Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

eager is not compatible with Nextflow 21.04 #741

Closed
jfy133 opened this issue May 6, 2021 · 2 comments
Closed

eager is not compatible with Nextflow 21.04 #741

jfy133 opened this issue May 6, 2021 · 2 comments
Labels
bug Something isn't working pending Addressed on branch waiting for related PR

Comments

@jfy133
Copy link
Member

jfy133 commented May 6, 2021

The following error is found on start up

:dna: 21:10:48 with 6GiB/15GiB in eager/tests on  bcftools [!] ✖  nextflow run nf-core/eager -r 2.3.4 -profile conda,test_tsv --run_genotyping --genotyping_tool 'ug' --run_bcftools_stats --run_multivcfanalyzer --run_vcf2genome -with-tower
N E X T F L O W  ~  version 21.04.0
Launching `nf-core/eager` [trusting_stonebraker] - revision: 10bfbdff86 [2.3.4]
Unknown method invocation `isEmpty` on Boolean type

Possibly related to: nf-core/tools#992 (comment)

Should change all empty strings to null, and check validations still work.

@jfy133 jfy133 added the bug Something isn't working label May 6, 2021
@jfy133
Copy link
Member Author

jfy133 commented May 7, 2021

Ok actually seems to be with the -profile conda, but should do clean up anyway

@jfy133
Copy link
Member Author

jfy133 commented May 12, 2021

This was a bug (I made ) in the template . Should be fixed in the template merge of tools 1.14

@jfy133 jfy133 added the pending Addressed on branch waiting for related PR label May 12, 2021
@jfy133 jfy133 added this to the 2.3.5 patch release milestone May 12, 2021
@jfy133 jfy133 closed this as completed May 14, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working pending Addressed on branch waiting for related PR
Projects
None yet
Development

No branches or pull requests

1 participant