From dbe49fe704e3f0baaa5c60e198ebd8ba268d2b06 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Tue, 29 Oct 2024 15:05:54 +0100
Subject: [PATCH] Add sapces to MEGAHIT options to stop breaking args list

---
 conf/modules.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/modules.config b/conf/modules.config
index 0fbea292..d6ee1d73 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -257,7 +257,7 @@ process {
     }
 
     withName: MEGAHIT {
-        ext.args   = { params.megahit_options ? params.megahit_options + "-m ${task.memory.toBytes()}" : "-m ${task.memory.toBytes()}" }
+        ext.args   = { params.megahit_options ? params.megahit_options + " -m ${task.memory.toBytes()}" : " -m ${task.memory.toBytes()}" }
         ext.prefix = { "MEGAHIT-${meta.id}" }
         publishDir = [path: { "${params.outdir}/Assembly/MEGAHIT" }, mode: params.publish_dir_mode, pattern: "*.{fa.gz,log}"]
     }