diff --git a/modules/nf-core/star/align/main.nf b/modules/nf-core/star/align/main.nf index e8bd647b695..e6c4443cbaf 100644 --- a/modules/nf-core/star/align/main.nf +++ b/modules/nf-core/star/align/main.nf @@ -27,6 +27,8 @@ process STAR_ALIGN { tuple val(meta), path('*Aligned.unsort.out.bam') , optional:true, emit: bam_unsorted tuple val(meta), path('*fastq.gz') , optional:true, emit: fastq tuple val(meta), path('*.tab') , optional:true, emit: tab + tuple val(meta), path('*.SJ.out.tab') , optional:true, emit: spl_junc_tab + tuple val(meta), path('*.ReadsPerGene.out.tab') , optional:true, emit: read_per_gene_tab tuple val(meta), path('*.out.junction') , optional:true, emit: junction tuple val(meta), path('*.out.sam') , optional:true, emit: sam tuple val(meta), path('*.wig') , optional:true, emit: wig @@ -87,6 +89,8 @@ process STAR_ALIGN { touch ${prefix}.unmapped_1.fastq.gz touch ${prefix}.unmapped_2.fastq.gz touch ${prefix}.tab + touch ${prefix}.SJ.out.tab + touch ${prefix}.ReadsPerGene.out.tab touch ${prefix}.Chimeric.out.junction touch ${prefix}.out.sam touch ${prefix}.Signal.UniqueMultiple.str1.out.wig