++ b/modules/nf-core/openms/decoydatabase/environment.yml @@ -1,3 +1,4 @@ +name: openms_decoydatabase channels: - conda-forge - bioconda diff --git a/modules/nf-core/openms/idmerger/environment.yml b/modules/nf-core/openms/idmerger/environment.yml index e781de50e23..68b85bd4162 100644 --- a/modules/nf-core/openms/idmerger/environment.yml +++ b/modules/nf-core/openms/idmerger/environment.yml @@ -1,3 +1,4 @@ +name: openms_idmerger channels: - conda-forge - bioconda diff --git a/modules/nf-core/optitype/environment.yml b/modules/nf-core/optitype/environment.yml index 85d6fea0619..f934ba665cf 100644 --- a/modules/nf-core/optitype/environment.yml +++ b/modules/nf-core/optitype/environment.yml @@ -1,3 +1,4 @@ +name: optitype channels: - conda-forge - bioconda diff --git a/modules/nf-core/paftools/sam2paf/environment.yml b/modules/nf-core/paftools/sam2paf/environment.yml index 59432e8b4ac..a2f0c8e94c4 100644 --- a/modules/nf-core/paftools/sam2paf/environment.yml +++ b/modules/nf-core/paftools/sam2paf/environment.yml @@ -1,3 +1,4 @@ +name: paftools_sam2paf channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairix/environment.yml b/modules/nf-core/pairix/environment.yml index edf346ec752..51ab40072d1 100644 --- a/modules/nf-core/pairix/environment.yml +++ b/modules/nf-core/pairix/environment.yml @@ -1,3 +1,4 @@ +name: pairix channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/dedup/environment.yml b/modules/nf-core/pairtools/dedup/environment.yml index e172e6efc39..2f7ccc10ccc 100644 --- a/modules/nf-core/pairtools/dedup/environment.yml +++ b/modules/nf-core/pairtools/dedup/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_dedup channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/flip/environment.yml b/modules/nf-core/pairtools/flip/environment.yml index e172e6efc39..f6fbc216e06 100644 --- a/modules/nf-core/pairtools/flip/environment.yml +++ b/modules/nf-core/pairtools/flip/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_flip channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/merge/environment.yml b/modules/nf-core/pairtools/merge/environment.yml index e172e6efc39..f85858a7014 100644 --- a/modules/nf-core/pairtools/merge/environment.yml +++ b/modules/nf-core/pairtools/merge/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/parse/environment.yml b/modules/nf-core/pairtools/parse/environment.yml index e172e6efc39..0bd69ca2b2f 100644 --- a/modules/nf-core/pairtools/parse/environment.yml +++ b/modules/nf-core/pairtools/parse/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_parse channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/restrict/environment.yml b/modules/nf-core/pairtools/restrict/environment.yml index e172e6efc39..4ba65c72272 100644 --- a/modules/nf-core/pairtools/restrict/environment.yml +++ b/modules/nf-core/pairtools/restrict/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_restrict channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/select/environment.yml b/modules/nf-core/pairtools/select/environment.yml index e172e6efc39..ef1b0d40f5f 100644 --- a/modules/nf-core/pairtools/select/environment.yml +++ b/modules/nf-core/pairtools/select/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_select channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/sort/environment.yml b/modules/nf-core/pairtools/sort/environment.yml index e172e6efc39..21bd011a167 100644 --- a/modules/nf-core/pairtools/sort/environment.yml +++ b/modules/nf-core/pairtools/sort/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/pairtools/stats/environment.yml b/modules/nf-core/pairtools/stats/environment.yml index e172e6efc39..c1f95fbc880 100644 --- a/modules/nf-core/pairtools/stats/environment.yml +++ b/modules/nf-core/pairtools/stats/environment.yml @@ -1,3 +1,4 @@ +name: pairtools_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/panaroo/run/environment.yml b/modules/nf-core/panaroo/run/environment.yml index 08269138596..b9022649ad5 100644 --- a/modules/nf-core/panaroo/run/environment.yml +++ b/modules/nf-core/panaroo/run/environment.yml @@ -1,3 +1,4 @@ +name: panaroo_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/pangolin/environment.yml b/modules/nf-core/pangolin/environment.yml index 03ca35eddff..3c4d98c8075 100644 --- a/modules/nf-core/pangolin/environment.yml +++ b/modules/nf-core/pangolin/environment.yml @@ -1,3 +1,4 @@ +name: pangolin channels: - conda-forge - bioconda diff --git a/modules/nf-core/parabricks/applybqsr/environment.yml b/modules/nf-core/parabricks/applybqsr/environment.yml index bcd3a8b1c63..034391085a7 100644 --- a/modules/nf-core/parabricks/applybqsr/environment.yml +++ b/modules/nf-core/parabricks/applybqsr/environment.yml @@ -1,3 +1,4 @@ +name: parabricks_applybqsr channels: - conda-forge - bioconda diff --git a/modules/nf-core/parabricks/fq2bam/environment.yml b/modules/nf-core/parabricks/fq2bam/environment.yml index bcd3a8b1c63..e838c7ff448 100644 --- a/modules/nf-core/parabricks/fq2bam/environment.yml +++ b/modules/nf-core/parabricks/fq2bam/environment.yml @@ -1,3 +1,4 @@ +name: parabricks_fq2bam channels: - conda-forge - bioconda diff --git a/modules/nf-core/paraclu/environment.yml b/modules/nf-core/paraclu/environment.yml index 5d6ccc67a78..da9b2686a34 100644 --- a/modules/nf-core/paraclu/environment.yml +++ b/modules/nf-core/paraclu/environment.yml @@ -1,3 +1,4 @@ +name: paraclu channels: - conda-forge - bioconda diff --git a/modules/nf-core/paragraph/idxdepth/environment.yml b/modules/nf-core/paragraph/idxdepth/environment.yml index 10913d8672b..6b2e8e78249 100644 --- a/modules/nf-core/paragraph/idxdepth/environment.yml +++ b/modules/nf-core/paragraph/idxdepth/environment.yml @@ -1,3 +1,4 @@ +name: paragraph_idxdepth channels: - conda-forge - bioconda diff --git a/modules/nf-core/paragraph/multigrmpy/environment.yml b/modules/nf-core/paragraph/multigrmpy/environment.yml index 10913d8672b..78f50758d79 100644 --- a/modules/nf-core/paragraph/multigrmpy/environment.yml +++ b/modules/nf-core/paragraph/multigrmpy/environment.yml @@ -1,3 +1,4 @@ +name: paragraph_multigrmpy channels: - conda-forge - bioconda diff --git a/modules/nf-core/paragraph/vcf2paragraph/environment.yml b/modules/nf-core/paragraph/vcf2paragraph/environment.yml index 10913d8672b..407d53d9c9c 100644 --- a/modules/nf-core/paragraph/vcf2paragraph/environment.yml +++ b/modules/nf-core/paragraph/vcf2paragraph/environment.yml @@ -1,3 +1,4 @@ +name: paragraph_vcf2paragraph channels: - conda-forge - bioconda diff --git a/modules/nf-core/pasty/environment.yml b/modules/nf-core/pasty/environment.yml index eb414270e07..6e4a7593aa4 100644 --- a/modules/nf-core/pasty/environment.yml +++ b/modules/nf-core/pasty/environment.yml @@ -1,3 +1,4 @@ +name: pasty channels: - conda-forge - bioconda diff --git a/modules/nf-core/pbbam/pbmerge/environment.yml b/modules/nf-core/pbbam/pbmerge/environment.yml index 270021108a2..7a7a01d9e2c 100644 --- a/modules/nf-core/pbbam/pbmerge/environment.yml +++ b/modules/nf-core/pbbam/pbmerge/environment.yml @@ -1,3 +1,4 @@ +name: pbbam_pbmerge channels: - conda-forge - bioconda diff --git a/modules/nf-core/pbccs/environment.yml b/modules/nf-core/pbccs/environment.yml index 2d78b56b1e5..bdc662b0027 100644 --- a/modules/nf-core/pbccs/environment.yml +++ b/modules/nf-core/pbccs/environment.yml @@ -1,3 +1,4 @@ +name: pbccs channels: - conda-forge - bioconda diff --git a/modules/nf-core/pbptyper/environment.yml b/modules/nf-core/pbptyper/environment.yml index 18c5f1de504..20409167393 100644 --- a/modules/nf-core/pbptyper/environment.yml +++ b/modules/nf-core/pbptyper/environment.yml @@ -1,3 +1,4 @@ +name: pbptyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/pear/environment.yml b/modules/nf-core/pear/environment.yml index 01b387e923d..127af628306 100644 --- a/modules/nf-core/pear/environment.yml +++ b/modules/nf-core/pear/environment.yml @@ -1,3 +1,4 @@ +name: pear channels: - conda-forge - bioconda diff --git a/modules/nf-core/peddy/environment.yml b/modules/nf-core/peddy/environment.yml index 993ba76fd4e..00e7cebe686 100644 --- a/modules/nf-core/peddy/environment.yml +++ b/modules/nf-core/peddy/environment.yml @@ -1,3 +1,4 @@ +name: peddy channels: - conda-forge - bioconda diff --git a/modules/nf-core/peka/environment.yml b/modules/nf-core/peka/environment.yml index 63608ad742e..21b6b106bef 100644 --- a/modules/nf-core/peka/environment.yml +++ b/modules/nf-core/peka/environment.yml @@ -1,3 +1,4 @@ +name: peka channels: - conda-forge - bioconda diff --git a/modules/nf-core/phantompeakqualtools/environment.yml b/modules/nf-core/phantompeakqualtools/environment.yml index eb34d39a5d5..afc5067b008 100644 --- a/modules/nf-core/phantompeakqualtools/environment.yml +++ b/modules/nf-core/phantompeakqualtools/environment.yml @@ -1,3 +1,4 @@ +name: phantompeakqualtools channels: - conda-forge - bioconda diff --git a/modules/nf-core/phispy/environment.yml b/modules/nf-core/phispy/environment.yml index 20f36e90ba9..73923e2ea51 100644 --- a/modules/nf-core/phispy/environment.yml +++ b/modules/nf-core/phispy/environment.yml @@ -1,3 +1,4 @@ +name: PhiSpy channels: - conda-forge - bioconda diff --git a/modules/nf-core/phyloflash/environment.yml b/modules/nf-core/phyloflash/environment.yml index 1bb0d6b7cc7..bf4ede4d29d 100644 --- a/modules/nf-core/phyloflash/environment.yml +++ b/modules/nf-core/phyloflash/environment.yml @@ -1,3 +1,4 @@ +name: phyloflash channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/addorreplacereadgroups/environment.yml b/modules/nf-core/picard/addorreplacereadgroups/environment.yml index be923a322f6..50e1a945b1f 100644 --- a/modules/nf-core/picard/addorreplacereadgroups/environment.yml +++ b/modules/nf-core/picard/addorreplacereadgroups/environment.yml @@ -1,3 +1,4 @@ +name: picard_addorreplacereadgroups channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/bedtointervallist/environment.yml b/modules/nf-core/picard/bedtointervallist/environment.yml index be923a322f6..94d3d26bd7b 100644 --- a/modules/nf-core/picard/bedtointervallist/environment.yml +++ b/modules/nf-core/picard/bedtointervallist/environment.yml @@ -1,3 +1,4 @@ +name: picard_bedtointervallist channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/cleansam/environment.yml b/modules/nf-core/picard/cleansam/environment.yml index be923a322f6..79f644cab9e 100644 --- a/modules/nf-core/picard/cleansam/environment.yml +++ b/modules/nf-core/picard/cleansam/environment.yml @@ -1,3 +1,4 @@ +name: picard_cleansam channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/collecthsmetrics/environment.yml b/modules/nf-core/picard/collecthsmetrics/environment.yml index be923a322f6..885af27d850 100644 --- a/modules/nf-core/picard/collecthsmetrics/environment.yml +++ b/modules/nf-core/picard/collecthsmetrics/environment.yml @@ -1,3 +1,4 @@ +name: picard_collecthsmetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/collectinsertsizemetrics/environment.yml b/modules/nf-core/picard/collectinsertsizemetrics/environment.yml index be923a322f6..5c85f8725f5 100644 --- a/modules/nf-core/picard/collectinsertsizemetrics/environment.yml +++ b/modules/nf-core/picard/collectinsertsizemetrics/environment.yml @@ -1,3 +1,4 @@ +name: picard_collectinsertsizemetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/collectmultiplemetrics/environment.yml b/modules/nf-core/picard/collectmultiplemetrics/environment.yml index be923a322f6..274805bdec1 100644 --- a/modules/nf-core/picard/collectmultiplemetrics/environment.yml +++ b/modules/nf-core/picard/collectmultiplemetrics/environment.yml @@ -1,3 +1,4 @@ +name: picard_collectmultiplemetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/collectrnaseqmetrics/environment.yml b/modules/nf-core/picard/collectrnaseqmetrics/environment.yml index be923a322f6..6c9e356c5ee 100644 --- a/modules/nf-core/picard/collectrnaseqmetrics/environment.yml +++ b/modules/nf-core/picard/collectrnaseqmetrics/environment.yml @@ -1,3 +1,4 @@ +name: picard_collectrnaseqmetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/collectwgsmetrics/environment.yml b/modules/nf-core/picard/collectwgsmetrics/environment.yml index 5dc98daf52e..8adda4914c4 100644 --- a/modules/nf-core/picard/collectwgsmetrics/environment.yml +++ b/modules/nf-core/picard/collectwgsmetrics/environment.yml @@ -1,3 +1,4 @@ +name: picard_collectwgsmetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/createsequencedictionary/environment.yml b/modules/nf-core/picard/createsequencedictionary/environment.yml index be923a322f6..c2883dd3a0e 100644 --- a/modules/nf-core/picard/createsequencedictionary/environment.yml +++ b/modules/nf-core/picard/createsequencedictionary/environment.yml @@ -1,3 +1,4 @@ +name: picard_createsequencedictionary channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/crosscheckfingerprints/environment.yml b/modules/nf-core/picard/crosscheckfingerprints/environment.yml index be923a322f6..15a2a79e054 100644 --- a/modules/nf-core/picard/crosscheckfingerprints/environment.yml +++ b/modules/nf-core/picard/crosscheckfingerprints/environment.yml @@ -1,3 +1,4 @@ +name: picard_crosscheckfingerprints channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/fastqtosam/environment.yml b/modules/nf-core/picard/fastqtosam/environment.yml index be923a322f6..8138a69d4db 100644 --- a/modules/nf-core/picard/fastqtosam/environment.yml +++ b/modules/nf-core/picard/fastqtosam/environment.yml @@ -1,3 +1,4 @@ +name: picard_fastqtosam channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/filtersamreads/environment.yml b/modules/nf-core/picard/filtersamreads/environment.yml index be923a322f6..44f2de5dcec 100644 --- a/modules/nf-core/picard/filtersamreads/environment.yml +++ b/modules/nf-core/picard/filtersamreads/environment.yml @@ -1,3 +1,4 @@ +name: picard_filtersamreads channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/fixmateinformation/environment.yml b/modules/nf-core/picard/fixmateinformation/environment.yml index be923a322f6..c88f1a187cc 100644 --- a/modules/nf-core/picard/fixmateinformation/environment.yml +++ b/modules/nf-core/picard/fixmateinformation/environment.yml @@ -1,3 +1,4 @@ +name: picard_fixmateinformation channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/liftovervcf/environment.yml b/modules/nf-core/picard/liftovervcf/environment.yml index be923a322f6..ffb4b224f2c 100644 --- a/modules/nf-core/picard/liftovervcf/environment.yml +++ b/modules/nf-core/picard/liftovervcf/environment.yml @@ -1,3 +1,4 @@ +name: picard_liftovervcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/markduplicates/environment.yml b/modules/nf-core/picard/markduplicates/environment.yml index be923a322f6..4db41cb0272 100644 --- a/modules/nf-core/picard/markduplicates/environment.yml +++ b/modules/nf-core/picard/markduplicates/environment.yml @@ -1,3 +1,4 @@ +name: picard_markduplicates channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/mergesamfiles/environment.yml b/modules/nf-core/picard/mergesamfiles/environment.yml index be923a322f6..bd74fbf93e6 100644 --- a/modules/nf-core/picard/mergesamfiles/environment.yml +++ b/modules/nf-core/picard/mergesamfiles/environment.yml @@ -1,3 +1,4 @@ +name: picard_mergesamfiles channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/renamesampleinvcf/environment.yml b/modules/nf-core/picard/renamesampleinvcf/environment.yml index be923a322f6..89d345d3ffb 100644 --- a/modules/nf-core/picard/renamesampleinvcf/environment.yml +++ b/modules/nf-core/picard/renamesampleinvcf/environment.yml @@ -1,3 +1,4 @@ +name: picard_renamesampleinvcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/scatterintervalsbyns/environment.yml b/modules/nf-core/picard/scatterintervalsbyns/environment.yml index be923a322f6..89c68ff2670 100644 --- a/modules/nf-core/picard/scatterintervalsbyns/environment.yml +++ b/modules/nf-core/picard/scatterintervalsbyns/environment.yml @@ -1,3 +1,4 @@ +name: picard_scatterintervalsbyns channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/sortsam/environment.yml b/modules/nf-core/picard/sortsam/environment.yml index be923a322f6..f1425a20765 100644 --- a/modules/nf-core/picard/sortsam/environment.yml +++ b/modules/nf-core/picard/sortsam/environment.yml @@ -1,3 +1,4 @@ +name: picard_sortsam channels: - conda-forge - bioconda diff --git a/modules/nf-core/picard/sortvcf/environment.yml b/modules/nf-core/picard/sortvcf/environment.yml index be923a322f6..feea5a243f4 100644 --- a/modules/nf-core/picard/sortvcf/environment.yml +++ b/modules/nf-core/picard/sortvcf/environment.yml @@ -1,3 +1,4 @@ +name: picard_sortvcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/pilon/environment.yml b/modules/nf-core/pilon/environment.yml index 2e8e3885a84..f38ef8c30a2 100644 --- a/modules/nf-core/pilon/environment.yml +++ b/modules/nf-core/pilon/environment.yml @@ -1,3 +1,4 @@ +name: pilon channels: - conda-forge - bioconda diff --git a/modules/nf-core/pindel/pindel/environment.yml b/modules/nf-core/pindel/pindel/environment.yml index 31f61007b78..262d5bf85f9 100644 --- a/modules/nf-core/pindel/pindel/environment.yml +++ b/modules/nf-core/pindel/pindel/environment.yml @@ -1,3 +1,4 @@ +name: pindel_pindel channels: - conda-forge - bioconda diff --git a/modules/nf-core/pints/caller/environment.yml b/modules/nf-core/pints/caller/environment.yml index 6a51b085427..71a5c98166e 100644 --- a/modules/nf-core/pints/caller/environment.yml +++ b/modules/nf-core/pints/caller/environment.yml @@ -1,3 +1,4 @@ +name: pints_caller channels: - conda-forge - bioconda diff --git a/modules/nf-core/pirate/environment.yml b/modules/nf-core/pirate/environment.yml index ddb20f9d4de..c321887d5c0 100644 --- a/modules/nf-core/pirate/environment.yml +++ b/modules/nf-core/pirate/environment.yml @@ -1,3 +1,4 @@ +name: pirate channels: - conda-forge - bioconda diff --git a/modules/nf-core/plasmidfinder/environment.yml b/modules/nf-core/plasmidfinder/environment.yml index 58edd42430f..c95be21364b 100644 --- a/modules/nf-core/plasmidfinder/environment.yml +++ b/modules/nf-core/plasmidfinder/environment.yml @@ -1,3 +1,4 @@ +name: plasmidfinder channels: - conda-forge - bioconda diff --git a/modules/nf-core/plasmidid/environment.yml b/modules/nf-core/plasmidid/environment.yml index 74e5e437a6b..1eda21d59f9 100644 --- a/modules/nf-core/plasmidid/environment.yml +++ b/modules/nf-core/plasmidid/environment.yml @@ -1,3 +1,4 @@ +name: plasmidid channels: - conda-forge - bioconda diff --git a/modules/nf-core/platypus/environment.yml b/modules/nf-core/platypus/environment.yml index 14ef1a46dfa..9eb0ff89d5a 100644 --- a/modules/nf-core/platypus/environment.yml +++ b/modules/nf-core/platypus/environment.yml @@ -1,3 +1,4 @@ +name: platypus channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/bcf/environment.yml b/modules/nf-core/plink/bcf/environment.yml index 349ec3943dd..a929846afd7 100644 --- a/modules/nf-core/plink/bcf/environment.yml +++ b/modules/nf-core/plink/bcf/environment.yml @@ -1,3 +1,4 @@ +name: plink_bcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/exclude/environment.yml b/modules/nf-core/plink/exclude/environment.yml index 349ec3943dd..0a545956ec3 100644 --- a/modules/nf-core/plink/exclude/environment.yml +++ b/modules/nf-core/plink/exclude/environment.yml @@ -1,3 +1,4 @@ +name: plink_exclude channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/extract/environment.yml b/modules/nf-core/plink/extract/environment.yml index 349ec3943dd..a43207f0ec8 100644 --- a/modules/nf-core/plink/extract/environment.yml +++ b/modules/nf-core/plink/extract/environment.yml @@ -1,3 +1,4 @@ +name: plink_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/indep/environment.yml b/modules/nf-core/plink/indep/environment.yml index 349ec3943dd..7514d8478d5 100644 --- a/modules/nf-core/plink/indep/environment.yml +++ b/modules/nf-core/plink/indep/environment.yml @@ -1,3 +1,4 @@ +name: plink_indep channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/indeppairwise/environment.yml b/modules/nf-core/plink/indeppairwise/environment.yml index 349ec3943dd..d91bff44135 100644 --- a/modules/nf-core/plink/indeppairwise/environment.yml +++ b/modules/nf-core/plink/indeppairwise/environment.yml @@ -1,3 +1,4 @@ +name: plink_indeppairwise channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/recode/environment.yml b/modules/nf-core/plink/recode/environment.yml index 349ec3943dd..e1ea7acb6fe 100644 --- a/modules/nf-core/plink/recode/environment.yml +++ b/modules/nf-core/plink/recode/environment.yml @@ -1,3 +1,4 @@ +name: plink_recode channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink/vcf/environment.yml b/modules/nf-core/plink/vcf/environment.yml index 349ec3943dd..08b151adec4 100644 --- a/modules/nf-core/plink/vcf/environment.yml +++ b/modules/nf-core/plink/vcf/environment.yml @@ -1,3 +1,4 @@ +name: plink_vcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink2/extract/environment.yml b/modules/nf-core/plink2/extract/environment.yml index 0dabb7bfed0..3664377ccee 100644 --- a/modules/nf-core/plink2/extract/environment.yml +++ b/modules/nf-core/plink2/extract/environment.yml @@ -1,3 +1,4 @@ +name: plink2_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink2/score/environment.yml b/modules/nf-core/plink2/score/environment.yml index 0dabb7bfed0..56fca34bfac 100644 --- a/modules/nf-core/plink2/score/environment.yml +++ b/modules/nf-core/plink2/score/environment.yml @@ -1,3 +1,4 @@ +name: plink2_score channels: - conda-forge - bioconda diff --git a/modules/nf-core/plink2/vcf/environment.yml b/modules/nf-core/plink2/vcf/environment.yml index 0dabb7bfed0..2d062228f79 100644 --- a/modules/nf-core/plink2/vcf/environment.yml +++ b/modules/nf-core/plink2/vcf/environment.yml @@ -1,3 +1,4 @@ +name: plink2_vcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/pmdtools/filter/environment.yml b/modules/nf-core/pmdtools/filter/environment.yml index fd6bf5ff8ef..591722d7bc1 100644 --- a/modules/nf-core/pmdtools/filter/environment.yml +++ b/modules/nf-core/pmdtools/filter/environment.yml @@ -1,3 +1,4 @@ +name: pmdtools_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/pneumocat/environment.yml b/modules/nf-core/pneumocat/environment.yml index f6e7f3369be..30d01766ad6 100644 --- a/modules/nf-core/pneumocat/environment.yml +++ b/modules/nf-core/pneumocat/environment.yml @@ -1,3 +1,4 @@ +name: pneumocat channels: - conda-forge - bioconda diff --git a/modules/nf-core/porechop/abi/environment.yml b/modules/nf-core/porechop/abi/environment.yml index ba0ae121f75..f9beb5c2483 100644 --- a/modules/nf-core/porechop/abi/environment.yml +++ b/modules/nf-core/porechop/abi/environment.yml @@ -1,3 +1,4 @@ +name: porechop_abi channels: - conda-forge - bioconda diff --git a/modules/nf-core/porechop/porechop/environment.yml b/modules/nf-core/porechop/porechop/environment.yml index 605f51c917a..28b67c16d0b 100644 --- a/modules/nf-core/porechop/porechop/environment.yml +++ b/modules/nf-core/porechop/porechop/environment.yml @@ -1,3 +1,4 @@ +name: porechop_porechop channels: - conda-forge - bioconda diff --git a/modules/nf-core/preseq/ccurve/environment.yml b/modules/nf-core/preseq/ccurve/environment.yml index 8a41ae10140..d05e5ff3184 100644 --- a/modules/nf-core/preseq/ccurve/environment.yml +++ b/modules/nf-core/preseq/ccurve/environment.yml @@ -1,3 +1,4 @@ +name: preseq_ccurve channels: - conda-forge - bioconda diff --git a/modules/nf-core/preseq/lcextrap/environment.yml b/modules/nf-core/preseq/lcextrap/environment.yml index 8a41ae10140..57b8b9c671a 100644 --- a/modules/nf-core/preseq/lcextrap/environment.yml +++ b/modules/nf-core/preseq/lcextrap/environment.yml @@ -1,3 +1,4 @@ +name: preseq_lcextrap channels: - conda-forge - bioconda diff --git a/modules/nf-core/pretextmap/environment.yml b/modules/nf-core/pretextmap/environment.yml index bca4e2dd339..1b1b90b7fe8 100644 --- a/modules/nf-core/pretextmap/environment.yml +++ b/modules/nf-core/pretextmap/environment.yml @@ -1,3 +1,4 @@ +name: pretextmap channels: - conda-forge - bioconda diff --git a/modules/nf-core/pretextsnapshot/environment.yml b/modules/nf-core/pretextsnapshot/environment.yml index 906d3850d7b..812c59753fd 100644 --- a/modules/nf-core/pretextsnapshot/environment.yml +++ b/modules/nf-core/pretextsnapshot/environment.yml @@ -1,3 +1,4 @@ +name: pretextsnapshot channels: - conda-forge - bioconda diff --git a/modules/nf-core/prinseqplusplus/environment.yml b/modules/nf-core/prinseqplusplus/environment.yml index 1c4d2c5d731..5ab5a12663c 100644 --- a/modules/nf-core/prinseqplusplus/environment.yml +++ b/modules/nf-core/prinseqplusplus/environment.yml @@ -1,3 +1,4 @@ +name: prinseqplusplus channels: - conda-forge - bioconda diff --git a/modules/nf-core/prodigal/environment.yml b/modules/nf-core/prodigal/environment.yml index 05ca3ba0a83..85746534580 100644 --- a/modules/nf-core/prodigal/environment.yml +++ b/modules/nf-core/prodigal/environment.yml @@ -1,3 +1,4 @@ +name: prodigal channels: - conda-forge - bioconda diff --git a/modules/nf-core/prokka/environment.yml b/modules/nf-core/prokka/environment.yml index b59d6c32971..d7c44d5a39e 100644 --- a/modules/nf-core/prokka/environment.yml +++ b/modules/nf-core/prokka/environment.yml @@ -1,3 +1,4 @@ +name: prokka channels: - conda-forge - bioconda diff --git a/modules/nf-core/propr/logratio/environment.yml b/modules/nf-core/propr/logratio/environment.yml index 3c4c3991ae3..61e57321125 100644 --- a/modules/nf-core/propr/logratio/environment.yml +++ b/modules/nf-core/propr/logratio/environment.yml @@ -1,3 +1,4 @@ +name: propr_logratio channels: - conda-forge - bioconda diff --git a/modules/nf-core/propr/propd/environment.yml b/modules/nf-core/propr/propd/environment.yml index 3c4c3991ae3..226ca3780a1 100644 --- a/modules/nf-core/propr/propd/environment.yml +++ b/modules/nf-core/propr/propd/environment.yml @@ -1,3 +1,4 @@ +name: propr_propd channels: - conda-forge - bioconda diff --git a/modules/nf-core/proteus/readproteingroups/environment.yml b/modules/nf-core/proteus/readproteingroups/environment.yml index bd44f38dbe4..d72a4a88805 100644 --- a/modules/nf-core/proteus/readproteingroups/environment.yml +++ b/modules/nf-core/proteus/readproteingroups/environment.yml @@ -1,3 +1,4 @@ +name: proteus_readproteingroups channels: - conda-forge - bioconda diff --git a/modules/nf-core/pureclip/environment.yml b/modules/nf-core/pureclip/environment.yml index 103d27d904a..ff4f455fcc5 100644 --- a/modules/nf-core/pureclip/environment.yml +++ b/modules/nf-core/pureclip/environment.yml @@ -1,3 +1,4 @@ +name: pureclip channels: - conda-forge - bioconda diff --git a/modules/nf-core/purecn/coverage/environment.yml b/modules/nf-core/purecn/coverage/environment.yml index a3322994643..12a6aff2af3 100644 --- a/modules/nf-core/purecn/coverage/environment.yml +++ b/modules/nf-core/purecn/coverage/environment.yml @@ -1,3 +1,4 @@ +name: purecn_coverage channels: - conda-forge - bioconda diff --git a/modules/nf-core/purecn/intervalfile/environment.yml b/modules/nf-core/purecn/intervalfile/environment.yml index a3322994643..6caebe5ad3d 100644 --- a/modules/nf-core/purecn/intervalfile/environment.yml +++ b/modules/nf-core/purecn/intervalfile/environment.yml @@ -1,3 +1,4 @@ +name: purecn_intervalfile channels: - conda-forge - bioconda diff --git a/modules/nf-core/purecn/normaldb/environment.yml b/modules/nf-core/purecn/normaldb/environment.yml index a3322994643..c37d209ac8f 100644 --- a/modules/nf-core/purecn/normaldb/environment.yml +++ b/modules/nf-core/purecn/normaldb/environment.yml @@ -1,3 +1,4 @@ +name: purecn_normaldb channels: - conda-forge - bioconda diff --git a/modules/nf-core/purecn/run/environment.yml b/modules/nf-core/purecn/run/environment.yml index a3322994643..04c48aecf80 100644 --- a/modules/nf-core/purecn/run/environment.yml +++ b/modules/nf-core/purecn/run/environment.yml @@ -1,3 +1,4 @@ +name: purecn_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/calcuts/environment.yml b/modules/nf-core/purgedups/calcuts/environment.yml index bf6c2441161..acfed4ba3b5 100644 --- a/modules/nf-core/purgedups/calcuts/environment.yml +++ b/modules/nf-core/purgedups/calcuts/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_calcuts channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/getseqs/environment.yml b/modules/nf-core/purgedups/getseqs/environment.yml index bf6c2441161..60075d540c4 100644 --- a/modules/nf-core/purgedups/getseqs/environment.yml +++ b/modules/nf-core/purgedups/getseqs/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_getseqs channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/histplot/environment.yml b/modules/nf-core/purgedups/histplot/environment.yml index bf6c2441161..29749d6b548 100644 --- a/modules/nf-core/purgedups/histplot/environment.yml +++ b/modules/nf-core/purgedups/histplot/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_histplot channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/pbcstat/environment.yml b/modules/nf-core/purgedups/pbcstat/environment.yml index bf6c2441161..e8b5a325b0c 100644 --- a/modules/nf-core/purgedups/pbcstat/environment.yml +++ b/modules/nf-core/purgedups/pbcstat/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_pbcstat channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/purgedups/environment.yml b/modules/nf-core/purgedups/purgedups/environment.yml index bf6c2441161..2a58463958a 100644 --- a/modules/nf-core/purgedups/purgedups/environment.yml +++ b/modules/nf-core/purgedups/purgedups/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_purgedups channels: - conda-forge - bioconda diff --git a/modules/nf-core/purgedups/splitfa/environment.yml b/modules/nf-core/purgedups/splitfa/environment.yml index bf6c2441161..b70d75a1e8a 100644 --- a/modules/nf-core/purgedups/splitfa/environment.yml +++ b/modules/nf-core/purgedups/splitfa/environment.yml @@ -1,3 +1,4 @@ +name: purgedups_splitfa channels: - conda-forge - bioconda diff --git a/modules/nf-core/pycoqc/environment.yml b/modules/nf-core/pycoqc/environment.yml index 87535bbfe09..c2a3a4d100b 100644 --- a/modules/nf-core/pycoqc/environment.yml +++ b/modules/nf-core/pycoqc/environment.yml @@ -1,3 +1,4 @@ +name: pycoqc channels: - conda-forge - bioconda diff --git a/modules/nf-core/pydamage/analyze/environment.yml b/modules/nf-core/pydamage/analyze/environment.yml index 80caa768da8..ed8a58ad4ec 100644 --- a/modules/nf-core/pydamage/analyze/environment.yml +++ b/modules/nf-core/pydamage/analyze/environment.yml @@ -1,3 +1,4 @@ +name: pydamage_analyze channels: - conda-forge - bioconda diff --git a/modules/nf-core/pydamage/filter/environment.yml b/modules/nf-core/pydamage/filter/environment.yml index 80caa768da8..83bafd69001 100644 --- a/modules/nf-core/pydamage/filter/environment.yml +++ b/modules/nf-core/pydamage/filter/environment.yml @@ -1,3 +1,4 @@ +name: pydamage_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/pyrodigal/environment.yml b/modules/nf-core/pyrodigal/environment.yml index 5675b387d90..8d3107b9ddf 100644 --- a/modules/nf-core/pyrodigal/environment.yml +++ b/modules/nf-core/pyrodigal/environment.yml @@ -1,3 +1,4 @@ +name: pyrodigal channels: - conda-forge - bioconda diff --git a/modules/nf-core/qcat/environment.yml b/modules/nf-core/qcat/environment.yml index 3a473a0d469..b1f79884ae9 100644 --- a/modules/nf-core/qcat/environment.yml +++ b/modules/nf-core/qcat/environment.yml @@ -1,3 +1,4 @@ +name: qcat channels: - conda-forge - bioconda diff --git a/modules/nf-core/qualimap/bamqc/environment.yml b/modules/nf-core/qualimap/bamqc/environment.yml index 4858fcca132..8e46b0293fc 100644 --- a/modules/nf-core/qualimap/bamqc/environment.yml +++ b/modules/nf-core/qualimap/bamqc/environment.yml @@ -1,3 +1,4 @@ +name: qualimap_bamqc channels: - conda-forge - bioconda diff --git a/modules/nf-core/qualimap/bamqccram/environment.yml b/modules/nf-core/qualimap/bamqccram/environment.yml index 008bc5dcbcc..b3d0dfd7275 100644 --- a/modules/nf-core/qualimap/bamqccram/environment.yml +++ b/modules/nf-core/qualimap/bamqccram/environment.yml @@ -1,3 +1,4 @@ +name: qualimap_bamqccram channels: - conda-forge - bioconda diff --git a/modules/nf-core/qualimap/rnaseq/environment.yml b/modules/nf-core/qualimap/rnaseq/environment.yml index 4858fcca132..67731e3fd7e 100644 --- a/modules/nf-core/qualimap/rnaseq/environment.yml +++ b/modules/nf-core/qualimap/rnaseq/environment.yml @@ -1,3 +1,4 @@ +name: qualimap_rnaseq channels: - conda-forge - bioconda diff --git a/modules/nf-core/quast/environment.yml b/modules/nf-core/quast/environment.yml index 147c086edb8..0f9e3079f1c 100644 --- a/modules/nf-core/quast/environment.yml +++ b/modules/nf-core/quast/environment.yml @@ -1,3 +1,4 @@ +name: quast channels: - conda-forge - bioconda diff --git a/modules/nf-core/quilt/quilt/environment.yml b/modules/nf-core/quilt/quilt/environment.yml index 787367e60f5..9872e81955e 100644 --- a/modules/nf-core/quilt/quilt/environment.yml +++ b/modules/nf-core/quilt/quilt/environment.yml @@ -1,3 +1,4 @@ +name: quilt_quilt channels: - conda-forge - bioconda diff --git a/modules/nf-core/racon/environment.yml b/modules/nf-core/racon/environment.yml index e5cd0b82c11..abc5d78431a 100644 --- a/modules/nf-core/racon/environment.yml +++ b/modules/nf-core/racon/environment.yml @@ -1,3 +1,4 @@ +name: racon channels: - conda-forge - bioconda diff --git a/modules/nf-core/rapidnj/environment.yml b/modules/nf-core/rapidnj/environment.yml index f9b0c6c8a2a..060c087e056 100644 --- a/modules/nf-core/rapidnj/environment.yml +++ b/modules/nf-core/rapidnj/environment.yml @@ -1,3 +1,4 @@ +name: rapidnj channels: - conda-forge - bioconda diff --git a/modules/nf-core/rasusa/environment.yml b/modules/nf-core/rasusa/environment.yml index 82eec9b674e..c0d67ecc302 100644 --- a/modules/nf-core/rasusa/environment.yml +++ b/modules/nf-core/rasusa/environment.yml @@ -1,3 +1,4 @@ +name: rasusa channels: - conda-forge - bioconda diff --git a/modules/nf-core/raven/environment.yml b/modules/nf-core/raven/environment.yml index 58c5776e0ec..395d95cb4c0 100644 --- a/modules/nf-core/raven/environment.yml +++ b/modules/nf-core/raven/environment.yml @@ -1,3 +1,4 @@ +name: raven channels: - conda-forge - bioconda diff --git a/modules/nf-core/raxmlng/environment.yml b/modules/nf-core/raxmlng/environment.yml index a11e7772510..e597d7f4bea 100644 --- a/modules/nf-core/raxmlng/environment.yml +++ b/modules/nf-core/raxmlng/environment.yml @@ -1,3 +1,4 @@ +name: raxmlng channels: - conda-forge - bioconda diff --git a/modules/nf-core/rgi/main/environment.yml b/modules/nf-core/rgi/main/environment.yml index 0457b82b1c1..f4eeef9510e 100644 --- a/modules/nf-core/rgi/main/environment.yml +++ b/modules/nf-core/rgi/main/environment.yml @@ -1,3 +1,4 @@ +name: rgi_main channels: - conda-forge - bioconda diff --git a/modules/nf-core/rhocall/annotate/environment.yml b/modules/nf-core/rhocall/annotate/environment.yml index a0c6ed74028..5a00600fdc6 100644 --- a/modules/nf-core/rhocall/annotate/environment.yml +++ b/modules/nf-core/rhocall/annotate/environment.yml @@ -1,3 +1,4 @@ +name: rhocall_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/rmarkdownnotebook/environment.yml b/modules/nf-core/rmarkdownnotebook/environment.yml index 996600b5b56..c7fe8cf2aa5 100644 --- a/modules/nf-core/rmarkdownnotebook/environment.yml +++ b/modules/nf-core/rmarkdownnotebook/environment.yml @@ -1,3 +1,4 @@ +name: rmarkdownnotebook channels: - conda-forge - bioconda diff --git a/modules/nf-core/roary/environment.yml b/modules/nf-core/roary/environment.yml index 884329918c1..5ec37900641 100644 --- a/modules/nf-core/roary/environment.yml +++ b/modules/nf-core/roary/environment.yml @@ -1,3 +1,4 @@ +name: roary channels: - conda-forge - bioconda diff --git a/modules/nf-core/rsem/calculateexpression/environment.yml b/modules/nf-core/rsem/calculateexpression/environment.yml index 727b15356c9..b811fa6fe84 100644 --- a/modules/nf-core/rsem/calculateexpression/environment.yml +++ b/modules/nf-core/rsem/calculateexpression/environment.yml @@ -1,3 +1,4 @@ +name: rsem_calculateexpression channels: - conda-forge - bioconda diff --git a/modules/nf-core/rsem/preparereference/environment.yml b/modules/nf-core/rsem/preparereference/environment.yml index 727b15356c9..c80e69106f9 100644 --- a/modules/nf-core/rsem/preparereference/environment.yml +++ b/modules/nf-core/rsem/preparereference/environment.yml @@ -1,3 +1,4 @@ +name: rsem_preparereference channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/bamstat/environment.yml b/modules/nf-core/rseqc/bamstat/environment.yml index c91f967861c..bf0bf0829b1 100644 --- a/modules/nf-core/rseqc/bamstat/environment.yml +++ b/modules/nf-core/rseqc/bamstat/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_bamstat channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/inferexperiment/environment.yml b/modules/nf-core/rseqc/inferexperiment/environment.yml index c91f967861c..1d3936f4e6e 100644 --- a/modules/nf-core/rseqc/inferexperiment/environment.yml +++ b/modules/nf-core/rseqc/inferexperiment/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_inferexperiment channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/innerdistance/environment.yml b/modules/nf-core/rseqc/innerdistance/environment.yml index c91f967861c..bb61cce248f 100644 --- a/modules/nf-core/rseqc/innerdistance/environment.yml +++ b/modules/nf-core/rseqc/innerdistance/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_innerdistance channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/junctionannotation/environment.yml b/modules/nf-core/rseqc/junctionannotation/environment.yml index c91f967861c..105ea25ea3a 100644 --- a/modules/nf-core/rseqc/junctionannotation/environment.yml +++ b/modules/nf-core/rseqc/junctionannotation/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_junctionannotation channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/junctionsaturation/environment.yml b/modules/nf-core/rseqc/junctionsaturation/environment.yml index c91f967861c..78ffd06adaa 100644 --- a/modules/nf-core/rseqc/junctionsaturation/environment.yml +++ b/modules/nf-core/rseqc/junctionsaturation/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_junctionsaturation channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/readdistribution/environment.yml b/modules/nf-core/rseqc/readdistribution/environment.yml index c91f967861c..a20fef74e5a 100644 --- a/modules/nf-core/rseqc/readdistribution/environment.yml +++ b/modules/nf-core/rseqc/readdistribution/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_readdistribution channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/readduplication/environment.yml b/modules/nf-core/rseqc/readduplication/environment.yml index c91f967861c..bba52d8fa30 100644 --- a/modules/nf-core/rseqc/readduplication/environment.yml +++ b/modules/nf-core/rseqc/readduplication/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_readduplication channels: - conda-forge - bioconda diff --git a/modules/nf-core/rseqc/tin/environment.yml b/modules/nf-core/rseqc/tin/environment.yml index c91f967861c..48b7efa537a 100644 --- a/modules/nf-core/rseqc/tin/environment.yml +++ b/modules/nf-core/rseqc/tin/environment.yml @@ -1,3 +1,4 @@ +name: rseqc_tin channels: - conda-forge - bioconda diff --git a/modules/nf-core/rtgtools/format/environment.yml b/modules/nf-core/rtgtools/format/environment.yml index 50d7eb71429..15b3df5be04 100644 --- a/modules/nf-core/rtgtools/format/environment.yml +++ b/modules/nf-core/rtgtools/format/environment.yml @@ -1,3 +1,4 @@ +name: rtgtools_format channels: - conda-forge - bioconda diff --git a/modules/nf-core/rtgtools/pedfilter/environment.yml b/modules/nf-core/rtgtools/pedfilter/environment.yml index 50d7eb71429..62fcaa1cccf 100644 --- a/modules/nf-core/rtgtools/pedfilter/environment.yml +++ b/modules/nf-core/rtgtools/pedfilter/environment.yml @@ -1,3 +1,4 @@ +name: rtgtools_pedfilter channels: - conda-forge - bioconda diff --git a/modules/nf-core/rtgtools/rocplot/environment.yml b/modules/nf-core/rtgtools/rocplot/environment.yml index 50d7eb71429..093462a56fe 100644 --- a/modules/nf-core/rtgtools/rocplot/environment.yml +++ b/modules/nf-core/rtgtools/rocplot/environment.yml @@ -1,3 +1,4 @@ +name: rtgtools_rocplot channels: - conda-forge - bioconda diff --git a/modules/nf-core/rtgtools/vcfeval/environment.yml b/modules/nf-core/rtgtools/vcfeval/environment.yml index 50d7eb71429..e3c64996737 100644 --- a/modules/nf-core/rtgtools/vcfeval/environment.yml +++ b/modules/nf-core/rtgtools/vcfeval/environment.yml @@ -1,3 +1,4 @@ +name: rtgtools_vcfeval channels: - conda-forge - bioconda diff --git a/modules/nf-core/salmon/index/environment.yml b/modules/nf-core/salmon/index/environment.yml index a0519dd2997..a6607d964f3 100644 --- a/modules/nf-core/salmon/index/environment.yml +++ b/modules/nf-core/salmon/index/environment.yml @@ -1,3 +1,4 @@ +name: salmon_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/salmon/quant/environment.yml b/modules/nf-core/salmon/quant/environment.yml index a0519dd2997..86266724196 100644 --- a/modules/nf-core/salmon/quant/environment.yml +++ b/modules/nf-core/salmon/quant/environment.yml @@ -1,3 +1,4 @@ +name: salmon_quant channels: - conda-forge - bioconda diff --git a/modules/nf-core/salsa2/environment.yml b/modules/nf-core/salsa2/environment.yml index afca3469cb8..bfbaa64ff09 100644 --- a/modules/nf-core/salsa2/environment.yml +++ b/modules/nf-core/salsa2/environment.yml @@ -1,3 +1,4 @@ +name: salsa2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/sam2lca/analyze/environment.yml b/modules/nf-core/sam2lca/analyze/environment.yml index 1a4d24d0a3d..d1b8eefd455 100644 --- a/modules/nf-core/sam2lca/analyze/environment.yml +++ b/modules/nf-core/sam2lca/analyze/environment.yml @@ -1,3 +1,4 @@ +name: sam2lca_analyze channels: - conda-forge - bioconda diff --git a/modules/nf-core/sambamba/flagstat/environment.yml b/modules/nf-core/sambamba/flagstat/environment.yml index ff4c10552d2..80b3b146fcf 100644 --- a/modules/nf-core/sambamba/flagstat/environment.yml +++ b/modules/nf-core/sambamba/flagstat/environment.yml @@ -1,3 +1,4 @@ +name: sambamba_flagstat channels: - conda-forge - bioconda diff --git a/modules/nf-core/sambamba/markdup/environment.yml b/modules/nf-core/sambamba/markdup/environment.yml index ff4c10552d2..6bb20af7d9d 100644 --- a/modules/nf-core/sambamba/markdup/environment.yml +++ b/modules/nf-core/sambamba/markdup/environment.yml @@ -1,3 +1,4 @@ +name: sambamba_markdup channels: - conda-forge - bioconda diff --git a/modules/nf-core/samblaster/environment.yml b/modules/nf-core/samblaster/environment.yml index 3a79aaf8ea1..f956283ec0c 100644 --- a/modules/nf-core/samblaster/environment.yml +++ b/modules/nf-core/samblaster/environment.yml @@ -1,3 +1,4 @@ +name: samblaster channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/ampliconclip/environment.yml b/modules/nf-core/samtools/ampliconclip/environment.yml index 04c82f14236..f505a740669 100644 --- a/modules/nf-core/samtools/ampliconclip/environment.yml +++ b/modules/nf-core/samtools/ampliconclip/environment.yml @@ -1,3 +1,4 @@ +name: samtools_ampliconclip channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/bam2fq/environment.yml b/modules/nf-core/samtools/bam2fq/environment.yml index 04c82f14236..b59ea8e050f 100644 --- a/modules/nf-core/samtools/bam2fq/environment.yml +++ b/modules/nf-core/samtools/bam2fq/environment.yml @@ -1,3 +1,4 @@ +name: samtools_bam2fq channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/calmd/environment.yml b/modules/nf-core/samtools/calmd/environment.yml index 04c82f14236..f587e3a5eb8 100644 --- a/modules/nf-core/samtools/calmd/environment.yml +++ b/modules/nf-core/samtools/calmd/environment.yml @@ -1,3 +1,4 @@ +name: samtools_calmd channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/cat/environment.yml b/modules/nf-core/samtools/cat/environment.yml index 04c82f14236..80da1cf8ca2 100644 --- a/modules/nf-core/samtools/cat/environment.yml +++ b/modules/nf-core/samtools/cat/environment.yml @@ -1,3 +1,4 @@ +name: samtools_cat channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/collate/environment.yml b/modules/nf-core/samtools/collate/environment.yml index 04c82f14236..0fb861b8fdc 100644 --- a/modules/nf-core/samtools/collate/environment.yml +++ b/modules/nf-core/samtools/collate/environment.yml @@ -1,3 +1,4 @@ +name: samtools_collate channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/collatefastq/environment.yml b/modules/nf-core/samtools/collatefastq/environment.yml index 04c82f14236..ec3faa9cdcd 100644 --- a/modules/nf-core/samtools/collatefastq/environment.yml +++ b/modules/nf-core/samtools/collatefastq/environment.yml @@ -1,3 +1,4 @@ +name: samtools_collatefastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/convert/environment.yml b/modules/nf-core/samtools/convert/environment.yml index 04c82f14236..b2150ad5076 100644 --- a/modules/nf-core/samtools/convert/environment.yml +++ b/modules/nf-core/samtools/convert/environment.yml @@ -1,3 +1,4 @@ +name: samtools_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/coverage/environment.yml b/modules/nf-core/samtools/coverage/environment.yml index 04c82f14236..d24349671b2 100644 --- a/modules/nf-core/samtools/coverage/environment.yml +++ b/modules/nf-core/samtools/coverage/environment.yml @@ -1,3 +1,4 @@ +name: samtools_coverage channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/depth/environment.yml b/modules/nf-core/samtools/depth/environment.yml index 04c82f14236..957049e72a5 100644 --- a/modules/nf-core/samtools/depth/environment.yml +++ b/modules/nf-core/samtools/depth/environment.yml @@ -1,3 +1,4 @@ +name: samtools_depth channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/dict/environment.yml b/modules/nf-core/samtools/dict/environment.yml index 04c82f14236..08aebb8a07c 100644 --- a/modules/nf-core/samtools/dict/environment.yml +++ b/modules/nf-core/samtools/dict/environment.yml @@ -1,3 +1,4 @@ +name: samtools_dict channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/faidx/environment.yml b/modules/nf-core/samtools/faidx/environment.yml index 04c82f14236..73badedb189 100644 --- a/modules/nf-core/samtools/faidx/environment.yml +++ b/modules/nf-core/samtools/faidx/environment.yml @@ -1,3 +1,4 @@ +name: samtools_faidx channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/fasta/environment.yml b/modules/nf-core/samtools/fasta/environment.yml index 04c82f14236..8a82f9ed676 100644 --- a/modules/nf-core/samtools/fasta/environment.yml +++ b/modules/nf-core/samtools/fasta/environment.yml @@ -1,3 +1,4 @@ +name: samtools_fasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/fastq/environment.yml b/modules/nf-core/samtools/fastq/environment.yml index 04c82f14236..1b7124d4e86 100644 --- a/modules/nf-core/samtools/fastq/environment.yml +++ b/modules/nf-core/samtools/fastq/environment.yml @@ -1,3 +1,4 @@ +name: samtools_fastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/fixmate/environment.yml b/modules/nf-core/samtools/fixmate/environment.yml index 04c82f14236..5f784f0323e 100644 --- a/modules/nf-core/samtools/fixmate/environment.yml +++ b/modules/nf-core/samtools/fixmate/environment.yml @@ -1,3 +1,4 @@ +name: samtools_fixmate channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/flagstat/environment.yml b/modules/nf-core/samtools/flagstat/environment.yml index 04c82f14236..22bdb5cf5f4 100644 --- a/modules/nf-core/samtools/flagstat/environment.yml +++ b/modules/nf-core/samtools/flagstat/environment.yml @@ -1,3 +1,4 @@ +name: samtools_flagstat channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/getrg/environment.yml b/modules/nf-core/samtools/getrg/environment.yml index 04c82f14236..b5f96bcec27 100644 --- a/modules/nf-core/samtools/getrg/environment.yml +++ b/modules/nf-core/samtools/getrg/environment.yml @@ -1,3 +1,4 @@ +name: samtools_getrg channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/idxstats/environment.yml b/modules/nf-core/samtools/idxstats/environment.yml index 04c82f14236..89bd272f2dd 100644 --- a/modules/nf-core/samtools/idxstats/environment.yml +++ b/modules/nf-core/samtools/idxstats/environment.yml @@ -1,3 +1,4 @@ +name: samtools_idxstats channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/import/environment.yml b/modules/nf-core/samtools/import/environment.yml index 04c82f14236..0bdf28a66e0 100644 --- a/modules/nf-core/samtools/import/environment.yml +++ b/modules/nf-core/samtools/import/environment.yml @@ -1,3 +1,4 @@ +name: samtools_import channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/index/environment.yml b/modules/nf-core/samtools/index/environment.yml index 04c82f14236..3c6f95b25af 100644 --- a/modules/nf-core/samtools/index/environment.yml +++ b/modules/nf-core/samtools/index/environment.yml @@ -1,3 +1,4 @@ +name: samtools_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/markdup/environment.yml b/modules/nf-core/samtools/markdup/environment.yml index 04c82f14236..517ae80e484 100644 --- a/modules/nf-core/samtools/markdup/environment.yml +++ b/modules/nf-core/samtools/markdup/environment.yml @@ -1,3 +1,4 @@ +name: samtools_markdup channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/merge/environment.yml b/modules/nf-core/samtools/merge/environment.yml index 04c82f14236..0d437d8a88b 100644 --- a/modules/nf-core/samtools/merge/environment.yml +++ b/modules/nf-core/samtools/merge/environment.yml @@ -1,3 +1,4 @@ +name: samtools_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/mpileup/environment.yml b/modules/nf-core/samtools/mpileup/environment.yml index 04c82f14236..5f06050d19e 100644 --- a/modules/nf-core/samtools/mpileup/environment.yml +++ b/modules/nf-core/samtools/mpileup/environment.yml @@ -1,3 +1,4 @@ +name: samtools_mpileup channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/reheader/environment.yml b/modules/nf-core/samtools/reheader/environment.yml index 7f80e55ae67..0b14d92b59f 100644 --- a/modules/nf-core/samtools/reheader/environment.yml +++ b/modules/nf-core/samtools/reheader/environment.yml @@ -1,3 +1,4 @@ +name: samtools_reheader channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/sort/environment.yml b/modules/nf-core/samtools/sort/environment.yml index 04c82f14236..508659f025d 100644 --- a/modules/nf-core/samtools/sort/environment.yml +++ b/modules/nf-core/samtools/sort/environment.yml @@ -1,3 +1,4 @@ +name: samtools_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/stats/environment.yml b/modules/nf-core/samtools/stats/environment.yml index 04c82f14236..ed4e8961aff 100644 --- a/modules/nf-core/samtools/stats/environment.yml +++ b/modules/nf-core/samtools/stats/environment.yml @@ -1,3 +1,4 @@ +name: samtools_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/samtools/view/environment.yml b/modules/nf-core/samtools/view/environment.yml index 04c82f14236..141e7bd829c 100644 --- a/modules/nf-core/samtools/view/environment.yml +++ b/modules/nf-core/samtools/view/environment.yml @@ -1,3 +1,4 @@ +name: samtools_view channels: - conda-forge - bioconda diff --git a/modules/nf-core/scimap/mcmicro/environment.yml b/modules/nf-core/scimap/mcmicro/environment.yml index bcd3a8b1c63..db00aaa01f5 100644 --- a/modules/nf-core/scimap/mcmicro/environment.yml +++ b/modules/nf-core/scimap/mcmicro/environment.yml @@ -1,3 +1,4 @@ +name: scimap_mcmicro channels: - conda-forge - bioconda diff --git a/modules/nf-core/scoary/environment.yml b/modules/nf-core/scoary/environment.yml index 034f45f7301..06d40e4975c 100644 --- a/modules/nf-core/scoary/environment.yml +++ b/modules/nf-core/scoary/environment.yml @@ -1,3 +1,4 @@ +name: scoary channels: - conda-forge - bioconda diff --git a/modules/nf-core/scramble/clusteranalysis/environment.yml b/modules/nf-core/scramble/clusteranalysis/environment.yml index c566a226ed9..d36b0bff41c 100644 --- a/modules/nf-core/scramble/clusteranalysis/environment.yml +++ b/modules/nf-core/scramble/clusteranalysis/environment.yml @@ -1,3 +1,4 @@ +name: scramble_clusteranalysis channels: - conda-forge - bioconda diff --git a/modules/nf-core/scramble/clusteridentifier/environment.yml b/modules/nf-core/scramble/clusteridentifier/environment.yml index c566a226ed9..752de28349b 100644 --- a/modules/nf-core/scramble/clusteridentifier/environment.yml +++ b/modules/nf-core/scramble/clusteridentifier/environment.yml @@ -1,3 +1,4 @@ +name: scramble_clusteridentifier channels: - conda-forge - bioconda diff --git a/modules/nf-core/seacr/callpeak/environment.yml b/modules/nf-core/seacr/callpeak/environment.yml index a8a7759c3bc..faf6db6faeb 100644 --- a/modules/nf-core/seacr/callpeak/environment.yml +++ b/modules/nf-core/seacr/callpeak/environment.yml @@ -1,3 +1,4 @@ +name: seacr_callpeak channels: - conda-forge - bioconda diff --git a/modules/nf-core/segemehl/align/environment.yml b/modules/nf-core/segemehl/align/environment.yml index 36d4ce361bd..e7dbc66288e 100644 --- a/modules/nf-core/segemehl/align/environment.yml +++ b/modules/nf-core/segemehl/align/environment.yml @@ -1,3 +1,4 @@ +name: segemehl_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/segemehl/index/environment.yml b/modules/nf-core/segemehl/index/environment.yml index 36d4ce361bd..c06413305ab 100644 --- a/modules/nf-core/segemehl/index/environment.yml +++ b/modules/nf-core/segemehl/index/environment.yml @@ -1,3 +1,4 @@ +name: segemehl_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/semibin/singleeasybin/environment.yml b/modules/nf-core/semibin/singleeasybin/environment.yml index ec00cc3e2eb..261623bc5d1 100644 --- a/modules/nf-core/semibin/singleeasybin/environment.yml +++ b/modules/nf-core/semibin/singleeasybin/environment.yml @@ -1,3 +1,4 @@ +name: semibin_singleeasybin channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/applyvarcal/environment.yml b/modules/nf-core/sentieon/applyvarcal/environment.yml index bcd3a8b1c63..b7b5169a892 100644 --- a/modules/nf-core/sentieon/applyvarcal/environment.yml +++ b/modules/nf-core/sentieon/applyvarcal/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_applyvarcal channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/bwaindex/environment.yml b/modules/nf-core/sentieon/bwaindex/environment.yml index bcd3a8b1c63..5637671ad49 100644 --- a/modules/nf-core/sentieon/bwaindex/environment.yml +++ b/modules/nf-core/sentieon/bwaindex/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_bwaindex channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/bwamem/environment.yml b/modules/nf-core/sentieon/bwamem/environment.yml index bcd3a8b1c63..efd460cfa47 100644 --- a/modules/nf-core/sentieon/bwamem/environment.yml +++ b/modules/nf-core/sentieon/bwamem/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_bwamem channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/datametrics/environment.yml b/modules/nf-core/sentieon/datametrics/environment.yml index bcd3a8b1c63..919eceab253 100644 --- a/modules/nf-core/sentieon/datametrics/environment.yml +++ b/modules/nf-core/sentieon/datametrics/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_datametrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/dedup/environment.yml b/modules/nf-core/sentieon/dedup/environment.yml index bcd3a8b1c63..bda2b1385a4 100644 --- a/modules/nf-core/sentieon/dedup/environment.yml +++ b/modules/nf-core/sentieon/dedup/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_dedup channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/dnamodelapply/environment.yml b/modules/nf-core/sentieon/dnamodelapply/environment.yml index bcd3a8b1c63..3f92a79ab8b 100644 --- a/modules/nf-core/sentieon/dnamodelapply/environment.yml +++ b/modules/nf-core/sentieon/dnamodelapply/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_dnamodelapply channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/dnascope/environment.yml b/modules/nf-core/sentieon/dnascope/environment.yml index bcd3a8b1c63..2c5b4937bfa 100644 --- a/modules/nf-core/sentieon/dnascope/environment.yml +++ b/modules/nf-core/sentieon/dnascope/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_dnascope channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/gvcftyper/environment.yml b/modules/nf-core/sentieon/gvcftyper/environment.yml index bcd3a8b1c63..b7ec8c22141 100644 --- a/modules/nf-core/sentieon/gvcftyper/environment.yml +++ b/modules/nf-core/sentieon/gvcftyper/environment.yml @@ -1,3 +1,4 @@ +name: SENTIEON_GVCFTYPER channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/haplotyper/environment.yml b/modules/nf-core/sentieon/haplotyper/environment.yml index bcd3a8b1c63..5d8e4c58f93 100644 --- a/modules/nf-core/sentieon/haplotyper/environment.yml +++ b/modules/nf-core/sentieon/haplotyper/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_haplotyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/readwriter/environment.yml b/modules/nf-core/sentieon/readwriter/environment.yml index bcd3a8b1c63..e0f792fe276 100644 --- a/modules/nf-core/sentieon/readwriter/environment.yml +++ b/modules/nf-core/sentieon/readwriter/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_readwriter channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/tnhaplotyper2/environment.yml b/modules/nf-core/sentieon/tnhaplotyper2/environment.yml index bcd3a8b1c63..d6365cffe80 100644 --- a/modules/nf-core/sentieon/tnhaplotyper2/environment.yml +++ b/modules/nf-core/sentieon/tnhaplotyper2/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_tnhaplotyper2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/tnscope/environment.yml b/modules/nf-core/sentieon/tnscope/environment.yml index bcd3a8b1c63..0df6d173f04 100644 --- a/modules/nf-core/sentieon/tnscope/environment.yml +++ b/modules/nf-core/sentieon/tnscope/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_tnscope channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/varcal/environment.yml b/modules/nf-core/sentieon/varcal/environment.yml index bcd3a8b1c63..f04a8b78ce9 100644 --- a/modules/nf-core/sentieon/varcal/environment.yml +++ b/modules/nf-core/sentieon/varcal/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_varcal channels: - conda-forge - bioconda diff --git a/modules/nf-core/sentieon/wgsmetrics/environment.yml b/modules/nf-core/sentieon/wgsmetrics/environment.yml index bcd3a8b1c63..469bf2477dc 100644 --- a/modules/nf-core/sentieon/wgsmetrics/environment.yml +++ b/modules/nf-core/sentieon/wgsmetrics/environment.yml @@ -1,3 +1,4 @@ +name: sentieon_wgsmetrics channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/fx2tab/environment.yml b/modules/nf-core/seqkit/fx2tab/environment.yml index 66770b103f7..5cc5f9b43d5 100644 --- a/modules/nf-core/seqkit/fx2tab/environment.yml +++ b/modules/nf-core/seqkit/fx2tab/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_fx2tab channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/grep/environment.yml b/modules/nf-core/seqkit/grep/environment.yml index e60d4522a6f..293b922f388 100644 --- a/modules/nf-core/seqkit/grep/environment.yml +++ b/modules/nf-core/seqkit/grep/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_grep channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/pair/environment.yml b/modules/nf-core/seqkit/pair/environment.yml index 20d5c499c8f..5cd2bfbb1d2 100644 --- a/modules/nf-core/seqkit/pair/environment.yml +++ b/modules/nf-core/seqkit/pair/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_pair channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/replace/environment.yml b/modules/nf-core/seqkit/replace/environment.yml index 20d5c499c8f..a59dc4a21c7 100644 --- a/modules/nf-core/seqkit/replace/environment.yml +++ b/modules/nf-core/seqkit/replace/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_replace channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/sliding/environment.yml b/modules/nf-core/seqkit/sliding/environment.yml index 20d5c499c8f..359903d498d 100644 --- a/modules/nf-core/seqkit/sliding/environment.yml +++ b/modules/nf-core/seqkit/sliding/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_sliding channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/split2/environment.yml b/modules/nf-core/seqkit/split2/environment.yml index 20d5c499c8f..3b10d62f347 100644 --- a/modules/nf-core/seqkit/split2/environment.yml +++ b/modules/nf-core/seqkit/split2/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_split2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/stats/environment.yml b/modules/nf-core/seqkit/stats/environment.yml index 9c8a88d89a9..cd989a046c4 100644 --- a/modules/nf-core/seqkit/stats/environment.yml +++ b/modules/nf-core/seqkit/stats/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_stats channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqkit/tab2fx/environment.yml b/modules/nf-core/seqkit/tab2fx/environment.yml index 66770b103f7..ebcf08dd568 100644 --- a/modules/nf-core/seqkit/tab2fx/environment.yml +++ b/modules/nf-core/seqkit/tab2fx/environment.yml @@ -1,3 +1,4 @@ +name: seqkit_tab2fx channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqsero2/environment.yml b/modules/nf-core/seqsero2/environment.yml index 31273c0f9a3..e26f2b2c6d6 100644 --- a/modules/nf-core/seqsero2/environment.yml +++ b/modules/nf-core/seqsero2/environment.yml @@ -1,3 +1,4 @@ +name: seqsero2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/cutn/environment.yml b/modules/nf-core/seqtk/cutn/environment.yml index 7dda5cd7765..a57afbb6fc8 100644 --- a/modules/nf-core/seqtk/cutn/environment.yml +++ b/modules/nf-core/seqtk/cutn/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_cutn channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/mergepe/environment.yml b/modules/nf-core/seqtk/mergepe/environment.yml index 8860e9f3e18..cefab2163fc 100644 --- a/modules/nf-core/seqtk/mergepe/environment.yml +++ b/modules/nf-core/seqtk/mergepe/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_mergepe channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/rename/environment.yml b/modules/nf-core/seqtk/rename/environment.yml index 8860e9f3e18..74e16645556 100644 --- a/modules/nf-core/seqtk/rename/environment.yml +++ b/modules/nf-core/seqtk/rename/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_rename channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/sample/environment.yml b/modules/nf-core/seqtk/sample/environment.yml index 8860e9f3e18..2344cd2723e 100644 --- a/modules/nf-core/seqtk/sample/environment.yml +++ b/modules/nf-core/seqtk/sample/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_sample channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/seq/environment.yml b/modules/nf-core/seqtk/seq/environment.yml index 7dda5cd7765..78dc2c84246 100644 --- a/modules/nf-core/seqtk/seq/environment.yml +++ b/modules/nf-core/seqtk/seq/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_seq channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqtk/subseq/environment.yml b/modules/nf-core/seqtk/subseq/environment.yml index 8860e9f3e18..42c4e8afcc3 100644 --- a/modules/nf-core/seqtk/subseq/environment.yml +++ b/modules/nf-core/seqtk/subseq/environment.yml @@ -1,3 +1,4 @@ +name: seqtk_subseq channels: - conda-forge - bioconda diff --git a/modules/nf-core/sequencetools/pileupcaller/environment.yml b/modules/nf-core/sequencetools/pileupcaller/environment.yml index 7945f8b95ee..98ac1fa5886 100644 --- a/modules/nf-core/sequencetools/pileupcaller/environment.yml +++ b/modules/nf-core/sequencetools/pileupcaller/environment.yml @@ -1,3 +1,4 @@ +name: sequencetools_pileupcaller channels: - conda-forge - bioconda diff --git a/modules/nf-core/sequenzautils/bam2seqz/environment.yml b/modules/nf-core/sequenzautils/bam2seqz/environment.yml index 55d049a0c6a..9e879c76fb8 100644 --- a/modules/nf-core/sequenzautils/bam2seqz/environment.yml +++ b/modules/nf-core/sequenzautils/bam2seqz/environment.yml @@ -1,3 +1,4 @@ +name: sequenzautils_bam2seqz channels: - conda-forge - bioconda diff --git a/modules/nf-core/sequenzautils/gcwiggle/environment.yml b/modules/nf-core/sequenzautils/gcwiggle/environment.yml index a65cdefa0ba..e46785dec93 100644 --- a/modules/nf-core/sequenzautils/gcwiggle/environment.yml +++ b/modules/nf-core/sequenzautils/gcwiggle/environment.yml @@ -1,3 +1,4 @@ +name: sequenzautils_gcwiggle channels: - conda-forge - bioconda diff --git a/modules/nf-core/seqwish/induce/environment.yml b/modules/nf-core/seqwish/induce/environment.yml index 289361f1bf2..63711c0b216 100644 --- a/modules/nf-core/seqwish/induce/environment.yml +++ b/modules/nf-core/seqwish/induce/environment.yml @@ -1,3 +1,4 @@ +name: seqwish_induce channels: - conda-forge - bioconda diff --git a/modules/nf-core/seroba/run/environment.yml b/modules/nf-core/seroba/run/environment.yml index ae84cc5c731..724c39c91af 100644 --- a/modules/nf-core/seroba/run/environment.yml +++ b/modules/nf-core/seroba/run/environment.yml @@ -1,3 +1,4 @@ +name: seroba_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/sexdeterrmine/environment.yml b/modules/nf-core/sexdeterrmine/environment.yml index 10753a01890..285ea9777d4 100644 --- a/modules/nf-core/sexdeterrmine/environment.yml +++ b/modules/nf-core/sexdeterrmine/environment.yml @@ -1,3 +1,4 @@ +name: sexdeterrmine channels: - conda-forge - bioconda diff --git a/modules/nf-core/sgdemux/environment.yml b/modules/nf-core/sgdemux/environment.yml index 44bbd59f642..57eccdd2277 100644 --- a/modules/nf-core/sgdemux/environment.yml +++ b/modules/nf-core/sgdemux/environment.yml @@ -1,3 +1,4 @@ +name: sgdemux channels: - conda-forge - bioconda diff --git a/modules/nf-core/shapeit5/ligate/environment.yml b/modules/nf-core/shapeit5/ligate/environment.yml index 8b42fd24125..d4c71302f22 100644 --- a/modules/nf-core/shapeit5/ligate/environment.yml +++ b/modules/nf-core/shapeit5/ligate/environment.yml @@ -1,3 +1,4 @@ +name: shapeit5_ligate channels: - conda-forge - bioconda diff --git a/modules/nf-core/shapeit5/phasecommon/environment.yml b/modules/nf-core/shapeit5/phasecommon/environment.yml index 8b42fd24125..8bc91822d31 100644 --- a/modules/nf-core/shapeit5/phasecommon/environment.yml +++ b/modules/nf-core/shapeit5/phasecommon/environment.yml @@ -1,3 +1,4 @@ +name: shapeit5_phasecommon channels: - conda-forge - bioconda diff --git a/modules/nf-core/shapeit5/phaserare/environment.yml b/modules/nf-core/shapeit5/phaserare/environment.yml index 8b42fd24125..2ce985bb44a 100644 --- a/modules/nf-core/shapeit5/phaserare/environment.yml +++ b/modules/nf-core/shapeit5/phaserare/environment.yml @@ -1,3 +1,4 @@ +name: shapeit5_phaserare channels: - conda-forge - bioconda diff --git a/modules/nf-core/shapeit5/switch/environment.yml b/modules/nf-core/shapeit5/switch/environment.yml index 8b42fd24125..8a55b59d686 100644 --- a/modules/nf-core/shapeit5/switch/environment.yml +++ b/modules/nf-core/shapeit5/switch/environment.yml @@ -1,3 +1,4 @@ +name: shapeit5_switch channels: - conda-forge - bioconda diff --git a/modules/nf-core/shasta/environment.yml b/modules/nf-core/shasta/environment.yml index 6c0d7af9188..1a822a92f22 100644 --- a/modules/nf-core/shasta/environment.yml +++ b/modules/nf-core/shasta/environment.yml @@ -1,3 +1,4 @@ +name: shasta channels: - conda-forge - bioconda diff --git a/modules/nf-core/shasum/environment.yml b/modules/nf-core/shasum/environment.yml index d9675fcebb4..1041bc3018b 100644 --- a/modules/nf-core/shasum/environment.yml +++ b/modules/nf-core/shasum/environment.yml @@ -1,3 +1,4 @@ +name: shasum channels: - conda-forge - bioconda diff --git a/modules/nf-core/shigatyper/environment.yml b/modules/nf-core/shigatyper/environment.yml index 2eb7842cae8..546e2498057 100644 --- a/modules/nf-core/shigatyper/environment.yml +++ b/modules/nf-core/shigatyper/environment.yml @@ -1,3 +1,4 @@ +name: shigatyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/shigeifinder/environment.yml b/modules/nf-core/shigeifinder/environment.yml index 0eb49b0c1a6..44bccb481e0 100644 --- a/modules/nf-core/shigeifinder/environment.yml +++ b/modules/nf-core/shigeifinder/environment.yml @@ -1,3 +1,4 @@ +name: shigeifinder channels: - conda-forge - bioconda diff --git a/modules/nf-core/shinyngs/app/environment.yml b/modules/nf-core/shinyngs/app/environment.yml index 3bf455c0eaa..69103dc8515 100644 --- a/modules/nf-core/shinyngs/app/environment.yml +++ b/modules/nf-core/shinyngs/app/environment.yml @@ -1,3 +1,4 @@ +name: shinyngs_app channels: - conda-forge - bioconda diff --git a/modules/nf-core/shinyngs/staticdifferential/environment.yml b/modules/nf-core/shinyngs/staticdifferential/environment.yml index 3bf455c0eaa..9e791984f35 100644 --- a/modules/nf-core/shinyngs/staticdifferential/environment.yml +++ b/modules/nf-core/shinyngs/staticdifferential/environment.yml @@ -1,3 +1,4 @@ +name: shinyngs_staticdifferential channels: - conda-forge - bioconda diff --git a/modules/nf-core/shinyngs/staticexploratory/environment.yml b/modules/nf-core/shinyngs/staticexploratory/environment.yml index 3bf455c0eaa..d0840f3d856 100644 --- a/modules/nf-core/shinyngs/staticexploratory/environment.yml +++ b/modules/nf-core/shinyngs/staticexploratory/environment.yml @@ -1,3 +1,4 @@ +name: shinyngs_staticexploratory channels: - conda-forge - bioconda diff --git a/modules/nf-core/shinyngs/validatefomcomponents/environment.yml b/modules/nf-core/shinyngs/validatefomcomponents/environment.yml index 3bf455c0eaa..76926ad80d0 100644 --- a/modules/nf-core/shinyngs/validatefomcomponents/environment.yml +++ b/modules/nf-core/shinyngs/validatefomcomponents/environment.yml @@ -1,3 +1,4 @@ +name: shinyngs_validatefomcomponents channels: - conda-forge - bioconda diff --git a/modules/nf-core/shovill/environment.yml b/modules/nf-core/shovill/environment.yml index f21b1ec6fdf..8bb573de900 100644 --- a/modules/nf-core/shovill/environment.yml +++ b/modules/nf-core/shovill/environment.yml @@ -1,3 +1,4 @@ +name: shovill channels: - conda-forge - bioconda diff --git a/modules/nf-core/sickle/environment.yml b/modules/nf-core/sickle/environment.yml index db27dd9e565..caf39801922 100644 --- a/modules/nf-core/sickle/environment.yml +++ b/modules/nf-core/sickle/environment.yml @@ -1,3 +1,4 @@ +name: sickle channels: - conda-forge - bioconda diff --git a/modules/nf-core/simpleaf/index/environment.yml b/modules/nf-core/simpleaf/index/environment.yml index 178c4082bae..e49186965ed 100644 --- a/modules/nf-core/simpleaf/index/environment.yml +++ b/modules/nf-core/simpleaf/index/environment.yml @@ -1,3 +1,4 @@ +name: simpleaf_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/simpleaf/quant/environment.yml b/modules/nf-core/simpleaf/quant/environment.yml index 178c4082bae..7a957062f61 100644 --- a/modules/nf-core/simpleaf/quant/environment.yml +++ b/modules/nf-core/simpleaf/quant/environment.yml @@ -1,3 +1,4 @@ +name: simpleaf_quant channels: - conda-forge - bioconda diff --git a/modules/nf-core/sistr/environment.yml b/modules/nf-core/sistr/environment.yml index 5efd7bafae8..8aa248b839c 100644 --- a/modules/nf-core/sistr/environment.yml +++ b/modules/nf-core/sistr/environment.yml @@ -1,3 +1,4 @@ +name: sistr channels: - conda-forge - bioconda diff --git a/modules/nf-core/slimfastq/environment.yml b/modules/nf-core/slimfastq/environment.yml index 851ecd3130a..be359c71a3d 100644 --- a/modules/nf-core/slimfastq/environment.yml +++ b/modules/nf-core/slimfastq/environment.yml @@ -1,3 +1,4 @@ +name: slimfastq channels: - conda-forge - bioconda diff --git a/modules/nf-core/smncopynumbercaller/environment.yml b/modules/nf-core/smncopynumbercaller/environment.yml index bea62663335..3da92eeb298 100644 --- a/modules/nf-core/smncopynumbercaller/environment.yml +++ b/modules/nf-core/smncopynumbercaller/environment.yml @@ -1,3 +1,4 @@ +name: smncopynumbercaller channels: - conda-forge - bioconda diff --git a/modules/nf-core/smoothxg/environment.yml b/modules/nf-core/smoothxg/environment.yml index b3b0168bc22..6156f59773f 100644 --- a/modules/nf-core/smoothxg/environment.yml +++ b/modules/nf-core/smoothxg/environment.yml @@ -1,3 +1,4 @@ +name: smoothxg channels: - conda-forge - bioconda diff --git a/modules/nf-core/smoove/call/environment.yml b/modules/nf-core/smoove/call/environment.yml index d1a49ca5100..751de65791a 100644 --- a/modules/nf-core/smoove/call/environment.yml +++ b/modules/nf-core/smoove/call/environment.yml @@ -1,3 +1,4 @@ +name: smoove_call channels: - conda-forge - bioconda diff --git a/modules/nf-core/snakemake/environment.yml b/modules/nf-core/snakemake/environment.yml index 5e90615fa36..bb68502e3dc 100644 --- a/modules/nf-core/snakemake/environment.yml +++ b/modules/nf-core/snakemake/environment.yml @@ -1,3 +1,4 @@ +name: snakemake channels: - conda-forge - bioconda diff --git a/modules/nf-core/snapaligner/align/environment.yml b/modules/nf-core/snapaligner/align/environment.yml index 0a0771d56a1..cc8b82da874 100644 --- a/modules/nf-core/snapaligner/align/environment.yml +++ b/modules/nf-core/snapaligner/align/environment.yml @@ -1,3 +1,4 @@ +name: snapaligner_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/snapaligner/index/environment.yml b/modules/nf-core/snapaligner/index/environment.yml index 0a0771d56a1..b6d07d08421 100644 --- a/modules/nf-core/snapaligner/index/environment.yml +++ b/modules/nf-core/snapaligner/index/environment.yml @@ -1,3 +1,4 @@ +name: snapaligner_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/sniffles/environment.yml b/modules/nf-core/sniffles/environment.yml index c32a6a576a0..db8f3f69cca 100644 --- a/modules/nf-core/sniffles/environment.yml +++ b/modules/nf-core/sniffles/environment.yml @@ -1,3 +1,4 @@ +name: sniffles channels: - conda-forge - bioconda diff --git a/modules/nf-core/snippy/core/environment.yml b/modules/nf-core/snippy/core/environment.yml index 30f928b00e2..dad60324ee1 100644 --- a/modules/nf-core/snippy/core/environment.yml +++ b/modules/nf-core/snippy/core/environment.yml @@ -1,3 +1,4 @@ +name: snippy_core channels: - conda-forge - bioconda diff --git a/modules/nf-core/snippy/run/environment.yml b/modules/nf-core/snippy/run/environment.yml index 30f928b00e2..2152ec52578 100644 --- a/modules/nf-core/snippy/run/environment.yml +++ b/modules/nf-core/snippy/run/environment.yml @@ -1,3 +1,4 @@ +name: snippy_run channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpdists/environment.yml b/modules/nf-core/snpdists/environment.yml index e0445b19c4a..2aeaa0a33ce 100644 --- a/modules/nf-core/snpdists/environment.yml +++ b/modules/nf-core/snpdists/environment.yml @@ -1,3 +1,4 @@ +name: snpdists channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpeff/download/environment.yml b/modules/nf-core/snpeff/download/environment.yml index 7d54aa5bdbc..ac7b2bfa7f3 100644 --- a/modules/nf-core/snpeff/download/environment.yml +++ b/modules/nf-core/snpeff/download/environment.yml @@ -1,3 +1,4 @@ +name: SNPEFF_DOWNLOAD channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpeff/environment.yml b/modules/nf-core/snpeff/environment.yml index e0527690a67..b11ba0bd988 100644 --- a/modules/nf-core/snpeff/environment.yml +++ b/modules/nf-core/snpeff/environment.yml @@ -1,3 +1,4 @@ +name: # You can use this file to create a conda environment for this module: # conda env create -f environment.yml name: nf-core-snpeff-5.1 diff --git a/modules/nf-core/snpeff/snpeff/environment.yml b/modules/nf-core/snpeff/snpeff/environment.yml index 7d54aa5bdbc..f4ae72fd843 100644 --- a/modules/nf-core/snpeff/snpeff/environment.yml +++ b/modules/nf-core/snpeff/snpeff/environment.yml @@ -1,3 +1,4 @@ +name: SNPEFF_SNPEFF channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpsift/annotate/environment.yml b/modules/nf-core/snpsift/annotate/environment.yml index 152f5fbc5db..05a89b8aae4 100644 --- a/modules/nf-core/snpsift/annotate/environment.yml +++ b/modules/nf-core/snpsift/annotate/environment.yml @@ -1,3 +1,4 @@ +name: snpsift_annotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpsift/dbnsfp/environment.yml b/modules/nf-core/snpsift/dbnsfp/environment.yml index 152f5fbc5db..19f0b7f1246 100644 --- a/modules/nf-core/snpsift/dbnsfp/environment.yml +++ b/modules/nf-core/snpsift/dbnsfp/environment.yml @@ -1,3 +1,4 @@ +name: snpsift_dbnsfp channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpsift/split/environment.yml b/modules/nf-core/snpsift/split/environment.yml index 089efb02333..68a6dc11bb3 100644 --- a/modules/nf-core/snpsift/split/environment.yml +++ b/modules/nf-core/snpsift/split/environment.yml @@ -1,3 +1,4 @@ +name: snpsift_split channels: - conda-forge - bioconda diff --git a/modules/nf-core/snpsites/environment.yml b/modules/nf-core/snpsites/environment.yml index 8ca03b25be7..b5462aa9a1e 100644 --- a/modules/nf-core/snpsites/environment.yml +++ b/modules/nf-core/snpsites/environment.yml @@ -1,3 +1,4 @@ +name: snpsites channels: - conda-forge - bioconda diff --git a/modules/nf-core/somalier/ancestry/environment.yml b/modules/nf-core/somalier/ancestry/environment.yml index 1a2a075566c..8cc3ce21039 100644 --- a/modules/nf-core/somalier/ancestry/environment.yml +++ b/modules/nf-core/somalier/ancestry/environment.yml @@ -1,3 +1,4 @@ +name: somalier_ancestry channels: - conda-forge - bioconda diff --git a/modules/nf-core/somalier/extract/environment.yml b/modules/nf-core/somalier/extract/environment.yml index 1a2a075566c..e0dd11c977b 100644 --- a/modules/nf-core/somalier/extract/environment.yml +++ b/modules/nf-core/somalier/extract/environment.yml @@ -1,3 +1,4 @@ +name: somalier_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/somalier/relate/environment.yml b/modules/nf-core/somalier/relate/environment.yml index 1a2a075566c..b8b70f674a0 100644 --- a/modules/nf-core/somalier/relate/environment.yml +++ b/modules/nf-core/somalier/relate/environment.yml @@ -1,3 +1,4 @@ +name: somalier_relate channels: - conda-forge - bioconda diff --git a/modules/nf-core/sortmerna/environment.yml b/modules/nf-core/sortmerna/environment.yml index 513bfdc1c80..3dae00af28f 100644 --- a/modules/nf-core/sortmerna/environment.yml +++ b/modules/nf-core/sortmerna/environment.yml @@ -1,3 +1,4 @@ +name: sortmerna channels: - conda-forge - bioconda diff --git a/modules/nf-core/sourmash/compare/environment.yml b/modules/nf-core/sourmash/compare/environment.yml index 7a06d48c420..47ede1eccfd 100644 --- a/modules/nf-core/sourmash/compare/environment.yml +++ b/modules/nf-core/sourmash/compare/environment.yml @@ -1,3 +1,4 @@ +name: sourmash_compare channels: - conda-forge - bioconda diff --git a/modules/nf-core/sourmash/gather/environment.yml b/modules/nf-core/sourmash/gather/environment.yml index 7a06d48c420..261d9405a94 100644 --- a/modules/nf-core/sourmash/gather/environment.yml +++ b/modules/nf-core/sourmash/gather/environment.yml @@ -1,3 +1,4 @@ +name: sourmash_gather channels: - conda-forge - bioconda diff --git a/modules/nf-core/sourmash/index/environment.yml b/modules/nf-core/sourmash/index/environment.yml index 7a06d48c420..4f64cb7a07e 100644 --- a/modules/nf-core/sourmash/index/environment.yml +++ b/modules/nf-core/sourmash/index/environment.yml @@ -1,3 +1,4 @@ +name: sourmash_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/sourmash/sketch/environment.yml b/modules/nf-core/sourmash/sketch/environment.yml index 7a06d48c420..1387777af1f 100644 --- a/modules/nf-core/sourmash/sketch/environment.yml +++ b/modules/nf-core/sourmash/sketch/environment.yml @@ -1,3 +1,4 @@ +name: sourmash_sketch channels: - conda-forge - bioconda diff --git a/modules/nf-core/sourmash/taxannotate/environment.yml b/modules/nf-core/sourmash/taxannotate/environment.yml index 7a06d48c420..ea3ff96fc38 100644 --- a/modules/nf-core/sourmash/taxannotate/environment.yml +++ b/modules/nf-core/sourmash/taxannotate/environment.yml @@ -1,3 +1,4 @@ +name: sourmash_taxannotate channels: - conda-forge - bioconda diff --git a/modules/nf-core/spaceranger/count/environment.yml b/modules/nf-core/spaceranger/count/environment.yml index bcd3a8b1c63..a5049bf027d 100644 --- a/modules/nf-core/spaceranger/count/environment.yml +++ b/modules/nf-core/spaceranger/count/environment.yml @@ -1,3 +1,4 @@ +name: spaceranger_count channels: - conda-forge - bioconda diff --git a/modules/nf-core/spaceranger/mkgtf/environment.yml b/modules/nf-core/spaceranger/mkgtf/environment.yml index bcd3a8b1c63..c0756cb1708 100644 --- a/modules/nf-core/spaceranger/mkgtf/environment.yml +++ b/modules/nf-core/spaceranger/mkgtf/environment.yml @@ -1,3 +1,4 @@ +name: spaceranger_mkgtf channels: - conda-forge - bioconda diff --git a/modules/nf-core/spaceranger/mkref/environment.yml b/modules/nf-core/spaceranger/mkref/environment.yml index bcd3a8b1c63..5786d2cf050 100644 --- a/modules/nf-core/spaceranger/mkref/environment.yml +++ b/modules/nf-core/spaceranger/mkref/environment.yml @@ -1,3 +1,4 @@ +name: spaceranger_mkref channels: - conda-forge - bioconda diff --git a/modules/nf-core/spades/environment.yml b/modules/nf-core/spades/environment.yml index 92566a4a322..123158141bd 100644 --- a/modules/nf-core/spades/environment.yml +++ b/modules/nf-core/spades/environment.yml @@ -1,3 +1,4 @@ +name: spades channels: - conda-forge - bioconda diff --git a/modules/nf-core/spatyper/environment.yml b/modules/nf-core/spatyper/environment.yml index ea58749172d..c03d9eb6720 100644 --- a/modules/nf-core/spatyper/environment.yml +++ b/modules/nf-core/spatyper/environment.yml @@ -1,3 +1,4 @@ +name: spatyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/spring/compress/environment.yml b/modules/nf-core/spring/compress/environment.yml index 862b2705837..f857bf30b66 100644 --- a/modules/nf-core/spring/compress/environment.yml +++ b/modules/nf-core/spring/compress/environment.yml @@ -1,3 +1,4 @@ +name: spring_compress channels: - conda-forge - bioconda diff --git a/modules/nf-core/spring/decompress/environment.yml b/modules/nf-core/spring/decompress/environment.yml index 862b2705837..d960ee714ad 100644 --- a/modules/nf-core/spring/decompress/environment.yml +++ b/modules/nf-core/spring/decompress/environment.yml @@ -1,3 +1,4 @@ +name: spring_decompress channels: - conda-forge - bioconda diff --git a/modules/nf-core/sratools/fasterqdump/environment.yml b/modules/nf-core/sratools/fasterqdump/environment.yml index 19538292757..4011b6914a0 100644 --- a/modules/nf-core/sratools/fasterqdump/environment.yml +++ b/modules/nf-core/sratools/fasterqdump/environment.yml @@ -1,3 +1,4 @@ +name: sratools_fasterqdump channels: - conda-forge - bioconda diff --git a/modules/nf-core/sratools/prefetch/environment.yml b/modules/nf-core/sratools/prefetch/environment.yml index ea7ffbb9af2..cfc7d9a8363 100644 --- a/modules/nf-core/sratools/prefetch/environment.yml +++ b/modules/nf-core/sratools/prefetch/environment.yml @@ -1,3 +1,4 @@ +name: sratools_prefetch channels: - conda-forge - bioconda diff --git a/modules/nf-core/srst2/srst2/environment.yml b/modules/nf-core/srst2/srst2/environment.yml index 87dda1f95d5..4c9d6516a25 100644 --- a/modules/nf-core/srst2/srst2/environment.yml +++ b/modules/nf-core/srst2/srst2/environment.yml @@ -1,3 +1,4 @@ +name: srst2_srst2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/ssuissero/environment.yml b/modules/nf-core/ssuissero/environment.yml index 3eceee8b779..06f426d206a 100644 --- a/modules/nf-core/ssuissero/environment.yml +++ b/modules/nf-core/ssuissero/environment.yml @@ -1,3 +1,4 @@ +name: ssuissero channels: - conda-forge - bioconda diff --git a/modules/nf-core/stadeniolib/scramble/environment.yml b/modules/nf-core/stadeniolib/scramble/environment.yml index 1d80e71caf4..c1a2d2e0269 100644 --- a/modules/nf-core/stadeniolib/scramble/environment.yml +++ b/modules/nf-core/stadeniolib/scramble/environment.yml @@ -1,3 +1,4 @@ +name: stadeniolib_scramble channels: - conda-forge - bioconda diff --git a/modules/nf-core/staphopiasccmec/environment.yml b/modules/nf-core/staphopiasccmec/environment.yml index 5e3b674726a..ce91347ad47 100644 --- a/modules/nf-core/staphopiasccmec/environment.yml +++ b/modules/nf-core/staphopiasccmec/environment.yml @@ -1,3 +1,4 @@ +name: staphopiasccmec channels: - conda-forge - bioconda diff --git a/modules/nf-core/star/align/environment.yml b/modules/nf-core/star/align/environment.yml index a61d2f6de52..6db2098847d 100644 --- a/modules/nf-core/star/align/environment.yml +++ b/modules/nf-core/star/align/environment.yml @@ -1,3 +1,4 @@ +name: star_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/star/genomegenerate/environment.yml b/modules/nf-core/star/genomegenerate/environment.yml index a61d2f6de52..0b35ff51896 100644 --- a/modules/nf-core/star/genomegenerate/environment.yml +++ b/modules/nf-core/star/genomegenerate/environment.yml @@ -1,3 +1,4 @@ +name: star_genomegenerate channels: - conda-forge - bioconda diff --git a/modules/nf-core/star/starsolo/environment.yml b/modules/nf-core/star/starsolo/environment.yml index 915c811ad2c..e7c4b1a63b8 100644 --- a/modules/nf-core/star/starsolo/environment.yml +++ b/modules/nf-core/star/starsolo/environment.yml @@ -1,3 +1,4 @@ +name: starsolo channels: - conda-forge - bioconda diff --git a/modules/nf-core/stecfinder/environment.yml b/modules/nf-core/stecfinder/environment.yml index 56413d99fdb..19919d9c6bd 100644 --- a/modules/nf-core/stecfinder/environment.yml +++ b/modules/nf-core/stecfinder/environment.yml @@ -1,3 +1,4 @@ +name: stecfinder channels: - conda-forge - bioconda diff --git a/modules/nf-core/stitch/environment.yml b/modules/nf-core/stitch/environment.yml index cb3219e6af8..3facc1bcaea 100644 --- a/modules/nf-core/stitch/environment.yml +++ b/modules/nf-core/stitch/environment.yml @@ -1,3 +1,4 @@ +name: stitch channels: - conda-forge - bioconda diff --git a/modules/nf-core/stranger/environment.yml b/modules/nf-core/stranger/environment.yml index 1fbee123dfe..78455053e2f 100644 --- a/modules/nf-core/stranger/environment.yml +++ b/modules/nf-core/stranger/environment.yml @@ -1,3 +1,4 @@ +name: stranger channels: - conda-forge - bioconda diff --git a/modules/nf-core/strelka/germline/environment.yml b/modules/nf-core/strelka/germline/environment.yml index 5c9c1cf81a7..23bd165b214 100644 --- a/modules/nf-core/strelka/germline/environment.yml +++ b/modules/nf-core/strelka/germline/environment.yml @@ -1,3 +1,4 @@ +name: strelka_germline channels: - conda-forge - bioconda diff --git a/modules/nf-core/strelka/somatic/environment.yml b/modules/nf-core/strelka/somatic/environment.yml index 5c9c1cf81a7..ecbc865ec94 100644 --- a/modules/nf-core/strelka/somatic/environment.yml +++ b/modules/nf-core/strelka/somatic/environment.yml @@ -1,3 +1,4 @@ +name: strelka_somatic channels: - conda-forge - bioconda diff --git a/modules/nf-core/stringtie/merge/environment.yml b/modules/nf-core/stringtie/merge/environment.yml index 376fba8c08b..9914b2025bb 100644 --- a/modules/nf-core/stringtie/merge/environment.yml +++ b/modules/nf-core/stringtie/merge/environment.yml @@ -1,3 +1,4 @@ +name: stringtie_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/stringtie/stringtie/environment.yml b/modules/nf-core/stringtie/stringtie/environment.yml index 376fba8c08b..7a0eccdb89a 100644 --- a/modules/nf-core/stringtie/stringtie/environment.yml +++ b/modules/nf-core/stringtie/stringtie/environment.yml @@ -1,3 +1,4 @@ +name: stringtie_stringtie channels: - conda-forge - bioconda diff --git a/modules/nf-core/subread/featurecounts/environment.yml b/modules/nf-core/subread/featurecounts/environment.yml index 962c477f93f..ca19439d73a 100644 --- a/modules/nf-core/subread/featurecounts/environment.yml +++ b/modules/nf-core/subread/featurecounts/environment.yml @@ -1,3 +1,4 @@ +name: subread_featurecounts channels: - conda-forge - bioconda diff --git a/modules/nf-core/survivor/filter/environment.yml b/modules/nf-core/survivor/filter/environment.yml index 5f2d57a2b05..56839cee262 100644 --- a/modules/nf-core/survivor/filter/environment.yml +++ b/modules/nf-core/survivor/filter/environment.yml @@ -1,3 +1,4 @@ +name: survivor_filter channels: - conda-forge - bioconda diff --git a/modules/nf-core/survivor/merge/environment.yml b/modules/nf-core/survivor/merge/environment.yml index 5f2d57a2b05..9f46e0dfd7d 100644 --- a/modules/nf-core/survivor/merge/environment.yml +++ b/modules/nf-core/survivor/merge/environment.yml @@ -1,3 +1,4 @@ +name: survivor_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/survivor/simsv/environment.yml b/modules/nf-core/survivor/simsv/environment.yml index 5f2d57a2b05..285b0222bf4 100644 --- a/modules/nf-core/survivor/simsv/environment.yml +++ b/modules/nf-core/survivor/simsv/environment.yml @@ -1,3 +1,4 @@ +name: survivor_simsv channels: - conda-forge - bioconda diff --git a/modules/nf-core/svaba/environment.yml b/modules/nf-core/svaba/environment.yml index 21127e7244a..60b1aa0159e 100644 --- a/modules/nf-core/svaba/environment.yml +++ b/modules/nf-core/svaba/environment.yml @@ -1,3 +1,4 @@ +name: svaba channels: - conda-forge - bioconda diff --git a/modules/nf-core/svdb/merge/environment.yml b/modules/nf-core/svdb/merge/environment.yml index 5ce726b21a0..4aad50da52e 100644 --- a/modules/nf-core/svdb/merge/environment.yml +++ b/modules/nf-core/svdb/merge/environment.yml @@ -1,3 +1,4 @@ +name: svdb_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/svdb/query/environment.yml b/modules/nf-core/svdb/query/environment.yml index 8451ca7d2e5..bf048232f54 100644 --- a/modules/nf-core/svdb/query/environment.yml +++ b/modules/nf-core/svdb/query/environment.yml @@ -1,3 +1,4 @@ +name: svdb_query channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtk/baftest/environment.yml b/modules/nf-core/svtk/baftest/environment.yml index 143b1b7c26b..30a921f7035 100644 --- a/modules/nf-core/svtk/baftest/environment.yml +++ b/modules/nf-core/svtk/baftest/environment.yml @@ -1,3 +1,4 @@ +name: svtk_baftest channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtk/countsvtypes/environment.yml b/modules/nf-core/svtk/countsvtypes/environment.yml index 143b1b7c26b..342ade7680e 100644 --- a/modules/nf-core/svtk/countsvtypes/environment.yml +++ b/modules/nf-core/svtk/countsvtypes/environment.yml @@ -1,3 +1,4 @@ +name: svtk_countsvtypes channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtk/rdtest2vcf/environment.yml b/modules/nf-core/svtk/rdtest2vcf/environment.yml index 143b1b7c26b..80da8ec2db3 100644 --- a/modules/nf-core/svtk/rdtest2vcf/environment.yml +++ b/modules/nf-core/svtk/rdtest2vcf/environment.yml @@ -1,3 +1,4 @@ +name: svtk_rdtest2vcf channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtk/standardize/environment.yml b/modules/nf-core/svtk/standardize/environment.yml index 143b1b7c26b..f9ab247dda3 100644 --- a/modules/nf-core/svtk/standardize/environment.yml +++ b/modules/nf-core/svtk/standardize/environment.yml @@ -1,3 +1,4 @@ +name: svtk_standardize channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtk/vcf2bed/environment.yml b/modules/nf-core/svtk/vcf2bed/environment.yml index 143b1b7c26b..e05599070eb 100644 --- a/modules/nf-core/svtk/vcf2bed/environment.yml +++ b/modules/nf-core/svtk/vcf2bed/environment.yml @@ -1,3 +1,4 @@ +name: svtk_vcf2bed channels: - conda-forge - bioconda diff --git a/modules/nf-core/svtyper/svtyper/environment.yml b/modules/nf-core/svtyper/svtyper/environment.yml index a6dbcad8caa..5b3c6c9152a 100644 --- a/modules/nf-core/svtyper/svtyper/environment.yml +++ b/modules/nf-core/svtyper/svtyper/environment.yml @@ -1,3 +1,4 @@ +name: svtyper_svtyper channels: - conda-forge - bioconda diff --git a/modules/nf-core/tabix/bgzip/environment.yml b/modules/nf-core/tabix/bgzip/environment.yml index fdd84057b84..4fe40c5660e 100644 --- a/modules/nf-core/tabix/bgzip/environment.yml +++ b/modules/nf-core/tabix/bgzip/environment.yml @@ -1,3 +1,4 @@ +name: tabix_bgzip channels: - conda-forge - bioconda diff --git a/modules/nf-core/tabix/bgziptabix/environment.yml b/modules/nf-core/tabix/bgziptabix/environment.yml index fdd84057b84..028461c987b 100644 --- a/modules/nf-core/tabix/bgziptabix/environment.yml +++ b/modules/nf-core/tabix/bgziptabix/environment.yml @@ -1,3 +1,4 @@ +name: tabix_bgziptabix channels: - conda-forge - bioconda diff --git a/modules/nf-core/tabix/tabix/environment.yml b/modules/nf-core/tabix/tabix/environment.yml index fdd84057b84..7167fb87d69 100644 --- a/modules/nf-core/tabix/tabix/environment.yml +++ b/modules/nf-core/tabix/tabix/environment.yml @@ -1,3 +1,4 @@ +name: tabix_tabix channels: - conda-forge - bioconda diff --git a/modules/nf-core/tailfindr/environment.yml b/modules/nf-core/tailfindr/environment.yml index d1b01dfff16..f8ff002c69f 100644 --- a/modules/nf-core/tailfindr/environment.yml +++ b/modules/nf-core/tailfindr/environment.yml @@ -1,3 +1,4 @@ +name: tailfindr channels: - conda-forge - bioconda diff --git a/modules/nf-core/taxpasta/merge/environment.yml b/modules/nf-core/taxpasta/merge/environment.yml index 9d3bb1a9040..cfcd405e124 100644 --- a/modules/nf-core/taxpasta/merge/environment.yml +++ b/modules/nf-core/taxpasta/merge/environment.yml @@ -1,3 +1,4 @@ +name: taxpasta_merge channels: - conda-forge - bioconda diff --git a/modules/nf-core/taxpasta/standardise/environment.yml b/modules/nf-core/taxpasta/standardise/environment.yml index 9d3bb1a9040..81b35fc487c 100644 --- a/modules/nf-core/taxpasta/standardise/environment.yml +++ b/modules/nf-core/taxpasta/standardise/environment.yml @@ -1,3 +1,4 @@ +name: taxpasta_standardise channels: - conda-forge - bioconda diff --git a/modules/nf-core/tbprofiler/profile/environment.yml b/modules/nf-core/tbprofiler/profile/environment.yml index 3016a9d5825..ae2d3b9bdcf 100644 --- a/modules/nf-core/tbprofiler/profile/environment.yml +++ b/modules/nf-core/tbprofiler/profile/environment.yml @@ -1,3 +1,4 @@ +name: tbprofiler_profile channels: - conda-forge - bioconda diff --git a/modules/nf-core/tcoffee/align/environment.yml b/modules/nf-core/tcoffee/align/environment.yml index af8132c9cb3..6f63405d47e 100644 --- a/modules/nf-core/tcoffee/align/environment.yml +++ b/modules/nf-core/tcoffee/align/environment.yml @@ -1,3 +1,4 @@ +name: tcoffee_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/tcoffee/seqreformat/environment.yml b/modules/nf-core/tcoffee/seqreformat/environment.yml index af8132c9cb3..84afe8aa255 100644 --- a/modules/nf-core/tcoffee/seqreformat/environment.yml +++ b/modules/nf-core/tcoffee/seqreformat/environment.yml @@ -1,3 +1,4 @@ +name: tcoffee_seqreformat channels: - conda-forge - bioconda diff --git a/modules/nf-core/tiara/tiara/environment.yml b/modules/nf-core/tiara/tiara/environment.yml index 3b585a1a672..18d44734100 100644 --- a/modules/nf-core/tiara/tiara/environment.yml +++ b/modules/nf-core/tiara/tiara/environment.yml @@ -1,3 +1,4 @@ +name: tiara_tiara channels: - conda-forge - bioconda diff --git a/modules/nf-core/tiddit/cov/environment.yml b/modules/nf-core/tiddit/cov/environment.yml index 69963f7c4b5..6b024492e46 100644 --- a/modules/nf-core/tiddit/cov/environment.yml +++ b/modules/nf-core/tiddit/cov/environment.yml @@ -1,3 +1,4 @@ +name: tiddit_cov channels: - conda-forge - bioconda diff --git a/modules/nf-core/tiddit/sv/environment.yml b/modules/nf-core/tiddit/sv/environment.yml index 69963f7c4b5..d0367f17175 100644 --- a/modules/nf-core/tiddit/sv/environment.yml +++ b/modules/nf-core/tiddit/sv/environment.yml @@ -1,3 +1,4 @@ +name: tiddit_sv channels: - conda-forge - bioconda diff --git a/modules/nf-core/topas/gencons/environment.yml b/modules/nf-core/topas/gencons/environment.yml index e535ea2b58e..7fbf438641b 100644 --- a/modules/nf-core/topas/gencons/environment.yml +++ b/modules/nf-core/topas/gencons/environment.yml @@ -1,3 +1,4 @@ +name: topas_gencons channels: - conda-forge - bioconda diff --git a/modules/nf-core/transdecoder/longorf/environment.yml b/modules/nf-core/transdecoder/longorf/environment.yml index 5c3f92f9ff8..29a06d31868 100644 --- a/modules/nf-core/transdecoder/longorf/environment.yml +++ b/modules/nf-core/transdecoder/longorf/environment.yml @@ -1,3 +1,4 @@ +name: transdecoder_longorf channels: - conda-forge - bioconda diff --git a/modules/nf-core/transdecoder/predict/environment.yml b/modules/nf-core/transdecoder/predict/environment.yml index 5c3f92f9ff8..07efaa4f076 100644 --- a/modules/nf-core/transdecoder/predict/environment.yml +++ b/modules/nf-core/transdecoder/predict/environment.yml @@ -1,3 +1,4 @@ +name: transdecoder_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/trimgalore/environment.yml b/modules/nf-core/trimgalore/environment.yml index a53a29a05b9..6cd0f51b33f 100644 --- a/modules/nf-core/trimgalore/environment.yml +++ b/modules/nf-core/trimgalore/environment.yml @@ -1,3 +1,4 @@ +name: trimgalore channels: - conda-forge - bioconda diff --git a/modules/nf-core/trimmomatic/environment.yml b/modules/nf-core/trimmomatic/environment.yml index cbccdd72f7c..91145bb75e7 100644 --- a/modules/nf-core/trimmomatic/environment.yml +++ b/modules/nf-core/trimmomatic/environment.yml @@ -1,3 +1,4 @@ +name: trimmomatic channels: - conda-forge - bioconda diff --git a/modules/nf-core/trinity/environment.yml b/modules/nf-core/trinity/environment.yml index b491768cb8c..6f45526e69b 100644 --- a/modules/nf-core/trinity/environment.yml +++ b/modules/nf-core/trinity/environment.yml @@ -1,3 +1,4 @@ +name: trinity channels: - conda-forge - bioconda diff --git a/modules/nf-core/truvari/bench/environment.yml b/modules/nf-core/truvari/bench/environment.yml index a4f1277e4f4..033354b4a66 100644 --- a/modules/nf-core/truvari/bench/environment.yml +++ b/modules/nf-core/truvari/bench/environment.yml @@ -1,3 +1,4 @@ +name: truvari_bench channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/bedclip/environment.yml b/modules/nf-core/ucsc/bedclip/environment.yml index 440e80bab25..571dc2749bf 100644 --- a/modules/nf-core/ucsc/bedclip/environment.yml +++ b/modules/nf-core/ucsc/bedclip/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_bedclip channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/bedgraphtobigwig/environment.yml b/modules/nf-core/ucsc/bedgraphtobigwig/environment.yml index c5b97d0d31b..f91e216f587 100644 --- a/modules/nf-core/ucsc/bedgraphtobigwig/environment.yml +++ b/modules/nf-core/ucsc/bedgraphtobigwig/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_bedgraphtobigwig channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/bedtobigbed/environment.yml b/modules/nf-core/ucsc/bedtobigbed/environment.yml index 0c110f7ee5c..fc04b7cda1b 100644 --- a/modules/nf-core/ucsc/bedtobigbed/environment.yml +++ b/modules/nf-core/ucsc/bedtobigbed/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_bedtobigbed channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/bigwigaverageoverbed/environment.yml b/modules/nf-core/ucsc/bigwigaverageoverbed/environment.yml index 3ebc8a5f328..62deb297e26 100644 --- a/modules/nf-core/ucsc/bigwigaverageoverbed/environment.yml +++ b/modules/nf-core/ucsc/bigwigaverageoverbed/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_bigwigaverageoverbed channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/gtftogenepred/environment.yml b/modules/nf-core/ucsc/gtftogenepred/environment.yml index c5b11459546..5216fc8ffbf 100644 --- a/modules/nf-core/ucsc/gtftogenepred/environment.yml +++ b/modules/nf-core/ucsc/gtftogenepred/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_gtftogenepred channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/liftover/environment.yml b/modules/nf-core/ucsc/liftover/environment.yml index 6d6eda2cdb4..687955dc028 100644 --- a/modules/nf-core/ucsc/liftover/environment.yml +++ b/modules/nf-core/ucsc/liftover/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_liftover channels: - conda-forge - bioconda diff --git a/modules/nf-core/ucsc/wigtobigwig/environment.yml b/modules/nf-core/ucsc/wigtobigwig/environment.yml index 51bcac6318e..3e88a5dd421 100644 --- a/modules/nf-core/ucsc/wigtobigwig/environment.yml +++ b/modules/nf-core/ucsc/wigtobigwig/environment.yml @@ -1,3 +1,4 @@ +name: ucsc_wigtobigwig channels: - conda-forge - bioconda diff --git a/modules/nf-core/ultra/align/environment.yml b/modules/nf-core/ultra/align/environment.yml index ad9aea9b3d5..74ccba490fc 100644 --- a/modules/nf-core/ultra/align/environment.yml +++ b/modules/nf-core/ultra/align/environment.yml @@ -1,3 +1,4 @@ +name: ultra_align channels: - conda-forge - bioconda diff --git a/modules/nf-core/ultra/index/environment.yml b/modules/nf-core/ultra/index/environment.yml index 23ea68f5194..81f92d0e045 100644 --- a/modules/nf-core/ultra/index/environment.yml +++ b/modules/nf-core/ultra/index/environment.yml @@ -1,3 +1,4 @@ +name: ultra_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/ultra/pipeline/environment.yml b/modules/nf-core/ultra/pipeline/environment.yml index 23ea68f5194..f37e3ba74be 100644 --- a/modules/nf-core/ultra/pipeline/environment.yml +++ b/modules/nf-core/ultra/pipeline/environment.yml @@ -1,3 +1,4 @@ +name: ultra_pipeline channels: - conda-forge - bioconda diff --git a/modules/nf-core/ultraplex/environment.yml b/modules/nf-core/ultraplex/environment.yml index 3b54c3c902d..ccbeb1060f6 100644 --- a/modules/nf-core/ultraplex/environment.yml +++ b/modules/nf-core/ultraplex/environment.yml @@ -1,3 +1,4 @@ +name: ultraplex channels: - conda-forge - bioconda diff --git a/modules/nf-core/umicollapse/environment.yml b/modules/nf-core/umicollapse/environment.yml index 07218195fe8..8dbc65dc448 100644 --- a/modules/nf-core/umicollapse/environment.yml +++ b/modules/nf-core/umicollapse/environment.yml @@ -1,3 +1,4 @@ +name: umicollapse channels: - conda-forge - bioconda diff --git a/modules/nf-core/umitools/dedup/environment.yml b/modules/nf-core/umitools/dedup/environment.yml index 564453038cc..f443735f439 100644 --- a/modules/nf-core/umitools/dedup/environment.yml +++ b/modules/nf-core/umitools/dedup/environment.yml @@ -1,3 +1,4 @@ +name: umitools_dedup channels: - conda-forge - bioconda diff --git a/modules/nf-core/umitools/extract/environment.yml b/modules/nf-core/umitools/extract/environment.yml index 564453038cc..7d08ac0ec07 100644 --- a/modules/nf-core/umitools/extract/environment.yml +++ b/modules/nf-core/umitools/extract/environment.yml @@ -1,3 +1,4 @@ +name: umitools_extract channels: - conda-forge - bioconda diff --git a/modules/nf-core/umitools/group/environment.yml b/modules/nf-core/umitools/group/environment.yml index 564453038cc..cb2bdf6be21 100644 --- a/modules/nf-core/umitools/group/environment.yml +++ b/modules/nf-core/umitools/group/environment.yml @@ -1,3 +1,4 @@ +name: umitools_group channels: - conda-forge - bioconda diff --git a/modules/nf-core/unicycler/environment.yml b/modules/nf-core/unicycler/environment.yml index d390e0482a2..bf5c977b1c1 100644 --- a/modules/nf-core/unicycler/environment.yml +++ b/modules/nf-core/unicycler/environment.yml @@ -1,3 +1,4 @@ +name: unicycler channels: - conda-forge - bioconda diff --git a/modules/nf-core/universc/environment.yml b/modules/nf-core/universc/environment.yml index bcd3a8b1c63..e9cdf650779 100644 --- a/modules/nf-core/universc/environment.yml +++ b/modules/nf-core/universc/environment.yml @@ -1,3 +1,4 @@ +name: universc channels: - conda-forge - bioconda diff --git a/modules/nf-core/untar/environment.yml b/modules/nf-core/untar/environment.yml index 2d52ce64ace..d6917da3261 100644 --- a/modules/nf-core/untar/environment.yml +++ b/modules/nf-core/untar/environment.yml @@ -1,3 +1,4 @@ +name: untar channels: - conda-forge - bioconda diff --git a/modules/nf-core/untarfiles/environment.yml b/modules/nf-core/untarfiles/environment.yml index f57cdbe0798..e479f80d548 100644 --- a/modules/nf-core/untarfiles/environment.yml +++ b/modules/nf-core/untarfiles/environment.yml @@ -1,3 +1,4 @@ +name: untarfiles channels: - conda-forge - bioconda diff --git a/modules/nf-core/unzip/environment.yml b/modules/nf-core/unzip/environment.yml index 157fe95c01f..d3a535f1706 100644 --- a/modules/nf-core/unzip/environment.yml +++ b/modules/nf-core/unzip/environment.yml @@ -1,3 +1,4 @@ +name: unzip channels: - conda-forge - bioconda diff --git a/modules/nf-core/unzipfiles/environment.yml b/modules/nf-core/unzipfiles/environment.yml index 157fe95c01f..2f2ef1eb986 100644 --- a/modules/nf-core/unzipfiles/environment.yml +++ b/modules/nf-core/unzipfiles/environment.yml @@ -1,3 +1,4 @@ +name: unzipfiles channels: - conda-forge - bioconda diff --git a/modules/nf-core/upd/environment.yml b/modules/nf-core/upd/environment.yml index 375419094cc..77b652272f9 100644 --- a/modules/nf-core/upd/environment.yml +++ b/modules/nf-core/upd/environment.yml @@ -1,3 +1,4 @@ +name: upd channels: - conda-forge - bioconda diff --git a/modules/nf-core/vardictjava/environment.yml b/modules/nf-core/vardictjava/environment.yml index 61b0ad23972..92d169fd8b8 100644 --- a/modules/nf-core/vardictjava/environment.yml +++ b/modules/nf-core/vardictjava/environment.yml @@ -1,3 +1,4 @@ +name: vardictjava channels: - conda-forge - bioconda diff --git a/modules/nf-core/variantbam/environment.yml b/modules/nf-core/variantbam/environment.yml index 4300f4d6d83..8aa2fb39963 100644 --- a/modules/nf-core/variantbam/environment.yml +++ b/modules/nf-core/variantbam/environment.yml @@ -1,3 +1,4 @@ +name: variantbam channels: - conda-forge - bioconda diff --git a/modules/nf-core/varlociraptor/callvariants/environment.yml b/modules/nf-core/varlociraptor/callvariants/environment.yml index bbaa4cf458e..84cd28fe86e 100644 --- a/modules/nf-core/varlociraptor/callvariants/environment.yml +++ b/modules/nf-core/varlociraptor/callvariants/environment.yml @@ -1,3 +1,4 @@ +name: varlociraptor_callvariants channels: - conda-forge - bioconda diff --git a/modules/nf-core/varlociraptor/estimatealignmentproperties/environment.yml b/modules/nf-core/varlociraptor/estimatealignmentproperties/environment.yml index bbaa4cf458e..9ff535e8fb2 100644 --- a/modules/nf-core/varlociraptor/estimatealignmentproperties/environment.yml +++ b/modules/nf-core/varlociraptor/estimatealignmentproperties/environment.yml @@ -1,3 +1,4 @@ +name: varlociraptor_estimatealignmentproperties channels: - conda-forge - bioconda diff --git a/modules/nf-core/varlociraptor/preprocess/environment.yml b/modules/nf-core/varlociraptor/preprocess/environment.yml index bbaa4cf458e..3c433c57c5f 100644 --- a/modules/nf-core/varlociraptor/preprocess/environment.yml +++ b/modules/nf-core/varlociraptor/preprocess/environment.yml @@ -1,3 +1,4 @@ +name: varlociraptor_preprocess channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcf2db/environment.yml b/modules/nf-core/vcf2db/environment.yml index 5733af7843f..51a8ab8a9b9 100644 --- a/modules/nf-core/vcf2db/environment.yml +++ b/modules/nf-core/vcf2db/environment.yml @@ -1,3 +1,4 @@ +name: vcf2db channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcf2maf/environment.yml b/modules/nf-core/vcf2maf/environment.yml index dd14050dc76..ee3f531ff47 100644 --- a/modules/nf-core/vcf2maf/environment.yml +++ b/modules/nf-core/vcf2maf/environment.yml @@ -1,3 +1,4 @@ +name: vcf2maf channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcfanno/environment.yml b/modules/nf-core/vcfanno/environment.yml index 100939af8ad..32ad1bfddbd 100644 --- a/modules/nf-core/vcfanno/environment.yml +++ b/modules/nf-core/vcfanno/environment.yml @@ -1,3 +1,4 @@ +name: vcfanno channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcflib/vcfbreakmulti/environment.yml b/modules/nf-core/vcflib/vcfbreakmulti/environment.yml index f20ccaa06f4..dc722a43f34 100644 --- a/modules/nf-core/vcflib/vcfbreakmulti/environment.yml +++ b/modules/nf-core/vcflib/vcfbreakmulti/environment.yml @@ -1,3 +1,4 @@ +name: vcflib_vcfbreakmulti channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcflib/vcffilter/environment.yml b/modules/nf-core/vcflib/vcffilter/environment.yml index f20ccaa06f4..263943bcd5a 100644 --- a/modules/nf-core/vcflib/vcffilter/environment.yml +++ b/modules/nf-core/vcflib/vcffilter/environment.yml @@ -1,3 +1,4 @@ +name: vcflib_vcffilter channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcflib/vcfuniq/environment.yml b/modules/nf-core/vcflib/vcfuniq/environment.yml index f20ccaa06f4..dff6ed89716 100644 --- a/modules/nf-core/vcflib/vcfuniq/environment.yml +++ b/modules/nf-core/vcflib/vcfuniq/environment.yml @@ -1,3 +1,4 @@ +name: vcflib_vcfuniq channels: - conda-forge - bioconda diff --git a/modules/nf-core/vcftools/environment.yml b/modules/nf-core/vcftools/environment.yml index 875817e21db..503449e833e 100644 --- a/modules/nf-core/vcftools/environment.yml +++ b/modules/nf-core/vcftools/environment.yml @@ -1,3 +1,4 @@ +name: vcftools channels: - conda-forge - bioconda diff --git a/modules/nf-core/verifybamid/verifybamid/environment.yml b/modules/nf-core/verifybamid/verifybamid/environment.yml index 54a89516efd..6de2c9603d7 100644 --- a/modules/nf-core/verifybamid/verifybamid/environment.yml +++ b/modules/nf-core/verifybamid/verifybamid/environment.yml @@ -1,3 +1,4 @@ +name: VERIFYBAMID_VERIFYBAMID channels: - conda-forge - bioconda diff --git a/modules/nf-core/verifybamid/verifybamid2/environment.yml b/modules/nf-core/verifybamid/verifybamid2/environment.yml index 37c42e311b0..b01882696d5 100644 --- a/modules/nf-core/verifybamid/verifybamid2/environment.yml +++ b/modules/nf-core/verifybamid/verifybamid2/environment.yml @@ -1,3 +1,4 @@ +name: VERIFYBAMID_VERIFYBAMID2 channels: - conda-forge - bioconda diff --git a/modules/nf-core/vg/construct/environment.yml b/modules/nf-core/vg/construct/environment.yml index 4c8fdc35c55..f18cc21c402 100644 --- a/modules/nf-core/vg/construct/environment.yml +++ b/modules/nf-core/vg/construct/environment.yml @@ -1,3 +1,4 @@ +name: vg_construct channels: - conda-forge - bioconda diff --git a/modules/nf-core/vg/deconstruct/environment.yml b/modules/nf-core/vg/deconstruct/environment.yml index a3cb854df56..36f0853b295 100644 --- a/modules/nf-core/vg/deconstruct/environment.yml +++ b/modules/nf-core/vg/deconstruct/environment.yml @@ -1,3 +1,4 @@ +name: vg_deconstruct channels: - conda-forge - bioconda diff --git a/modules/nf-core/vg/index/environment.yml b/modules/nf-core/vg/index/environment.yml index 4c8fdc35c55..6417fd696e2 100644 --- a/modules/nf-core/vg/index/environment.yml +++ b/modules/nf-core/vg/index/environment.yml @@ -1,3 +1,4 @@ +name: vg_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/vrhyme/extractunbinned/environment.yml b/modules/nf-core/vrhyme/extractunbinned/environment.yml index 0d176b8fc54..cac99a06b5f 100644 --- a/modules/nf-core/vrhyme/extractunbinned/environment.yml +++ b/modules/nf-core/vrhyme/extractunbinned/environment.yml @@ -1,3 +1,4 @@ +name: vrhyme_extractunbinned channels: - conda-forge - bioconda diff --git a/modules/nf-core/vrhyme/linkbins/environment.yml b/modules/nf-core/vrhyme/linkbins/environment.yml index 0d176b8fc54..45f42bb0d29 100644 --- a/modules/nf-core/vrhyme/linkbins/environment.yml +++ b/modules/nf-core/vrhyme/linkbins/environment.yml @@ -1,3 +1,4 @@ +name: vrhyme_linkbins channels: - conda-forge - bioconda diff --git a/modules/nf-core/vrhyme/vrhyme/environment.yml b/modules/nf-core/vrhyme/vrhyme/environment.yml index 0d176b8fc54..a90ef06d94d 100644 --- a/modules/nf-core/vrhyme/vrhyme/environment.yml +++ b/modules/nf-core/vrhyme/vrhyme/environment.yml @@ -1,3 +1,4 @@ +name: vrhyme_vrhyme channels: - conda-forge - bioconda diff --git a/modules/nf-core/vsearch/cluster/environment.yml b/modules/nf-core/vsearch/cluster/environment.yml index 4fb69be1078..965a7fab471 100644 --- a/modules/nf-core/vsearch/cluster/environment.yml +++ b/modules/nf-core/vsearch/cluster/environment.yml @@ -1,3 +1,4 @@ +name: vsearch_cluster channels: - conda-forge - bioconda diff --git a/modules/nf-core/vsearch/sintax/environment.yml b/modules/nf-core/vsearch/sintax/environment.yml index 0c0e3632010..16e8d3004f3 100644 --- a/modules/nf-core/vsearch/sintax/environment.yml +++ b/modules/nf-core/vsearch/sintax/environment.yml @@ -1,3 +1,4 @@ +name: vsearch_sintax channels: - conda-forge - bioconda diff --git a/modules/nf-core/vsearch/sort/environment.yml b/modules/nf-core/vsearch/sort/environment.yml index 0c0e3632010..dd39854ec04 100644 --- a/modules/nf-core/vsearch/sort/environment.yml +++ b/modules/nf-core/vsearch/sort/environment.yml @@ -1,3 +1,4 @@ +name: vsearch_sort channels: - conda-forge - bioconda diff --git a/modules/nf-core/vsearch/usearchglobal/environment.yml b/modules/nf-core/vsearch/usearchglobal/environment.yml index 0c0e3632010..a4f4e86251d 100644 --- a/modules/nf-core/vsearch/usearchglobal/environment.yml +++ b/modules/nf-core/vsearch/usearchglobal/environment.yml @@ -1,3 +1,4 @@ +name: vsearch_usearchglobal channels: - conda-forge - bioconda diff --git a/modules/nf-core/vt/decompose/environment.yml b/modules/nf-core/vt/decompose/environment.yml index 53749cfd3fc..6dd7d9355fc 100644 --- a/modules/nf-core/vt/decompose/environment.yml +++ b/modules/nf-core/vt/decompose/environment.yml @@ -1,3 +1,4 @@ +name: vt_decompose channels: - conda-forge - bioconda diff --git a/modules/nf-core/vt/normalize/environment.yml b/modules/nf-core/vt/normalize/environment.yml index 53749cfd3fc..8990f1b46f9 100644 --- a/modules/nf-core/vt/normalize/environment.yml +++ b/modules/nf-core/vt/normalize/environment.yml @@ -1,3 +1,4 @@ +name: vt_normalize channels: - conda-forge - bioconda diff --git a/modules/nf-core/wfmash/environment.yml b/modules/nf-core/wfmash/environment.yml index 6f2363e5808..510b9e67b33 100644 --- a/modules/nf-core/wfmash/environment.yml +++ b/modules/nf-core/wfmash/environment.yml @@ -1,3 +1,4 @@ +name: wfmash channels: - conda-forge - bioconda diff --git a/modules/nf-core/wgsim/environment.yml b/modules/nf-core/wgsim/environment.yml index af04764b95f..0f4567400b1 100644 --- a/modules/nf-core/wgsim/environment.yml +++ b/modules/nf-core/wgsim/environment.yml @@ -1,3 +1,4 @@ +name: wgsim channels: - conda-forge - bioconda diff --git a/modules/nf-core/whamg/environment.yml b/modules/nf-core/whamg/environment.yml index 4a901ff4296..e84651dbb57 100644 --- a/modules/nf-core/whamg/environment.yml +++ b/modules/nf-core/whamg/environment.yml @@ -1,3 +1,4 @@ +name: whamg channels: - conda-forge - bioconda diff --git a/modules/nf-core/windowmasker/convert/environment.yml b/modules/nf-core/windowmasker/convert/environment.yml index 842f75b9b37..d23a19713d9 100644 --- a/modules/nf-core/windowmasker/convert/environment.yml +++ b/modules/nf-core/windowmasker/convert/environment.yml @@ -1,3 +1,4 @@ +name: windowmasker_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/windowmasker/mkcounts/environment.yml b/modules/nf-core/windowmasker/mkcounts/environment.yml index 8888699f505..158874250c7 100644 --- a/modules/nf-core/windowmasker/mkcounts/environment.yml +++ b/modules/nf-core/windowmasker/mkcounts/environment.yml @@ -1,3 +1,4 @@ +name: windowmasker_mkcounts channels: - conda-forge - bioconda diff --git a/modules/nf-core/windowmasker/ustat/environment.yml b/modules/nf-core/windowmasker/ustat/environment.yml index 8888699f505..a97fdd9d270 100644 --- a/modules/nf-core/windowmasker/ustat/environment.yml +++ b/modules/nf-core/windowmasker/ustat/environment.yml @@ -1,3 +1,4 @@ +name: windowmasker_ustat channels: - conda-forge - bioconda diff --git a/modules/nf-core/wisecondorx/convert/environment.yml b/modules/nf-core/wisecondorx/convert/environment.yml index b5ef814317e..6b26f79cc5d 100644 --- a/modules/nf-core/wisecondorx/convert/environment.yml +++ b/modules/nf-core/wisecondorx/convert/environment.yml @@ -1,3 +1,4 @@ +name: wisecondorx_convert channels: - conda-forge - bioconda diff --git a/modules/nf-core/wisecondorx/gender/environment.yml b/modules/nf-core/wisecondorx/gender/environment.yml index b5ef814317e..278f19b352a 100644 --- a/modules/nf-core/wisecondorx/gender/environment.yml +++ b/modules/nf-core/wisecondorx/gender/environment.yml @@ -1,3 +1,4 @@ +name: wisecondorx_gender channels: - conda-forge - bioconda diff --git a/modules/nf-core/wisecondorx/newref/environment.yml b/modules/nf-core/wisecondorx/newref/environment.yml index b5ef814317e..bbda8113fce 100644 --- a/modules/nf-core/wisecondorx/newref/environment.yml +++ b/modules/nf-core/wisecondorx/newref/environment.yml @@ -1,3 +1,4 @@ +name: wisecondorx_newref channels: - conda-forge - bioconda diff --git a/modules/nf-core/wisecondorx/predict/environment.yml b/modules/nf-core/wisecondorx/predict/environment.yml index b5ef814317e..35d6a5e2df7 100644 --- a/modules/nf-core/wisecondorx/predict/environment.yml +++ b/modules/nf-core/wisecondorx/predict/environment.yml @@ -1,3 +1,4 @@ +name: wisecondorx_predict channels: - conda-forge - bioconda diff --git a/modules/nf-core/yahs/environment.yml b/modules/nf-core/yahs/environment.yml index 302288b1caa..8dcf601942f 100644 --- a/modules/nf-core/yahs/environment.yml +++ b/modules/nf-core/yahs/environment.yml @@ -1,3 +1,4 @@ +name: yahs channels: - conda-forge - bioconda diff --git a/modules/nf-core/yara/index/environment.yml b/modules/nf-core/yara/index/environment.yml index a5bf455217f..127f0e293fb 100644 --- a/modules/nf-core/yara/index/environment.yml +++ b/modules/nf-core/yara/index/environment.yml @@ -1,3 +1,4 @@ +name: yara_index channels: - conda-forge - bioconda diff --git a/modules/nf-core/yara/mapper/environment.yml b/modules/nf-core/yara/mapper/environment.yml index 3e3e0618516..e4d8859888f 100644 --- a/modules/nf-core/yara/mapper/environment.yml +++ b/modules/nf-core/yara/mapper/environment.yml @@ -1,3 +1,4 @@ +name: yara_mapper channels: - conda-forge - bioconda diff --git a/modules/nf-core/zip/environment.yml b/modules/nf-core/zip/environment.yml index 157fe95c01f..8104a7210b1 100644 --- a/modules/nf-core/zip/environment.yml +++ b/modules/nf-core/zip/environment.yml @@ -1,3 +1,4 @@ +name: zip channels: - conda-forge - bioconda