From 91bdb76b49fa7802dcf88fdd45a52100df90e7b4 Mon Sep 17 00:00:00 2001
From: Nicolas Servant <nicolas.servant@curie.fr>
Date: Thu, 18 Jul 2024 16:47:12 +0200
Subject: [PATCH] [DOC] update

---
 docs/usage.md | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/docs/usage.md b/docs/usage.md
index f596f38..50fe02e 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -623,7 +623,12 @@ Several resolutions can be specified (comma-separeted). Default: '250000'
 
 ### Compartment calling
 
-Call open/close compartments for each chromosome, using the `cooltools` command.
+Call open/close compartments for each chromosome, using the `cooltools` or `calder2` tools.
+
+#### `--compartments_caller`
+
+Compartments calling can be performed with either `cooltools`
+or `calder2`. Multiple choices are possible (comma-separated).
 
 #### `--res_compartments`