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BUSCO batch mode #484

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prototaxites opened this issue Aug 1, 2023 · 0 comments
Open

BUSCO batch mode #484

prototaxites opened this issue Aug 1, 2023 · 0 comments
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enhancement New feature or request

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@prototaxites
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Description of feature

BUSCO has a batch mode, where the input to the BUSCO call is a directory of fasta files rather than an individual file. As binning can produce a lot of files (esp. with concoct, which bins every contig), switching BUSCO to batch mode could save significantly on the total number of jobs that are submitted (my current mag run has found 11,000 bins...).

Would probably require significant re-tooling of the BUSCO process, though!
@prototaxites prototaxites added the enhancement New feature or request label Aug 1, 2023
@dialvarezs dialvarezs mentioned this issue Jan 2, 2025
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