-
Notifications
You must be signed in to change notification settings - Fork 714
/
CODEOWNERS
Validating CODEOWNERS rules...
1104 lines (1104 loc) · 55.6 KB
/
CODEOWNERS
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
*.nf.test* @nf-core/nf-test
.github/workflows/test.yml @nf-core/nf-test
tags.yml @nf-core/nf-test
tests/config @nf-core/nf-test
modules/nf-core/abacas/** @joseespinosa @drpatelh
modules/nf-core/abricate/run/** @rpetit3
modules/nf-core/abricate/summary/** @rpetit3
modules/nf-core/abritamr/run/** @rpetit3
modules/nf-core/adapterremovalfixprefix/** @jfy133
modules/nf-core/adapterremoval/** @maxibor @jfy133
modules/nf-core/admixture/** @atrigila
modules/nf-core/affy/justrma/** @pinin4fjords
modules/nf-core/agat/convertspgff2gtf/** @toniher
modules/nf-core/agat/convertspgxf2gxf/** @toniher
modules/nf-core/agat/spstatistics/** @toniher
modules/nf-core/agat/sqstatbasic/** @toniher
modules/nf-core/agrvate/** @abhi18av
modules/nf-core/allelecounter/** @fullama @fbdtemme
modules/nf-core/ampcombi/** @darcy220606 @louperelo
modules/nf-core/ampir/** @jasmezz
modules/nf-core/amplify/predict/** @louperelo
modules/nf-core/amps/** @jfy133
modules/nf-core/amrfinderplus/run/** @rpetit3 @louperelo @jfy133
modules/nf-core/amrfinderplus/update/** @rpetit3
modules/nf-core/angsd/contamination/** @jbv2
modules/nf-core/angsd/docounts/** @jfy133
modules/nf-core/annotsv/annotsv/** @nvnieuwk
modules/nf-core/annotsv/installannotations/** @nvnieuwk
modules/nf-core/antismash/antismashlitedownloaddatabases/** @jasmezz
modules/nf-core/antismash/antismashlite/** @jasmezz
modules/nf-core/arcashla/extract/** @christopher-mohr
modules/nf-core/aria2/** @JoseEspinosa
modules/nf-core/ariba/getref/** @rpetit3
modules/nf-core/ariba/run/** @rpetit3
modules/nf-core/arriba/arriba/** @praveenraj2018,@rannick
modules/nf-core/artic/guppyplex/** @joseespinosa @drpatelh
modules/nf-core/artic/minion/** @joseespinosa @drpatelh
modules/nf-core/art/illumina/** @MarieLataretu
modules/nf-core/ascat/** @aasNGC @lassefolkersen @FriederikeHanssen @maxulysse @SusiJo
modules/nf-core/ashlar/** @RobJY @jmuhlich
modules/nf-core/assemblyscan/** @sateeshperi @mjcipriano
modules/nf-core/ataqv/ataqv/** @i-pletenev
modules/nf-core/ataqv/mkarv/** @bjlang
modules/nf-core/atlas/call/** @jfy133
modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/** @pinin4fjords
modules/nf-core/atlas/pmd/** @maxibor @merszym
modules/nf-core/atlas/recal/** @ltcrod
modules/nf-core/atlas/splitmerge/** @merszym
modules/nf-core/authentict/deam2cont/** @scarlhoff @StephanePeyregne
modules/nf-core/backsub/** @kbestak
modules/nf-core/bacphlip/** @CarsonJM
modules/nf-core/bakta/baktadbdownload/** @jfy133 @jasmezz
modules/nf-core/bakta/bakta/** @rpetit3 @oschwengers @jfy133
modules/nf-core/bamaligncleaner/** @jfy133
modules/nf-core/bamcmp/** @kmurat1 @sppearce
modules/nf-core/bamtools/convert/** @sguizard
modules/nf-core/bamtools/split/** @sguizard @matthdsm
modules/nf-core/bamtools/stats/** @lescai
modules/nf-core/bamutil/trimbam/** @jfy133
modules/nf-core/bandage/image/** @heuermh
modules/nf-core/barrnap/** @danilodileo
modules/nf-core/bases2fastq/** @edmundmiller
modules/nf-core/basicpy/** @FloWuenne
modules/nf-core/bbmap/align/** @erikrikarddaniel
modules/nf-core/bbmap/bbduk/** @MGordon09
modules/nf-core/bbmap/bbnorm/** @danilodileo
modules/nf-core/bbmap/bbsplit/** @joseespinosa @drpatelh
modules/nf-core/bbmap/clumpify/** @tamuanand
modules/nf-core/bbmap/index/** @daniellundin
modules/nf-core/bbmap/pileup/** @edmundmiller
modules/nf-core/bbmap/sendsketch/** @phanhung2
modules/nf-core/bcftools/annotate/** @projectoriented @ramprasadn
modules/nf-core/bcftools/call/** @abhi18av @LouisLeNezet
modules/nf-core/bcftools/concat/** @abhi18av @nvnieuwk
modules/nf-core/bcftools/consensus/** @joseespinosa @drpatelh
modules/nf-core/bcftools/convert/** @nvnieuwk @ramprasadn @atrigila
modules/nf-core/bcftools/filter/** @joseespinosa @drpatelh
modules/nf-core/bcftools/index/** @jfy133
modules/nf-core/bcftools/isec/** @joseespinosa @drpatelh
modules/nf-core/bcftools/merge/** @joseespinosa @drpatelh @nvnieuwk @ramprasadn
modules/nf-core/bcftools/mpileup/** @joseespinosa @drpatelh
modules/nf-core/bcftools/norm/** @abhi18av @ramprasadn
modules/nf-core/bcftools/pluginscatter/** @nvnieuwk
modules/nf-core/bcftools/pluginsplit/** @nvnieuwk
modules/nf-core/bcftools/query/** @abhi18av @drpatelh
modules/nf-core/bcftools/reheader/** @bjohnnyd @jemten @ramprasadn
modules/nf-core/bcftools/roh/** @ramprasadn
modules/nf-core/bcftools/sort/** @Gwennid
modules/nf-core/bcftools/split/** @matthdsm @atrigila
modules/nf-core/bcftools/stats/** @joseespinosa @drpatelh @SusiJo @TCLamnidis
modules/nf-core/bcftools/view/** @abhi18av
modules/nf-core/bcl2fastq/** @matthdsm
modules/nf-core/bclconvert/** @matthdsm
modules/nf-core/beagle5/beagle/** @ashotmarg
modules/nf-core/bedtools/bamtobed/** @yuukiiwa @drpatelh
modules/nf-core/bedtools/closest/** @nvnieuwk
modules/nf-core/bedtools/complement/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/coverage/** @priyanka-surana
modules/nf-core/bedtools/genomecov/** @edmundmiller @sruthipsuresh @drpatelh @sidorov-si @chris-cheshire
modules/nf-core/bedtools/getfasta/** @joseespinosa @drpatelh
modules/nf-core/bedtools/groupby/** @mashehu
modules/nf-core/bedtools/intersect/** @edmundmiller @sruthipsuresh @drpatelh @sidorov-si
modules/nf-core/bedtools/jaccard/** @nvnieuwk
modules/nf-core/bedtools/makewindows/** @kevbrick @nvnieuwk
modules/nf-core/bedtools/map/** @ekushele
modules/nf-core/bedtools/maskfasta/** @joseespinosa @drpatelh
modules/nf-core/bedtools/merge/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/multiinter/** @matthdsm
modules/nf-core/bedtools/shift/** @ekushele
modules/nf-core/bedtools/slop/** @edmundmiller @sruthipsuresh @drpatelh
modules/nf-core/bedtools/sort/** @edmundmiller @sruthipsuresh @drpatelh @chris-cheshire @adamrtalbot
modules/nf-core/bedtools/split/** @nvnieuwk
modules/nf-core/bedtools/subtract/** @sidorov-si
modules/nf-core/bedtools/unionbedg/** @ekushele
modules/nf-core/bioawk/** @jfy133
modules/nf-core/biobambam/bammarkduplicates2/** @muffato
modules/nf-core/biobambam/bammerge/** @matthdsm
modules/nf-core/biobambam/bamsormadup/** @matthdsm
modules/nf-core/biohansel/** @rpetit3
modules/nf-core/biscuit/align/** @njspix
modules/nf-core/biscuit/biscuitblaster/** @njspix
modules/nf-core/biscuit/bsconv/** @njspix
modules/nf-core/biscuit/epiread/** @njspix
modules/nf-core/biscuit/index/** @njspix
modules/nf-core/biscuit/mergecg/** @njspix
modules/nf-core/biscuit/pileup/** @njspix
modules/nf-core/biscuit/qc/** @njspix
modules/nf-core/biscuit/vcf2bed/** @njspix
modules/nf-core/bismark/align/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/coverage2cytosine/** @FelixKrueger @ewels
modules/nf-core/bismark/deduplicate/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/genomepreparation/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/methylationextractor/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/report/** @phue @FelixKrueger @ewels
modules/nf-core/bismark/summary/** @phue @FelixKrueger @ewels
modules/nf-core/blast/blastn/** @joseespinosa @drpatelh @vagkaratzas
modules/nf-core/blast/blastp/** @vagkaratzas
modules/nf-core/blast/makeblastdb/** @joseespinosa @drpatelh @vagkaratzas
modules/nf-core/blast/tblastn/** @yumisims @gq2 @vagkaratzas
modules/nf-core/blat/** @d-jch
modules/nf-core/bowtie2/align/** @joseespinosa @drpatelh
modules/nf-core/bowtie2/build/** @joseespinosa @drpatelh
modules/nf-core/bowtie/align/** @kevinmenden
modules/nf-core/bowtie/build/** @kevinmenden @drpatelh
modules/nf-core/bracken/bracken/** @Midnighter
modules/nf-core/bracken/combinebrackenoutputs/** @jfy133
modules/nf-core/busco/** @priyanka-surana @charles-plessy @mahesh-panchal @muffato @jvhagey
modules/nf-core/bwa/aln/** @jfy133
modules/nf-core/bwa/index/** @drpatelh @maxulysse
modules/nf-core/bwamem2/index/** @maxulysse
modules/nf-core/bwamem2/mem/** @maxulysse
modules/nf-core/bwa/mem/** @drpatelh @jeremy1805
modules/nf-core/bwameth/align/** @phue
modules/nf-core/bwameth/index/** @phue
modules/nf-core/bwa/sampe/** @jfy133
modules/nf-core/bwa/samse/** @jfy133
modules/nf-core/cadd/** @ramprasadn
modules/nf-core/calder2/** @lucananni93
modules/nf-core/canu/** @scorreard
modules/nf-core/cat/cat/** @erikrikarddaniel @FriederikeHanssen
modules/nf-core/cat/fastq/** @joseespinosa @drpatelh
modules/nf-core/cdhit/cdhitest/** @Joon-Klaps
modules/nf-core/cdhit/cdhit/** @timslittle
modules/nf-core/cellpose/** @josenimo
modules/nf-core/cellrangeratac/count/** @ggabernet @edmundmiller @heylf
modules/nf-core/cellrangeratac/mkfastq/** @ggabernet @edmundmiller @RHReynolds @heylf
modules/nf-core/cellrangeratac/mkref/** @ggabernet @heylf
modules/nf-core/cellranger/count/** @ggabernet @edmundmiller
modules/nf-core/cellranger/mkfastq/** @ggabernet @edmundmiller @RHReynolds
modules/nf-core/cellranger/mkgtf/** @ggabernet @edmundmiller
modules/nf-core/cellranger/mkref/** @ggabernet
modules/nf-core/cellranger/mkvdjref/** @ggabernet @klkeys
modules/nf-core/cellranger/multi/** @klkeys
modules/nf-core/cellranger/vdj/** @ggabernet @edmundmiller @klkeys
modules/nf-core/centrifuge/centrifuge/** @sofstam @jfy133 @sateeshperi
modules/nf-core/centrifuge/kreport/** @sofstam @jfy133
modules/nf-core/checkm/lineagewf/** @jfy133
modules/nf-core/checkm/qa/** @jfy133
modules/nf-core/checkv/downloaddatabase/** @Joon-Klaps
modules/nf-core/checkv/endtoend/** @Joon-Klaps
modules/nf-core/checkv/updatedatabase/** @Joon-Klaps
modules/nf-core/chopper/** @FynnFreyer
modules/nf-core/chromap/chromap/** @mahesh-panchal @joseespinosa
modules/nf-core/chromap/index/** @mahesh-panchal @joseespinosa
modules/nf-core/chromograph/** @ramprasadn
modules/nf-core/circexplorer2/annotate/** @BarryDigby
modules/nf-core/circexplorer2/parse/** @BarryDigby
modules/nf-core/clippy/** @marc-jones @CharlotteAnne
modules/nf-core/clonalframeml/** @rpetit3
modules/nf-core/clustalo/align/** @luisas
modules/nf-core/clustalo/guidetree/** @luisas
modules/nf-core/cmseq/polymut/** @maxibor
modules/nf-core/cnvkit/access/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/antitarget/** @adamrtalbot @priesgo @SusiJo
modules/nf-core/cnvkit/batch/** @adamrtalbot @drpatelh @fbdtemme @kaurravneet4123 @KevinMenden @lassefolkersen @MaxUlysse @priesgo @SusiJo
modules/nf-core/cnvkit/call/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/export/** @adamrtalbot @priesgo
modules/nf-core/cnvkit/genemetrics/** @adamrtalbot @marrip @priesgo
modules/nf-core/cnvkit/reference/** @adamrtalbot @priesgo @SusiJo
modules/nf-core/cnvkit/target/** @adamrtalbot @priesgo
modules/nf-core/cnvnator/cnvnator/** @ramprasadn
modules/nf-core/cnvnator/convert2vcf/** @ramprasadn
modules/nf-core/cnvpytor/callcnvs/** @sima-r
modules/nf-core/cnvpytor/histogram/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/importreaddepth/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/partition/** @sima-r @ramprasadn
modules/nf-core/cnvpytor/view/** @sima-r @ramprasadn
modules/nf-core/concoct/concoctcoveragetable/** @jfy133
modules/nf-core/concoct/concoct/** @jfy133
modules/nf-core/concoct/cutupfasta/** @jfy133
modules/nf-core/concoct/extractfastabins/** @jfy133
modules/nf-core/concoct/mergecutupclustering/** @jfy133
modules/nf-core/conifer/** @icaromsc @rpetit3
modules/nf-core/controlfreec/assesssignificance/** @FriederikeHanssen
modules/nf-core/controlfreec/freec2bed/** @FriederikeHanssen
modules/nf-core/controlfreec/freec2circos/** @FriederikeHanssen
modules/nf-core/controlfreec/freec/** @FriederikeHanssen
modules/nf-core/controlfreec/makegraph/** @FriederikeHanssen
modules/nf-core/cooler/balance/** @nservant @muffato
modules/nf-core/cooler/cload/** @jianhong @muffato
modules/nf-core/cooler/digest/** @jianhong
modules/nf-core/cooler/dump/** @jianhong @muffato
modules/nf-core/cooler/makebins/** @nservant @muffato
modules/nf-core/cooler/merge/** @jianhong
modules/nf-core/cooler/zoomify/** @jianhong
modules/nf-core/coreograph/** @arozhada @MargotCh
modules/nf-core/crisprcleanr/normalize/** @LaurenceKuhl
modules/nf-core/crumble/** @priyanka-surana
modules/nf-core/csvtk/concat/** @rpetit3
modules/nf-core/csvtk/join/** @anoronh4
modules/nf-core/csvtk/split/** @SusiJo
modules/nf-core/custom/dumpsoftwareversions/** @drpatelh @grst
modules/nf-core/custom/getchromsizes/** @tamara-hodgetts @chris-cheshire @muffato
modules/nf-core/custom/matrixfilter/** @pinin4fjords
modules/nf-core/custom/sratoolsncbisettings/** @Midnighter
modules/nf-core/custom/tabulartogseacls/** @pinin4fjords
modules/nf-core/custom/tabulartogseagct/** @pinin4fjords
modules/nf-core/cutadapt/** @drpatelh @kevinmenden
modules/nf-core/cutesv/** @christopher-hakkaart @yuukiiwa
modules/nf-core/damageprofiler/** @jfy133
modules/nf-core/dastool/dastool/** @maxibor @jfy133
modules/nf-core/dastool/fastatocontig2bin/** @maxibor @jfy133
modules/nf-core/dastool/scaffolds2bin/** @maxibor
modules/nf-core/dedup/** @jfy133
modules/nf-core/deeparg/downloaddata/** @jfy133
modules/nf-core/deeparg/predict/** @jfy133
modules/nf-core/deepbgc/download/** @louperelo
modules/nf-core/deepbgc/pipeline/** @louperelo @jfy133
modules/nf-core/deepcell/mesmer/** @migueLib @chiarasch
modules/nf-core/deeptmhmm/** @vagkaratzas
modules/nf-core/deeptools/bamcoverage/** @FriederikeHanssen @SusiJo
modules/nf-core/deeptools/computematrix/** @jeremy1805 @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/multibamsummary/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotcorrelation/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotfingerprint/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/plotheatmap/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deeptools/plotpca/** @tamara-hodgetts @chris-cheshire
modules/nf-core/deeptools/plotprofile/** @edmundmiller @drpatelh @joseespinosa
modules/nf-core/deepvariant/** @abhi18av @ramprasadn
modules/nf-core/delly/call/** @projectoriented @nvnieuwk
modules/nf-core/deseq2/differential/** @pinin4fjords
modules/nf-core/diamond/blastp/** @spficklin @jfy133
modules/nf-core/diamond/blastx/** @spficklin @jfy133 @mjamy
modules/nf-core/diamond/makedb/** @spficklin
modules/nf-core/dragmap/align/** @edmundmiller
modules/nf-core/dragmap/hashtable/** @edmundmiller
modules/nf-core/dragonflye/** @rpetit3
modules/nf-core/dshbio/exportsegments/** @heuermh
modules/nf-core/dshbio/filterbed/** @heuermh
modules/nf-core/dshbio/filtergff3/** @heuermh
modules/nf-core/dshbio/splitbed/** @heuermh
modules/nf-core/dshbio/splitgff3/** @heuermh
modules/nf-core/duphold/** @nvnieuwk
modules/nf-core/ectyper/** @rpetit3
modules/nf-core/eido/convert/** @rafalstepien
modules/nf-core/eido/validate/** @rafalstepien
modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/** @TCLamnidis
modules/nf-core/eklipse/** @Lucpen
modules/nf-core/elprep/filter/** @matthdsm
modules/nf-core/elprep/merge/** @matthdsm
modules/nf-core/elprep/split/** @matthdsm
modules/nf-core/emboss/cons/** @Joon-Klaps
modules/nf-core/emboss/revseq/** @erikrikarddaniel
modules/nf-core/emboss/seqret/** @MillironX
modules/nf-core/emmtyper/** @rpetit3
modules/nf-core/endorspy/** @aidaanva
modules/nf-core/ensemblvep/download/** @maxulysse
modules/nf-core/ensemblvep/filtervep/** @ramprasadn
modules/nf-core/ensemblvep/vep/** @maxulysse @matthdsm @nvnieuwk
modules/nf-core/entrezdirect/esearch/** @alxndrdiaz
modules/nf-core/entrezdirect/esummary/** @alxndrdiaz
modules/nf-core/entrezdirect/xtract/** @alxndrdiaz
modules/nf-core/epang/place/** @erikrikarddaniel
modules/nf-core/epang/split/** @erikrikarddaniel
modules/nf-core/expansionhunterdenovo/merge/** @nvnieuwk
modules/nf-core/expansionhunterdenovo/profile/** @nvnieuwk
modules/nf-core/expansionhunter/** @jemten
modules/nf-core/falco/** @lucacozzuto
modules/nf-core/famsa/align/** @luisas
modules/nf-core/famsa/guidetree/** @luisas
modules/nf-core/faqcs/** @mjcipriano @sateeshperi @hseabolt
modules/nf-core/fargene/** @louperelo
modules/nf-core/fastani/** @abhi18av
modules/nf-core/fastawindows/** @muffato
modules/nf-core/fastk/fastk/** @mahesh-panchal
modules/nf-core/fastk/histex/** @mahesh-panchal
modules/nf-core/fastk/merge/** @mahesh-panchal
modules/nf-core/fastp/** @drpatelh @kevinmenden
modules/nf-core/fastqc/** @drpatelh @grst @FelixKrueger
modules/nf-core/fastqscan/** @rpetit3
modules/nf-core/fasttree/** @aunderwo
modules/nf-core/fcs/fcsadaptor/** @d4straub
modules/nf-core/fcs/fcsgx/** @tillenglert
modules/nf-core/ffq/** @drpatelh
modules/nf-core/fgbio/callduplexconsensusreads/** @lescai
modules/nf-core/fgbio/callmolecularconsensusreads/** @sruthipsuresh
modules/nf-core/fgbio/fastqtobam/** @lescai @matthdsm
modules/nf-core/fgbio/filterconsensusreads/** @lescai
modules/nf-core/fgbio/groupreadsbyumi/** @lescai
modules/nf-core/fgbio/sortbam/** @sruthipsuresh
modules/nf-core/fgbio/zipperbams/** @lescai
modules/nf-core/filtlong/** @d4straub @sofstam
modules/nf-core/flash/** @Erkison
modules/nf-core/flye/** @mirpedrol
modules/nf-core/fq/generate/** @adamrtalbot
modules/nf-core/fq/lint/** @adamrtalbot
modules/nf-core/fq/subsample/** @adamrtalbot
modules/nf-core/fqtk/** @nh13 @sam-white04
modules/nf-core/freebayes/** @maxibor @FriederikeHanssen @maxulysse
modules/nf-core/freyja/boot/** @Joon-Klaps
modules/nf-core/freyja/demix/** @Joon-Klaps
modules/nf-core/freyja/update/** @Joon-Klaps
modules/nf-core/freyja/variants/** @Joon-Klaps
modules/nf-core/galah/** @prototaxites
modules/nf-core/gamma/gamma/** @sateeshperi @rastanton @jvhagey
modules/nf-core/gangstr/** @nvnieuwk
modules/nf-core/ganon/buildcustom/** @jfy133
modules/nf-core/ganon/classify/** @jfy133
modules/nf-core/ganon/report/** @jfy133
modules/nf-core/ganon/table/** @jfy133
modules/nf-core/gappa/examineassign/** @erikrikarddaniel
modules/nf-core/gappa/examinegraft/** @erikrikarddaniel
modules/nf-core/gappa/examineheattree/** @erikrikarddaniel
modules/nf-core/gatk4/annotateintervals/** @nvnieuwk
modules/nf-core/gatk4/applybqsrspark/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/applybqsr/** @yocra3 @FriederikeHanssen
modules/nf-core/gatk4/applyvqsr/** @GCJMackenzie
modules/nf-core/gatk4/asereadcounter/** @Lucpen
modules/nf-core/gatk4/baserecalibratorspark/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/baserecalibrator/** @yocra3 @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/bedtointervallist/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/calculatecontamination/** @GCJMackenzie @maxulysse
modules/nf-core/gatk4/calibratedragstrmodel/** @nvnieuwk
modules/nf-core/gatk4/cnnscorevariants/** @FriederikeHanssen
modules/nf-core/gatk4/collectreadcounts/** @nvnieuwk
modules/nf-core/gatk4/collectsvevidence/** @nvnieuwk
modules/nf-core/gatk4/combinegvcfs/** @sateeshperi @mjcipriano @hseabolt @maxulysse
modules/nf-core/gatk4/composestrtablefile/** @nvnieuwk
modules/nf-core/gatk4/condensedepthevidence/** @nvnieuwk
modules/nf-core/gatk4/createreadcountpanelofnormals/** @ramprasadn
modules/nf-core/gatk4/createsequencedictionary/** @maxulysse @ramprasadn
modules/nf-core/gatk4/createsomaticpanelofnormals/** @GCJMackenzie
modules/nf-core/gatk4/denoisereadcounts/** @ramprasadn
modules/nf-core/gatk4/determinegermlinecontigploidy/** @nvnieuwk
modules/nf-core/gatk4/estimatelibrarycomplexity/** @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/fastqtosam/** @ntoda03
modules/nf-core/gatk4/filterintervals/** @ryanjameskennedy @ViktorHy
modules/nf-core/gatk4/filtermutectcalls/** @GCJMackenzie @maxulysse @ramprasadn
modules/nf-core/gatk4/filtervarianttranches/** @FriederikeHanssen
modules/nf-core/gatk4/gatherbqsrreports/** @FriederikeHanssen
modules/nf-core/gatk4/gatherpileupsummaries/** @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/genomicsdbimport/** @GCJMackenzie
modules/nf-core/gatk4/genotypegvcfs/** @santiagorevale @maxulysse
modules/nf-core/gatk4/germlinecnvcaller/** @ryanjameskennedy @ViktorHy
modules/nf-core/gatk4/getpileupsummaries/** @GCJMackenzie
modules/nf-core/gatk4/haplotypecaller/** @suzannejin @FriederikeHanssen
modules/nf-core/gatk4/indexfeaturefile/** @santiagorevale
modules/nf-core/gatk4/intervallisttobed/** @FriederikeHanssen
modules/nf-core/gatk4/intervallisttools/** @praveenraj2018
modules/nf-core/gatk4/learnreadorientationmodel/** @GCJMackenzie
modules/nf-core/gatk4/leftalignandtrimvariants/** @adamrtalbot
modules/nf-core/gatk4/markduplicates/** @ajodeh-juma @FriederikeHanssen @maxulysse
modules/nf-core/gatk4/markduplicatesspark/** @ajodeh-juma @FriederikeHanssen @maxulysse @SusiJo
modules/nf-core/gatk4/mergebamalignment/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/mergemutectstats/** @FriederikeHanssen
modules/nf-core/gatk4/mergevcfs/** @kevinmenden
modules/nf-core/gatk4/mutect2/** @GCJMackenzie @ramprasadn
modules/nf-core/gatk4/postprocessgermlinecnvcalls/** @ryanjameskennedy
modules/nf-core/gatk4/preprocessintervals/** @ryanjameskennedy @ViktorHy @ramprasadn
modules/nf-core/gatk4/printreads/** @ramprasadn
modules/nf-core/gatk4/printsvevidence/** @nvnieuwk
modules/nf-core/gatk4/reblockgvcf/** @nvnieuwk
modules/nf-core/gatk4/revertsam/** @kevinmenden
modules/nf-core/gatk4/samtofastq/** @kevinmenden
modules/nf-core/gatk4/selectvariants/** @mjcipriano @ramprasadn
modules/nf-core/gatk4/shiftfasta/** @ramprasadn
modules/nf-core/gatk4/sitedepthtobaf/** @nvnieuwk
modules/nf-core/gatk4/splitcram/** @nvnieuwk
modules/nf-core/gatk4/splitintervals/** @nvnieuwk @ramprasadn
modules/nf-core/gatk4/splitncigarreads/** @kevinmenden
modules/nf-core/gatk4/svannotate/** @nvnieuwk
modules/nf-core/gatk4/svcluster/** @nvnieuwk
modules/nf-core/gatk4/variantfiltration/** @kevinmenden @ramprasadn
modules/nf-core/gatk4/variantrecalibrator/** @GCJMackenzie @nickhsmith
modules/nf-core/gatk/indelrealigner/** @jfy133
modules/nf-core/gatk/realignertargetcreator/** @jfy133
modules/nf-core/gatk/unifiedgenotyper/** @ilight1542 @jfy133
modules/nf-core/gawk/** @nvnieuwk
modules/nf-core/gecco/run/** @jfy133
modules/nf-core/gem2/gem2bedmappability/** @nvnieuwk
modules/nf-core/gem2/gemindexer/** @nvnieuwk
modules/nf-core/gem2/gemmappability/** @nvnieuwk
modules/nf-core/gem3/gem3indexer/** @miqalvarez
modules/nf-core/genescopefk/** @mahesh-panchal
modules/nf-core/genmap/index/** @jianhong @nvnieuwk
modules/nf-core/genmap/map/** @jianhong @nvnieuwk
modules/nf-core/genmod/annotate/** @ramprasadn
modules/nf-core/genmod/compound/** @ramprasadn
modules/nf-core/genmod/models/** @ramprasadn
modules/nf-core/genmod/score/** @ramprasadn
modules/nf-core/genomad/download/** @CarsonJM
modules/nf-core/genomad/endtoend/** @CarsonJM
modules/nf-core/genomescope2/** @mahesh-panchal
modules/nf-core/genotyphi/parse/** @rpetit3
modules/nf-core/genrich/** @JoseEspinosa @samuelruizperez
modules/nf-core/geoquery/getgeo/** @azedinez @pinin4fjords
modules/nf-core/gfaffix/** @heuermh
modules/nf-core/gfastats/** @mahesh-panchal
modules/nf-core/gfatools/gfa2fa/** @mahesh-panchal
modules/nf-core/gfatools/stat/** @mahesh-panchal
modules/nf-core/gffcompare/** @jemten
modules/nf-core/gffread/** @edmundmiller
modules/nf-core/gget/gget/** @adamrtalbot
modules/nf-core/glimpse2/chunk/** @louislenezet
modules/nf-core/glimpse2/concordance/** @louislenezet
modules/nf-core/glimpse2/ligate/** @louislenezet
modules/nf-core/glimpse2/phase/** @LouisLeNezet
modules/nf-core/glimpse2/splitreference/** @LouisLeNezet
modules/nf-core/glimpse/chunk/** @louislenezet
modules/nf-core/glimpse/concordance/** @louislenezet
modules/nf-core/glimpse/ligate/** @louislenezet
modules/nf-core/glimpse/phase/** @louislenezet
modules/nf-core/glimpse/sample/** @louislenezet
modules/nf-core/glnexus/** @ramprasadn
modules/nf-core/gnu/sort/** @DLBPointon
modules/nf-core/goat/taxonsearch/** @alxndrdiaz @muffato
modules/nf-core/goleft/indexcov/** @lindenb
modules/nf-core/goleft/indexsplit/** @matthdsm
modules/nf-core/graphmap2/align/** @yuukiiwa @drpatelh
modules/nf-core/graphmap2/index/** @yuukiiwa @drpatelh
modules/nf-core/graphtyper/genotype/** @zachary-foster
modules/nf-core/graphtyper/vcfconcatenate/** @zachary-foster
modules/nf-core/gridss/gridss/** @nvnieuwk
modules/nf-core/gsea/gsea/** @pinin4fjords
modules/nf-core/gstama/collapse/** @sguizard
modules/nf-core/gstama/merge/** @sguizard
modules/nf-core/gstama/polyacleanup/** @sguizard
modules/nf-core/gtdbtk/classifywf/** @skrakau @abhi18av
modules/nf-core/gubbins/** @avantonder
modules/nf-core/gunc/downloaddb/** @jfy133
modules/nf-core/gunc/mergecheckm/** @jfy133
modules/nf-core/gunc/run/** @jfy133
modules/nf-core/gunzip/** @joseespinosa @drpatelh @jfy133
modules/nf-core/gvcftools/extractvariants/** @nvnieuwk
modules/nf-core/hamronization/abricate/** @jasmezz
modules/nf-core/hamronization/amrfinderplus/** @louperelo
modules/nf-core/hamronization/deeparg/** @jfy133
modules/nf-core/hamronization/fargene/** @jfy133
modules/nf-core/hamronization/rgi/** @louperelo
modules/nf-core/hamronization/summarize/** @jfy133
modules/nf-core/hapibd/** @ashotmarg
modules/nf-core/haplocheck/** @lmtani
modules/nf-core/haplogrep2/classify/** @lucpen
modules/nf-core/happy/happy/** @nvnieuwk
modules/nf-core/happy/prepy/** @nvnieuwk
modules/nf-core/hicap/** @rpetit3
modules/nf-core/hicexplorer/hicpca/** @jianhong
modules/nf-core/hifiasm/** @sidorov-si @scorreard
modules/nf-core/hisat2/align/** @ntoda03 @ramprasadn
modules/nf-core/hisat2/build/** @ntoda03
modules/nf-core/hisat2/extractsplicesites/** @ntoda03 @ramprasadn
modules/nf-core/hlala/preparegraph/** @mapo9
modules/nf-core/hlala/typing/** @mapo9
modules/nf-core/hmmcopy/gccounter/** @sppearce @adamrtalbot
modules/nf-core/hmmcopy/generatemap/** @sppearce @adamrtalbot
modules/nf-core/hmmcopy/mapcounter/** @sppearce
modules/nf-core/hmmcopy/readcounter/** @sppearce
modules/nf-core/hmmer/eslalimask/** @erikrikarddaniel
modules/nf-core/hmmer/eslreformat/** @erikrikarddaniel
modules/nf-core/hmmer/hmmalign/** @erikrikarddaniel @jfy133
modules/nf-core/hmmer/hmmbuild/** @erikrikarddaniel
modules/nf-core/hmmer/hmmfetch/** @erikrikarddaniel
modules/nf-core/hmmer/hmmsearch/** @Midnighter
modules/nf-core/hmtnote/annotate/** @sysbiocoder
modules/nf-core/homer/annotatepeaks/** @drpatelh @kevinmenden
modules/nf-core/homer/findpeaks/** @edmundmiller
modules/nf-core/homer/maketagdirectory/** @edmundmiller
modules/nf-core/homer/makeucscfile/** @edmundmiller
modules/nf-core/homer/pos2bed/** @edmundmiller
modules/nf-core/hpsuissero/** @rpetit3
modules/nf-core/htseq/count/** @zehrahazalsezer
modules/nf-core/hypo/** @remiolsen
modules/nf-core/ichorcna/createpon/** @sppearce
modules/nf-core/ichorcna/run/** @sppearce
modules/nf-core/icountmini/metagene/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/peaks/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/segment/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/sigxls/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/icountmini/summary/** @marc-jones @chris-cheshire @charlotteanne
modules/nf-core/idr/** @drpatelh @joseespinosa
modules/nf-core/igv/js/** @mirpedrol
modules/nf-core/ilastik/multicut/** @FloWuenne
modules/nf-core/ilastik/pixelclassification/** @FloWuenne
modules/nf-core/instrain/compare/** @margotl9 @CarsonJM
modules/nf-core/instrain/profile/** @mrolm
modules/nf-core/interproscan/** @toniher
modules/nf-core/iphop/download/** @CarsonJM
modules/nf-core/iphop/predict/** @CarsonJM
modules/nf-core/iqtree/** @avantonder @aunderwo
modules/nf-core/islandpath/** @jvfe
modules/nf-core/ismapper/** @rpetit3
modules/nf-core/isoseq3/cluster/** @sguizard
modules/nf-core/isoseq3/refine/** @sguizard
modules/nf-core/ivar/consensus/** @andersgs @drpatelh
modules/nf-core/ivar/trim/** @andersgs @drpatelh
modules/nf-core/ivar/variants/** @andersgs @drpatelh
modules/nf-core/jasminesv/** @nvnieuwk
modules/nf-core/jupyternotebook/** @grst
modules/nf-core/kaiju/kaiju2krona/** @MillironX
modules/nf-core/kaiju/kaiju2table/** @sofstam @talnor @jfy133
modules/nf-core/kaiju/kaiju/** @talnor @sofstam @jfy133
modules/nf-core/kalign/align/** @luisas
modules/nf-core/kallistobustools/count/** @flowuenne
modules/nf-core/kallistobustools/ref/** @flowuenne
modules/nf-core/kallisto/index/** @ggabernet
modules/nf-core/kallisto/quant/** @anoronh4
modules/nf-core/kat/hist/** @mahesh-panchal
modules/nf-core/khmer/normalizebymedian/** @erikrikarddaniel
modules/nf-core/khmer/uniquekmers/** @JoseEspinosa
modules/nf-core/kleborate/** @abhi18av @rpetit3
modules/nf-core/kmcp/compute/** @sofstam
modules/nf-core/kmcp/index/** @sofstam
modules/nf-core/kmcp/merge/** @sofstam
modules/nf-core/kmcp/profile/** @sofstam
modules/nf-core/kmcp/search/** @sofstam
modules/nf-core/kofamscan/** @toniher
modules/nf-core/kraken2/kraken2/** @joseespinosa @drpatelh
modules/nf-core/krakentools/combinekreports/** @jfy133
modules/nf-core/krakentools/kreport2krona/** @MillironX
modules/nf-core/krakenuniq/build/** @jfy133
modules/nf-core/krakenuniq/download/** @jfy133
modules/nf-core/krakenuniq/preloadedkrakenuniq/** @mjamy @Midnighter
modules/nf-core/krona/kronadb/** @mjakobs
modules/nf-core/krona/ktimporttaxonomy/** @mjakobs
modules/nf-core/krona/ktimporttext/** @jianhong
modules/nf-core/krona/ktupdatetaxonomy/** @mjakobs
modules/nf-core/last/dotplot/** @charles-plessy
modules/nf-core/last/lastal/** @charles-plessy
modules/nf-core/last/lastdb/** @charles-plessy
modules/nf-core/last/mafconvert/** @aleksandrabliznina
modules/nf-core/last/mafswap/** @charles-plessy
modules/nf-core/last/postmask/** @charles-plessy
modules/nf-core/last/split/** @aleksandrabliznina
modules/nf-core/last/train/** @aleksandrabliznina
modules/nf-core/learnmsa/align/** @luisas
modules/nf-core/leehom/** @jfy133
modules/nf-core/legsta/** @rpetit3
modules/nf-core/lima/** @sguizard
modules/nf-core/limma/differential/** @pinin4fjords
modules/nf-core/lissero/** @rpetit3
modules/nf-core/lofreq/call/** @bjohnnyd
modules/nf-core/lofreq/callparallel/** @kaurravneet4123 @bjohnnyd
modules/nf-core/lofreq/filter/** @bjohnnyd
modules/nf-core/lofreq/indelqual/** @kaurravneet4123
modules/nf-core/lofreq/somatic/** @nevinwu
modules/nf-core/macrel/contigs/** @darcy220606
modules/nf-core/macs2/callpeak/** @ntoda03 @JoseEspinosa @jianhong
modules/nf-core/mafft/** @MillironX
modules/nf-core/mageck/count/** @LaurenceKuhl
modules/nf-core/mageck/mle/** @LaurenceKuhl
modules/nf-core/mageck/test/** @LaurenceKuhl
modules/nf-core/malt/build/** @jfy133
modules/nf-core/maltextract/** @jfy133
modules/nf-core/malt/run/** @jfy133
modules/nf-core/manta/convertinversion/** @FriederikeHanssen
modules/nf-core/manta/germline/** @maxulysse @ramprasadn @nvnieuwk
modules/nf-core/manta/somatic/** @FriederikeHanssen @nvnieuwk
modules/nf-core/manta/tumoronly/** @maxulysse @nvnieuwk
modules/nf-core/mapad/index/** @jch-13
modules/nf-core/mapad/map/** @jch-13
modules/nf-core/mapdamage2/** @darcy220606
modules/nf-core/mash/dist/** @rpetit3
modules/nf-core/mash/screen/** @mahesh-panchal
modules/nf-core/mash/sketch/** @thanhleviet
modules/nf-core/mashtree/** @rpetit3
modules/nf-core/maxbin2/** @jfy133
modules/nf-core/maxquant/lfq/** @veitveit
modules/nf-core/mcquant/** @FloWuenne
modules/nf-core/mcroni/** @rpetit3
modules/nf-core/md5sum/** @matthdsm
modules/nf-core/medaka/** @avantonder
modules/nf-core/megahit/** @jfy133
modules/nf-core/megan/daa2info/** @jfy133
modules/nf-core/megan/rma2info/** @jfy133
modules/nf-core/meningotype/** @rpetit3
modules/nf-core/merquryfk/katcomp/** @mahesh-panchal
modules/nf-core/merquryfk/katgc/** @mahesh-panchal
modules/nf-core/merquryfk/merquryfk/** @mahesh-panchal
modules/nf-core/merquryfk/ploidyplot/** @mahesh-panchal
modules/nf-core/merqury/** @mahesh-panchal
modules/nf-core/meryl/count/** @mahesh-panchal
modules/nf-core/meryl/histogram/** @mahesh-panchal
modules/nf-core/meryl/unionsum/** @mahesh-panchal
modules/nf-core/metabat2/jgisummarizebamcontigdepths/** @maxibor
modules/nf-core/metabat2/metabat2/** @maxibor @jfy133
modules/nf-core/metaeuk/easypredict/** @prototaxites
modules/nf-core/metaphlan3/mergemetaphlantables/** @jfy133
modules/nf-core/metaphlan3/metaphlan3/** @MGordon09
modules/nf-core/metaphlan/makedb/** @LilyAnderssonLee
modules/nf-core/metaphlan/mergemetaphlantables/** @jfy133 @LilyAnderssonLee
modules/nf-core/metaphlan/metaphlan/** @MGordon09 @LilyAnderssonLee
modules/nf-core/methyldackel/extract/** @phue
modules/nf-core/methyldackel/mbias/** @phue
modules/nf-core/midas/run/** @rpetit3
modules/nf-core/mindagap/mindagap/** @ViriatoII @flowuenne
modules/nf-core/minia/** @drpatelh @kevinmenden
modules/nf-core/miniasm/** @avantonder
modules/nf-core/minimap2/align/** @heuermh @sofstam @sateeshperi @jfy133
modules/nf-core/minimap2/index/** @yuukiiwa @drpatelh
modules/nf-core/miniprot/align/** @yumisims @muffato
modules/nf-core/miniprot/index/** @yumisims @muffato
modules/nf-core/miranda/** @BarryDigby
modules/nf-core/mitohifi/findmitoreference/** @verku
modules/nf-core/mitohifi/mitohifi/** @ksenia-krasheninnikova
modules/nf-core/mlst/** @lskatz @tseemann
modules/nf-core/mmseqs/cluster/** @Joon-Klaps
modules/nf-core/mmseqs/createdb/** @Joon-Klaps
modules/nf-core/mmseqs/createindex/** @JoseEspinosa
modules/nf-core/mmseqs/createtsv/** @Joon-Klaps
modules/nf-core/mmseqs/databases/** @prototaxites
modules/nf-core/mmseqs/easysearch/** @luisas
modules/nf-core/mmseqs/linclust/** @vagkaratzas
modules/nf-core/mmseqs/search/** @Joon-Klaps
modules/nf-core/mmseqs/tsv2exprofiledb/** @JoseEspinosa
modules/nf-core/mobsuite/recon/** @rpetit3
modules/nf-core/mosdepth/** @joseespinosa @drpatelh @ramprasadn @matthdsm
modules/nf-core/motus/downloaddb/** @jianhong
modules/nf-core/motus/merge/** @jfy133
modules/nf-core/motus/profile/** @jianhong
modules/nf-core/msisensor2/msi/** @adamrtalbot
modules/nf-core/msisensor2/scan/** @adamrtalbot
modules/nf-core/msisensor/msi/** @kevbrick
modules/nf-core/msisensorpro/msisomatic/** @FriederikeHanssen
modules/nf-core/msisensorpro/scan/** @FriederikeHanssen
modules/nf-core/msisensor/scan/** @kevbrick
modules/nf-core/mtnucratio/** @louperelo
modules/nf-core/multiqc/** @abhi18av @bunop @drpatelh @jfy133 @ewels
modules/nf-core/multivcfanalyzer/** @jfy133
modules/nf-core/mummer/** @mjcipriano @sateeshperi
modules/nf-core/muscle5/super5/** @alessiovignoli
modules/nf-core/muscle/** @MGordon
modules/nf-core/mykrobe/predict/** @rpetit3
modules/nf-core/nanocomp/** @paulwolk
modules/nf-core/nanolyse/** @yuukiiwa
modules/nf-core/nanomonsv/parse/** @awgymer
modules/nf-core/nanoplot/** @drpatelh @yuukiiwa
modules/nf-core/ncbigenomedownload/** @rpetit3
modules/nf-core/nextclade/datasetget/** @antunderwood @drpatelh
modules/nf-core/nextclade/run/** @antunderwood @drpatelh
modules/nf-core/nextgenmap/** @cmatkhan
modules/nf-core/ngmaster/** @rpetit3
modules/nf-core/ngmerge/** @charlotteanne @jsh58
modules/nf-core/ngsbits/samplegender/** @nvnieuwk
modules/nf-core/ngscheckmate/fastq/** @sppearce
modules/nf-core/ngscheckmate/ncm/** @sppearce
modules/nf-core/ngscheckmate/patterngenerator/** @sppearce
modules/nf-core/ngscheckmate/vafncm/** @sppearce
modules/nf-core/nonpareil/nonpareil/** @jfy133
modules/nf-core/nonpareil/curve/** @jfy133
modules/nf-core/nucmer/** @sateeshperi @mjcipriano
modules/nf-core/odgi/build/** @subwaystation
modules/nf-core/odgi/draw/** @subwaystation
modules/nf-core/odgi/layout/** @subwaystation
modules/nf-core/odgi/sort/** @subwaystation
modules/nf-core/odgi/squeeze/** @subwaystation
modules/nf-core/odgi/stats/** @subwaystation
modules/nf-core/odgi/unchop/** @subwaystation
modules/nf-core/odgi/view/** @subwaystation
modules/nf-core/odgi/viz/** @subwaystation
modules/nf-core/oncocnv/** @marrip
modules/nf-core/openms/decoydatabase/** @jonasscheid
modules/nf-core/optitype/** @apeltzer
modules/nf-core/paftools/sam2paf/** @DLBPointon
modules/nf-core/pairix/** @jianhong
modules/nf-core/pairtools/dedup/** @jianhong
modules/nf-core/pairtools/flip/** @jianhong
modules/nf-core/pairtools/merge/** @nservant
modules/nf-core/pairtools/parse/** @jianhong
modules/nf-core/pairtools/restrict/** @jianhong
modules/nf-core/pairtools/select/** @jianhong
modules/nf-core/pairtools/sort/** @jianhong @nservant
modules/nf-core/pairtools/stats/** @nservant
modules/nf-core/panaroo/run/** @rpetit3
modules/nf-core/pangolin/** @kevinmenden @drpatelh
modules/nf-core/parabricks/applybqsr/** @bsiranosian
modules/nf-core/parabricks/fq2bam/** @bsiranosian @adamrtalbot
modules/nf-core/paraclu/** @mashehu
modules/nf-core/paragraph/idxdepth/** @nvnieuwk
modules/nf-core/paragraph/multigrmpy/** @nvnieuwk
modules/nf-core/paragraph/vcf2paragraph/** @nvnieuwk
modules/nf-core/pasty/** @rpetit3
modules/nf-core/pbbam/pbmerge/** @sguizard
modules/nf-core/pbccs/** @sguizard
modules/nf-core/pbptyper/** @rpetit3
modules/nf-core/pear/** @mirpedrol
modules/nf-core/peddy/** @rannick
modules/nf-core/peka/** @kkuret @codeprimate123 @chris-cheshire @charlotteanne
modules/nf-core/phantompeakqualtools/** @drpatelh @edmundmiller @JoseEspinosa
modules/nf-core/phispy/** @jvfe
modules/nf-core/phyloflash/** @abhi18av
modules/nf-core/picard/addorreplacereadgroups/** @sateeshperi @mjcipriano @hseabolt @cmatKhan @muffato
modules/nf-core/picard/bedtointervallist/** @kevinmenden @matthdsm
modules/nf-core/picard/cleansam/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/collecthsmetrics/** @projectoriented @matthdsm
modules/nf-core/picard/collectinsertsizemetrics/** @FerriolCalvet
modules/nf-core/picard/collectmultiplemetrics/** @drpatelh
modules/nf-core/picard/collectrnaseqmetrics/** @anoronh4
modules/nf-core/picard/collectwgsmetrics/** @drpatelh @flowuenne @lassefolkersen @ramprasadn
modules/nf-core/picard/createsequencedictionary/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/crosscheckfingerprints/** @matthdsm
modules/nf-core/picard/fastqtosam/** @matthdsm
modules/nf-core/picard/filtersamreads/** @jfy133
modules/nf-core/picard/fixmateinformation/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/picard/liftovervcf/** @lucpen @ramprasadn
modules/nf-core/picard/markduplicates/** @drpatelh @projectoriented @ramprasadn
modules/nf-core/picard/mergesamfiles/** @drpatelh
modules/nf-core/picard/renamesampleinvcf/** @Lucpen
modules/nf-core/picard/scatterintervalsbyns/** @nvnieuwk
modules/nf-core/picard/sortsam/** @jfy133
modules/nf-core/picard/sortvcf/** @ramprasadn
modules/nf-core/pilon/** @scorreard
modules/nf-core/pindel/pindel/** @marrip
modules/nf-core/pints/caller/** @edmundmiller
modules/nf-core/pirate/** @rpetit3
modules/nf-core/plasmidfinder/** @rpetit3
modules/nf-core/plasmidid/** @joseespinosa @drpatelh
modules/nf-core/platypus/** @kubranarci
modules/nf-core/plink2/extract/** @nebfield
modules/nf-core/plink2/score/** @nebfield
modules/nf-core/plink2/vcf/** @nebfield
modules/nf-core/plink/bcf/** @atrigila
modules/nf-core/plink/exclude/** @atrigila
modules/nf-core/plink/extract/** @nebfield
modules/nf-core/plink/indep/** @atrigila
modules/nf-core/plink/indeppairwise/** @atrigila
modules/nf-core/plink/recode/** @atrigila
modules/nf-core/plink/vcf/** @Mxrcon @abhi18av
modules/nf-core/pmdtools/filter/** @alexandregilardet
modules/nf-core/pneumocat/** @rpetit3
modules/nf-core/porechop/abi/** @sofstam
modules/nf-core/porechop/porechop/** @ggabernet @jasmezz @d4straub @LaurenceKuhl @SusiJo @jonasscheid @jonoave @GokceOGUZ @jfy133
modules/nf-core/preseq/ccurve/** @drpatelh @edmundmiller
modules/nf-core/preseq/lcextrap/** @drpatelh @edmundmiller
modules/nf-core/pretextmap/** @marrip @getrudeln
modules/nf-core/pretextsnapshot/** @epaule
modules/nf-core/prinseqplusplus/** @jfy133
modules/nf-core/prodigal/** @grst
modules/nf-core/prokka/** @rpetit3
modules/nf-core/propr/logratio/** @suzannejin @oprana22
modules/nf-core/propr/propd/** @suzannejin
modules/nf-core/proteus/readproteingroups/** @WackerO
modules/nf-core/pureclip/** @charlotteanne @marcjones
modules/nf-core/purecn/coverage/** @aldosr @lbeltrame
modules/nf-core/purecn/intervalfile/** @aldosr @lbeltrame
modules/nf-core/purecn/normaldb/** @aldosr @lbeltrame
modules/nf-core/purecn/run/** @aldosr @lbeltrame
modules/nf-core/purgedups/calcuts/** @mahesh-panchal
modules/nf-core/purgedups/getseqs/** @mahesh-panchal
modules/nf-core/purgedups/histplot/** @mahesh-panchal
modules/nf-core/purgedups/pbcstat/** @mahesh-panchal
modules/nf-core/purgedups/purgedups/** @mahesh-panchal
modules/nf-core/purgedups/splitfa/** @mahesh-panchal
modules/nf-core/pycoqc/** @joseespinosa @drpatelh
modules/nf-core/pydamage/analyze/** @maxibor
modules/nf-core/pydamage/filter/** @maxibor
modules/nf-core/pyrodigal/** @louperelo
modules/nf-core/qcat/** @yuukiiwa @drpatelh
modules/nf-core/qualimap/bamqccram/** @FriederikeHanssen
modules/nf-core/qualimap/bamqc/** @phue
modules/nf-core/qualimap/rnaseq/** @FriederikeHanssen
modules/nf-core/quast/** @drpatelh @kevinmenden
modules/nf-core/quilt/quilt/** @atrigila
modules/nf-core/racon/** @avantonder
modules/nf-core/rapidnj/** @aunderwo @avantonder
modules/nf-core/rasusa/** @thanhleviet
modules/nf-core/raven/** @fmalmeida
modules/nf-core/raxmlng/** @avantonder @aunderwo
modules/nf-core/rgi/main/** @rpetit3 @jfy133
modules/nf-core/rhocall/annotate/** @ramprasadn
modules/nf-core/rmarkdownnotebook/** @grst
modules/nf-core/roary/** @rpetit3
modules/nf-core/rsem/calculateexpression/** @drpatelh @kevinmenden
modules/nf-core/rsem/preparereference/** @drpatelh @kevinmenden
modules/nf-core/rseqc/bamstat/** @drpatelh @kevinmenden
modules/nf-core/rseqc/inferexperiment/** @drpatelh @kevinmenden
modules/nf-core/rseqc/innerdistance/** @drpatelh @kevinmenden
modules/nf-core/rseqc/junctionannotation/** @drpatelh @kevinmenden
modules/nf-core/rseqc/junctionsaturation/** @drpatelh @kevinmenden
modules/nf-core/rseqc/readdistribution/** @drpatelh @kevinmenden
modules/nf-core/rseqc/readduplication/** @drpatelh @kevinmenden
modules/nf-core/rseqc/tin/** @drpatelh
modules/nf-core/rtgtools/format/** @nvnieuwk
modules/nf-core/rtgtools/pedfilter/** @nvnieuwk
modules/nf-core/rtgtools/rocplot/** @nvnieuwk
modules/nf-core/rtgtools/vcfeval/** @nvnieuwk
modules/nf-core/salmon/index/** @kevinmenden @drpatelh
modules/nf-core/salmon/quant/** @kevinmenden @drpatelh
modules/nf-core/salsa2/** @scorreard
modules/nf-core/sam2lca/analyze/** @maxibor
modules/nf-core/sambamba/flagstat/** @kubranarci
modules/nf-core/sambamba/markdup/** @BioInf2305
modules/nf-core/samblaster/** @lescai
modules/nf-core/samtools/ampliconclip/** @bjohnnyd
modules/nf-core/samtools/bam2fq/** @lescai
modules/nf-core/samtools/calmd/** @JackCurragh
modules/nf-core/samtools/cat/** @matthdsm
modules/nf-core/samtools/collatefastq/** @lescai @maxulysse @matthdsm
modules/nf-core/samtools/collate/** @priyanka-surana
modules/nf-core/samtools/convert/** @FriederikeHanssen @maxulysse
modules/nf-core/samtools/coverage/** @LouisLeNezet
modules/nf-core/samtools/depth/** @louperelo @nevinwu
modules/nf-core/samtools/dict/** @muffato
modules/nf-core/samtools/faidx/** @drpatelh @phue
modules/nf-core/samtools/fasta/** @priyanka-surana
modules/nf-core/samtools/fastq/** @priyanka-surana @suzannejin
modules/nf-core/samtools/fixmate/** @sppearce
modules/nf-core/samtools/flagstat/** @drpatelh
modules/nf-core/samtools/getrg/** @matthdsm
modules/nf-core/samtools/idxstats/** @drpatelh
modules/nf-core/samtools/import/** @matthdsm
modules/nf-core/samtools/index/** @drpatelh @maxulysse
modules/nf-core/samtools/markdup/** @priyanka-surana
modules/nf-core/samtools/merge/** @drpatelh @yuukiiwa @maxulysse @FriederikeHanssen @ramprasadn
modules/nf-core/samtools/mpileup/** @drpatelh @joseespinosa
modules/nf-core/samtools/reheader/** @louislenezet
modules/nf-core/samtools/sort/** @drpatelh
modules/nf-core/samtools/stats/** @drpatelh @FriederikeHanssen @ramprasadn
modules/nf-core/samtools/view/** @drpatelh @joseespinosa @FriederikeHanssen @priyanka-surana
modules/nf-core/scimap/mcmicro/** @luiskuhn
modules/nf-core/scoary/** @rpetit3
modules/nf-core/scramble/clusteranalysis/** @nvnieuwk
modules/nf-core/scramble/clusteridentifier/** @nvnieuwk
modules/nf-core/seacr/callpeak/** @chris-cheshire
modules/nf-core/segemehl/align/** @BarryDigby
modules/nf-core/segemehl/index/** @BarryDigby
modules/nf-core/semibin/singleeasybin/** @BigDataBiology
modules/nf-core/sentieon/** @DonFreed
modules/nf-core/sentieon/applyvarcal/** @assp8200
modules/nf-core/sentieon/bwaindex/** @drpatelh @maxulysse
modules/nf-core/sentieon/bwamem/** @asp8200
modules/nf-core/sentieon/datametrics/** @ramprasadn
modules/nf-core/sentieon/dedup/** @asp8200
modules/nf-core/sentieon/dnamodelapply/** @ramprasadn
modules/nf-core/sentieon/dnascope/** @ramprasadn
modules/nf-core/sentieon/gvcftyper/** @asp8200
modules/nf-core/sentieon/haplotyper/** @asp8200
modules/nf-core/sentieon/readwriter/** @ramprasadn
modules/nf-core/sentieon/tnhaplotyper2/** @asp8200
modules/nf-core/sentieon/tnscope/** @ramprasadn
modules/nf-core/sentieon/varcal/** @asp8200
modules/nf-core/sentieon/wgsmetrics/** @ramprasadn
modules/nf-core/seqkit/fx2tab/** @heuermh
modules/nf-core/seqkit/grep/** @Joon-Klaps
modules/nf-core/seqkit/pair/** @sateeshperi @mjcipriano @hseabolt
modules/nf-core/seqkit/replace/** @mjcipriano
modules/nf-core/seqkit/sliding/** @DLBPointon
modules/nf-core/seqkit/split2/** @FriederikeHanssen
modules/nf-core/seqkit/stats/** @Midnighter
modules/nf-core/seqkit/tab2fx/** @heuermh
modules/nf-core/seqsero2/** @rpetit3
modules/nf-core/seqtk/cutn/** @DLBPointon
modules/nf-core/seqtk/mergepe/** @emnilsson
modules/nf-core/seqtk/rename/** @hseabolt @mjcipriano @sateeshperi
modules/nf-core/seqtk/sample/** @kaurravneet4123 @sidorov-si @adamrtalbot
modules/nf-core/seqtk/seq/** @hseabolt @mjcipriano @sateeshperi
modules/nf-core/seqtk/subseq/** @sidorov-si
modules/nf-core/sequencetools/pileupcaller/** @TCLamnidis
modules/nf-core/sequenzautils/bam2seqz/** @kaurravneet4123
modules/nf-core/sequenzautils/gcwiggle/** @kaurravneet4123
modules/nf-core/seqwish/induce/** @heuermh
modules/nf-core/seroba/run/** @rpetit3
modules/nf-core/sexdeterrmine/** @TCLamnidis
modules/nf-core/sgdemux/** @nh13 @sam-white04
modules/nf-core/shapeit5/ligate/** @louislenezet
modules/nf-core/shapeit5/phasecommon/** @LouisLeNezet
modules/nf-core/shapeit5/phaserare/** @LouisLeNezet
modules/nf-core/shapeit5/switch/** @LouisLeNezet
modules/nf-core/shasta/** @fmalmeida
modules/nf-core/shasum/** @matthdsm
modules/nf-core/shigatyper/** @rpetit3
modules/nf-core/shigeifinder/** @rpetit3
modules/nf-core/shinyngs/app/** @pinin4fjords
modules/nf-core/shinyngs/staticdifferential/** @pinin4fjords
modules/nf-core/shinyngs/staticexploratory/** @pinin4fjords
modules/nf-core/shinyngs/validatefomcomponents/** @pinin4fjords
modules/nf-core/shovill/** @rpetit3
modules/nf-core/sickle/** @BioInf2305
modules/nf-core/simpleaf/index/** @fmalmeida @maxulysse @Khajidu @apeltzer @pinin4fjords
modules/nf-core/simpleaf/quant/** @fmalmeida @maxulysse @Khajidu @apeltzer @pinin4fjords
modules/nf-core/sistr/** @rpetit3
modules/nf-core/slimfastq/** @Midnighter
modules/nf-core/smncopynumbercaller/** @peterpru
modules/nf-core/smoothxg/** @heuermh, @subwaystation
modules/nf-core/smoove/call/** @scorreard @nvnieuwk
modules/nf-core/snakemake/** @adamrtalbot
modules/nf-core/snapaligner/align/** @matthdsm
modules/nf-core/snapaligner/index/** @matthdsm
modules/nf-core/sniffles/** @christopher-hakkaart @yuukiiwa
modules/nf-core/snippy/core/** @rpetit3
modules/nf-core/snippy/run/** @rpetit3
modules/nf-core/snpdists/** @abhi18av
modules/nf-core/snpeff/download/** @maxulysse
modules/nf-core/snpeff/snpeff/** @maxulysse
modules/nf-core/snpsift/annotate/** @LlaneroHiboreo
modules/nf-core/snpsift/dbnsfp/** @LlaneroHiboreo
modules/nf-core/snpsift/split/** @SusiJo @jonasscheid
modules/nf-core/snpsites/** @avantonder
modules/nf-core/somalier/ancestry/** @atrigila
modules/nf-core/somalier/extract/** @ashotmarg @nvnieuwk
modules/nf-core/somalier/relate/** @ashotmarg @nvnieuwk
modules/nf-core/sortmerna/** @drpatelh @mashehu
modules/nf-core/sourmash/compare/** @taylorreiter
modules/nf-core/sourmash/gather/** @vmikk @taylorreiter
modules/nf-core/sourmash/index/** @emnilsson
modules/nf-core/sourmash/sketch/** @Midnighter
modules/nf-core/sourmash/taxannotate/** @vmikk @taylorreiter
modules/nf-core/spaceranger/count/** @grst
modules/nf-core/spaceranger/mkgtf/** @grst
modules/nf-core/spaceranger/mkref/** @grst
modules/nf-core/spades/** @JoseEspinosa @drpatelh @d4straub
modules/nf-core/spatyper/** @rpetit3
modules/nf-core/spring/compress/** @xec-cm
modules/nf-core/spring/decompress/** @xec-cm
modules/nf-core/sratools/fasterqdump/** @Midnighter
modules/nf-core/sratools/prefetch/** @Midnighter
modules/nf-core/srst2/srst2/** @jvhagey
modules/nf-core/ssuissero/** @rpetit3
modules/nf-core/stadeniolib/scramble/** @matthdsm
modules/nf-core/staphopiasccmec/** @rpetit3
modules/nf-core/star/align/** @kevinmenden @drpatelh @praveenraj2018
modules/nf-core/star/genomegenerate/** @kevinmenden @drpatelh
modules/nf-core/star/starsolo/** @kevinmenden @ggabernet @grst @fmalmeida @rhreynolds @apeltzer @vivian-chen16 @maxulysse @joaodemeirelles
modules/nf-core/stecfinder/** @rpetit3
modules/nf-core/stitch/** @saulpierotti
modules/nf-core/stranger/** @ljmesi
modules/nf-core/strelka/germline/** @arontommi
modules/nf-core/strelka/somatic/** @drpatelh
modules/nf-core/stringtie/merge/** @yuukiiwa
modules/nf-core/stringtie/stringtie/** @drpatelh
modules/nf-core/subread/featurecounts/** @ntoda03
modules/nf-core/survivor/filter/** @LlaneroHiboreo
modules/nf-core/survivor/merge/** @nvnieuwk
modules/nf-core/survivor/simsv/** @nvnieuwk
modules/nf-core/svaba/** @kubranarci
modules/nf-core/svdb/merge/** @ramprasadn
modules/nf-core/svdb/query/** @ramprasadn
modules/nf-core/svtk/baftest/** @nvnieuwk
modules/nf-core/svtk/countsvtypes/** @nvnieuwk
modules/nf-core/svtk/rdtest2vcf/** @nvnieuwk
modules/nf-core/svtk/standardize/** @nvnieuwk
modules/nf-core/svtk/vcf2bed/** @nvnieuwk
modules/nf-core/svtyper/svtyper/** @kubranarci
modules/nf-core/tabix/bgzip/** @joseespinosa @drpatelh @maxulysse @nvnieuwk
modules/nf-core/tabix/bgziptabix/** @maxulysse @DLBPointon
modules/nf-core/tabix/tabix/** @joseespinosa @drpatelh @maxulysse
modules/nf-core/tailfindr/** @lucacozzuto
modules/nf-core/taxpasta/merge/** @sofstam @jfy133
modules/nf-core/taxpasta/standardise/** @Midnighter
modules/nf-core/tbprofiler/profile/** @rpetit3
modules/nf-core/tcoffee/align/** @luisas
modules/nf-core/tiara/tiara/** @prototaxites
modules/nf-core/tiddit/cov/** @projectoriented @ramprasadn
modules/nf-core/tiddit/sv/** @maxulysse
modules/nf-core/topas/gencons/** @aidaanva
modules/nf-core/transdecoder/longorf/** @Danilo2771
modules/nf-core/transdecoder/predict/** @Danilo2771
modules/nf-core/trimgalore/** @drpatelh @FelixKrueger
modules/nf-core/trimmomatic/** @alyssa-ab
modules/nf-core/trinity/** @timslittle
modules/nf-core/truvari/bench/** @nvnieuwk
modules/nf-core/ucsc/bedclip/** @drpatelh
modules/nf-core/ucsc/bedgraphtobigwig/** @drpatelh
modules/nf-core/ucsc/bedtobigbed/** @drpatelh
modules/nf-core/ucsc/bigwigaverageoverbed/** @jianhong
modules/nf-core/ucsc/gtftogenepred/** @BarryDigby @anoronh4
modules/nf-core/ucsc/liftover/** @nebfield
modules/nf-core/ucsc/wigtobigwig/** @jianhong @projectoriented
modules/nf-core/ultra/align/** @sguizard
modules/nf-core/ultra/index/** @sguizard
modules/nf-core/ultra/pipeline/** @sguizard @lassefolkersen @ksahlin