diff --git a/phylogenetic/build-configs/ci/config.yaml b/phylogenetic/build-configs/ci/config.yaml index b721542..6f90bd9 100644 --- a/phylogenetic/build-configs/ci/config.yaml +++ b/phylogenetic/build-configs/ci/config.yaml @@ -2,7 +2,7 @@ custom_rules: - build-configs/ci/copy_example_data.smk reference: "defaults/reference.fasta" -genemap: "defaults/genemap.gff" +genome_annotation: "defaults/genome_annotation.gff3" genbank_reference: "defaults/reference.gb" include: "defaults/hmpxv1/include.txt" clades: "defaults/clades.tsv" diff --git a/phylogenetic/defaults/exclude_accessions.txt b/phylogenetic/defaults/exclude_accessions.txt index f3866b1..ef71b8c 100644 --- a/phylogenetic/defaults/exclude_accessions.txt +++ b/phylogenetic/defaults/exclude_accessions.txt @@ -75,7 +75,4 @@ PP098578 HM172544 # cidofovir-resistant lab strain that is derived from DQ011155 (h/t Andrew Rambaut) -TMP0003 # Overdiverged 23MPX1786C -TMP0045 # Overdiverged RDC-NKV-GOM-MPOX-004 - NC_003310 # Overdiverged RefSeq NC_003310 diff --git a/phylogenetic/defaults/genome_annotation.gff3 b/phylogenetic/defaults/genome_annotation.gff3 new file mode 100644 index 0000000..432d546 --- /dev/null +++ b/phylogenetic/defaults/genome_annotation.gff3 @@ -0,0 +1,391 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_063383.1 1 197209 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=10244 +NC_063383.1 RefSeq region 1 197209 . + . ID=NC_063383.1:1..197209;Dbxref=taxon:10244;collection-date=2018-08;country=Nigeria: Rivers State;gbkey=Src;genome=genomic;genotype=MPXV clade 2;isolate=MPXV-M5312_HM12_Rivers;mol_type=genomic DNA;nat-host=Homo sapiens +NC_063383.1 RefSeq long_terminal_repeat 1 6422 . - . ID=id-NC_063383.1:1..6422;gbkey=repeat_region;rpt_type=long_terminal_repeat +NC_063383.1 RefSeq gene 835 1575 . - . ID=gene-NBT03_gp001;Dbxref=GeneID:72551607;Name=OPG001;gbkey=Gene;gene=OPG001;gene_biotype=protein_coding;locus_tag=NBT03_gp001;old_locus_tag=MPXV-M5312_HM12_Rivers-001 +NC_063383.1 RefSeq CDS 835 1575 . - 0 ID=cds-YP_010377002.1;Parent=gene-NBT03_gp001;Dbxref=GenBank:YP_010377002.1,GeneID:72551607;Name=OPG001;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp001%3B Chemokine binding protein (Cop-C23L)%3B most abundant secreted protein%3B CC-chemokine binding%3B similar to VACV-WR J1L and VACV-Cop C23L;gbkey=CDS;gene=OPG001;locus_tag=NBT03_gp001;product=Chemokine binding protein;protein_id=YP_010377002.1 +NC_063383.1 RefSeq gene 1702 2751 . - . ID=gene-NBT03_gp002;Dbxref=GeneID:72551418;Name=OPG002;gbkey=Gene;gene=OPG002;gene_biotype=protein_coding;locus_tag=NBT03_gp002;old_locus_tag=MPXV-M5312_HM12_Rivers-002 +NC_063383.1 RefSeq CDS 1702 2751 . - 0 ID=cds-YP_010377003.1;Parent=gene-NBT03_gp002;Dbxref=GenBank:YP_010377003.1,GeneID:72551418;Name=OPG002;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: NBT03_gp002%3B TNF receptor (CrmB)%3B similar to VACV-WR J2L and VACV-Cop C22L;gbkey=CDS;gene=OPG002;locus_tag=NBT03_gp002;product=Crm-B secreted TNF-alpha-receptor-like protein;protein_id=YP_010377003.1 +NC_063383.1 RefSeq gene 2841 4607 . - . ID=gene-NBT03_gp003;Dbxref=GeneID:72551419;Name=OPG003;gbkey=Gene;gene=OPG003;gene_biotype=protein_coding;locus_tag=NBT03_gp003;old_locus_tag=MPXV-M5312_HM12_Rivers-003 +NC_063383.1 RefSeq CDS 2841 4607 . - 0 ID=cds-YP_010377004.1;Parent=gene-NBT03_gp003;Dbxref=GenBank:YP_010377004.1,GeneID:72551419;Name=OPG003;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp003%3B Ankyrin%3B similar to VACV-WR J3L and VACV-Cop C19L;gbkey=CDS;gene=OPG003;locus_tag=NBT03_gp003;product=Ankyrin repeat protein (25);protein_id=YP_010377004.1 +NC_063383.1 RefSeq gene 4843 6156 . - . ID=gene-NBT03_gp004;Dbxref=GeneID:72551420;Name=OPG015;gbkey=Gene;gene=OPG015;gene_biotype=protein_coding;locus_tag=NBT03_gp004;old_locus_tag=MPXV-M5312_HM12_Rivers-004 +NC_063383.1 RefSeq CDS 4843 6156 . - 0 ID=cds-YP_010377005.1;Parent=gene-NBT03_gp004;Dbxref=GenBank:YP_010377005.1,GeneID:72551420;Name=OPG015;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp004%3B Ankyrin%3B similar to VACV-WR D1L and CPXV-017;gbkey=CDS;gene=OPG015;locus_tag=NBT03_gp004;product=Ankyrin repeat protein (39);protein_id=YP_010377005.1 +NC_063383.1 RefSeq sequence_feature 6270 6419 . - . ID=id-NC_063383.1:6270..6419;exon_number=OPG016;gbkey=misc_feature;number=OPG016 +NC_063383.1 RefSeq sequence_feature 6444 6885 . - . ID=id-NC_063383.1:6444..6885;exon_number=OPG017;gbkey=misc_feature;number=OPG017 +NC_063383.1 RefSeq sequence_feature 6966 7463 . - . ID=id-NC_063383.1:6966..7463;exon_number=OPG018;gbkey=misc_feature;number=OPG018 +NC_063383.1 RefSeq gene 7580 8008 . + . ID=gene-NBT03_gp005;Dbxref=GeneID:72551421;Name=OPG019;gbkey=Gene;gene=OPG019;gene_biotype=protein_coding;locus_tag=NBT03_gp005;old_locus_tag=MPXV-M5312_HM12_Rivers-006 +NC_063383.1 RefSeq CDS 7580 8008 . + 0 ID=cds-YP_010377006.1;Parent=gene-NBT03_gp005;Dbxref=GenBank:YP_010377006.1,GeneID:72551421;Name=OPG019;Note=Taxonomic breadth: chordopoxvirinae%3B secreted growth factor Secreted EGF-like protein%3B similar to VACV-WR D3R and VACV-Cop C11R;gbkey=CDS;gene=OPG019;locus_tag=NBT03_gp005;product=EGF-like domain protein;protein_id=YP_010377006.1 +NC_063383.1 RefSeq sequence_feature 8136 9102 . - . ID=id-NC_063383.1:8136..9102;exon_number=OPG020;gbkey=misc_feature;number=OPG020 +NC_063383.1 RefSeq gene 9587 10315 . + . ID=gene-NBT03_gp006;Dbxref=GeneID:72551422;Name=OPG021;gbkey=Gene;gene=OPG021;gene_biotype=protein_coding;locus_tag=NBT03_gp006;old_locus_tag=MPXV-M5312_HM12_Rivers-008 +NC_063383.1 RefSeq CDS 9587 10315 . + 0 ID=cds-YP_010377007.1;Parent=gene-NBT03_gp006;Dbxref=GenBank:YP_010377007.1,GeneID:72551422;Name=OPG021;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp008%3B Zinc finger-like protein%3B zinc binding%3B virosome localization%3B virulence factor%3B inhibition of apoptosis induced by UV irradiation%3B similar to VACV-WR D5R;gbkey=CDS;gene=OPG021;locus_tag=NBT03_gp006;product=Zinc finger-like protein (2);protein_id=YP_010377007.1 +NC_063383.1 RefSeq gene 10478 10858 . - . ID=gene-NBT03_gp007;Dbxref=GeneID:72551423;Name=OPG022;gbkey=Gene;gene=OPG022;gene_biotype=protein_coding;locus_tag=NBT03_gp007;old_locus_tag=MPXV-M5312_HM12_Rivers-009 +NC_063383.1 RefSeq CDS 10478 10858 . - 0 ID=cds-YP_010377008.1;Parent=gene-NBT03_gp007;Dbxref=GenBank:YP_010377008.1,GeneID:72551423;Name=OPG022;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp009%3B secreted IL-18 binding protein%3B Soluble IL-18 binding protein (Bsh-D7L)%3B similar to VACV-WR D6L;gbkey=CDS;gene=OPG022;locus_tag=NBT03_gp007;product=Interleukin-18-binding protein;protein_id=YP_010377008.1 +NC_063383.1 RefSeq gene 10918 12900 . - . ID=gene-NBT03_gp008;Dbxref=GeneID:72551424;Name=OPG023;gbkey=Gene;gene=OPG023;gene_biotype=protein_coding;locus_tag=NBT03_gp008;old_locus_tag=MPXV-M5312_HM12_Rivers-010 +NC_063383.1 RefSeq CDS 10918 12900 . - 0 ID=cds-YP_010377009.1;Parent=gene-NBT03_gp008;Dbxref=GenBank:YP_010377009.1,GeneID:72551424;Name=OPG023;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp010%3B host range%3B ankyrin-like%3B Ankyrin/Host Range (Bang-D8L)%3B similar to VACV-WR D7L;gbkey=CDS;gene=OPG023;locus_tag=NBT03_gp008;product=Ankyrin repeat protein (2);protein_id=YP_010377009.1 +NC_063383.1 RefSeq gene 13034 13228 . - . ID=gene-NBT03_gp009;Dbxref=GeneID:72551425;Name=OPG024;gbkey=Gene;gene=OPG024;gene_biotype=protein_coding;locus_tag=NBT03_gp009;old_locus_tag=MPXV-M5312_HM12_Rivers-011 +NC_063383.1 RefSeq CDS 13034 13228 . - 0 ID=cds-YP_010377010.1;Parent=gene-NBT03_gp009;Dbxref=GenBank:YP_010377010.1,GeneID:72551425;Name=OPG024;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp011%3B ANK-containing protein%3B similar to VACV-WR D8L;gbkey=CDS;gene=OPG024;locus_tag=NBT03_gp009;product=retroviral pseudoprotease-like protein;protein_id=YP_010377010.1 +NC_063383.1 RefSeq gene 13375 15267 . - . ID=gene-NBT03_gp010;Dbxref=GeneID:72551426;Name=OPG025;gbkey=Gene;gene=OPG025;gene_biotype=protein_coding;locus_tag=NBT03_gp010;old_locus_tag=MPXV-M5312_HM12_Rivers-012 +NC_063383.1 RefSeq CDS 13375 15267 . - 0 ID=cds-YP_010377011.1;Parent=gene-NBT03_gp010;Dbxref=GenBank:YP_010377011.1,GeneID:72551426;Name=OPG025;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp012%3B ankyrin-like%3B Type I IFN resistance%3B similar to VACV-WR D9L and VACV-Cop C9L;gbkey=CDS;gene=OPG025;locus_tag=NBT03_gp010;product=Ankyrin repeat protein (14);protein_id=YP_010377011.1 +NC_063383.1 RefSeq sequence_feature 15310 15854 . - . ID=id-NC_063383.1:15310..15854;exon_number=OPG026;gbkey=misc_feature;number=OPG026 +NC_063383.1 RefSeq gene 15925 16377 . - . ID=gene-NBT03_gp011;Dbxref=GeneID:72551427;Name=OPG027;gbkey=Gene;gene=OPG027;gene_biotype=protein_coding;locus_tag=NBT03_gp011;old_locus_tag=MPXV-M5312_HM12_Rivers-013 +NC_063383.1 RefSeq CDS 15925 16377 . - 0 ID=cds-YP_010377012.1;Parent=gene-NBT03_gp011;Dbxref=GenBank:YP_010377012.1,GeneID:72551427;Name=OPG027;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp013%3B host range%3B Type 1 IFN inhibitor%3B similar to VACV-WR D10L and VACV-Cop C7L;gbkey=CDS;gene=OPG027;locus_tag=NBT03_gp011;product=Host range protein;protein_id=YP_010377012.1 +NC_063383.1 RefSeq gene 16602 17069 . - . ID=gene-NBT03_gp012;Dbxref=GeneID:72551428;Name=OPG029;gbkey=Gene;gene=OPG029;gene_biotype=protein_coding;locus_tag=NBT03_gp012;old_locus_tag=MPXV-M5312_HM12_Rivers-014 +NC_063383.1 RefSeq CDS 16602 17069 . - 0 ID=cds-YP_010377013.1;Parent=gene-NBT03_gp012;Dbxref=GenBank:YP_010377013.1,GeneID:72551428;Name=OPG029;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp014%3B Putative tlr signaling inhibitor%2C IFN-beta inhibitor%3B similar to VACV-WR D11L and VACV-Cop C6L;gbkey=CDS;gene=OPG029;locus_tag=NBT03_gp012;product=Bcl-2-like protein;protein_id=YP_010377013.1 +NC_063383.1 RefSeq gene 17213 17833 . - . ID=gene-NBT03_gp013;Dbxref=GeneID:72551429;Name=OPG030;gbkey=Gene;gene=OPG030;gene_biotype=protein_coding;locus_tag=NBT03_gp013;old_locus_tag=MPXV-M5312_HM12_Rivers-015 +NC_063383.1 RefSeq CDS 17213 17833 . - 0 ID=cds-YP_010377014.1;Parent=gene-NBT03_gp013;Dbxref=GenBank:YP_010377014.1,GeneID:72551429;Name=OPG030;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp015%3B BTB domain of kelch-like protein%3B Kelch-like protein%3B similar to VACV-WR D12L and VACV-Cop C5L;gbkey=CDS;gene=OPG030;locus_tag=NBT03_gp013;product=Kelch-like protein (1);protein_id=YP_010377014.1 +NC_063383.1 RefSeq gene 17878 18828 . - . ID=gene-NBT03_gp014;Dbxref=GeneID:72551430;Name=OPG031;gbkey=Gene;gene=OPG031;gene_biotype=protein_coding;locus_tag=NBT03_gp014;old_locus_tag=MPXV-M5312_HM12_Rivers-016 +NC_063383.1 RefSeq CDS 17878 18828 . - 0 ID=cds-YP_010377015.1;Parent=gene-NBT03_gp014;Dbxref=GenBank:YP_010377015.1,GeneID:72551430;Name=OPG031;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp016%3B IL-1 receptor antagonist%3B similar to VACV-WR D13L and VACV-Cop C10L;gbkey=CDS;gene=OPG031;locus_tag=NBT03_gp014;product=C4L/C10L-like family protein;protein_id=YP_010377015.1 +NC_063383.1 RefSeq sequence_feature 18902 19288 . - . ID=id-NC_063383.1:18902..19288;exon_number=OPG033;gbkey=misc_feature;number=OPG033 +NC_063383.1 RefSeq gene 19361 20005 . - . ID=gene-NBT03_gp015;Dbxref=GeneID:72551431;Name=OPG034;gbkey=Gene;gene=OPG034;gene_biotype=protein_coding;locus_tag=NBT03_gp015;old_locus_tag=MPXV-M5312_HM12_Rivers-018 +NC_063383.1 RefSeq CDS 19361 20005 . - 0 ID=cds-YP_010377017.1;Parent=gene-NBT03_gp015;Dbxref=GenBank:YP_010377017.1,GeneID:72551431;Name=OPG034;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp022%3B Putative TLR signalling inhibitor%3B start of ORF is missing approx. 18 AA compared to CPXVs%3B similar to VACV-WR D19L and VACV-Cop C1L;gbkey=CDS;gene=OPG034;locus_tag=NBT03_gp015;product=Bcl-2-like protein;protein_id=YP_010377017.1 +NC_063383.1 RefSeq gene 20051 20404 . - . ID=gene-NBT03_gp016;Dbxref=GeneID:72551432;Name=OPG035;gbkey=Gene;gene=OPG035;gene_biotype=protein_coding;locus_tag=NBT03_gp016;old_locus_tag=MPXV-M5312_HM12_Rivers-019 +NC_063383.1 RefSeq CDS 20051 20404 . - 0 ID=cds-YP_010377018.1;Parent=gene-NBT03_gp016;Dbxref=GenBank:YP_010377018.1,GeneID:72551432;Name=OPG035;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp023%3B secreted virulence factor%3B Putative tlr signaling inhibitor%3B Anti-apoptotic Bcl-2-like protein%3B similar to VACV-WR P1L and VACV-Cop N1L;gbkey=CDS;gene=OPG035;locus_tag=NBT03_gp016;product=Bcl-2-like protein;protein_id=YP_010377018.1 +NC_063383.1 RefSeq gene 20531 21064 . - . ID=gene-NBT03_gp017;Dbxref=GeneID:72551433;Name=OPG036;gbkey=Gene;gene=OPG036;gene_biotype=protein_coding;locus_tag=NBT03_gp017;old_locus_tag=MPXV-M5312_HM12_Rivers-020 +NC_063383.1 RefSeq CDS 20531 21064 . - 0 ID=cds-YP_010377019.1;Parent=gene-NBT03_gp017;Dbxref=GenBank:YP_010377019.1,GeneID:72551433;Name=OPG036;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp024%3B Alpha amanatin target protein%3B Putative tlr signaling inhibitor%3B similar to VACV-WR P2L and VACV-Cop #N2L;gbkey=CDS;gene=OPG036;locus_tag=NBT03_gp017;product=Bcl-2-like protein;protein_id=YP_010377019.1 +NC_063383.1 RefSeq gene 21105 22433 . - . ID=gene-NBT03_gp018;Dbxref=GeneID:72551434;Name=OPG037;gbkey=Gene;gene=OPG037;gene_biotype=protein_coding;locus_tag=NBT03_gp018;old_locus_tag=MPXV-M5312_HM12_Rivers-021 +NC_063383.1 RefSeq CDS 21105 22433 . - 0 ID=cds-YP_010377020.1;Parent=gene-NBT03_gp018;Dbxref=GenBank:YP_010377020.1,GeneID:72551434;Name=OPG037;Note=Taxonomic breadth: orthopoxvirus%3B Old product: MPXVgp025%3B ankyrin-like%3B ANK-containing protein%3B apoptosis inhibitor%3B start of ORF is missing approx. 31 AA compared to CPXVs%3B similar to VACV-WR O1L and VACV-Cop M1L;gbkey=CDS;gene=OPG037;locus_tag=NBT03_gp018;product=Ankyrin-like protein (1);protein_id=YP_010377020.1 +NC_063383.1 RefSeq gene 22497 23159 . - . ID=gene-NBT03_gp019;Dbxref=GeneID:72551435;Name=OPG038;gbkey=Gene;gene=OPG038;gene_biotype=protein_coding;locus_tag=NBT03_gp019;old_locus_tag=MPXV-M5312_HM12_Rivers-022 +NC_063383.1 RefSeq CDS 22497 23159 . - 0 ID=cds-YP_010377021.1;Parent=gene-NBT03_gp019;Dbxref=GenBank:YP_010377021.1,GeneID:72551435;Name=OPG038;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp026%3B NFkB inhibitor%3B similar to VACV-WR O2L and VACV-Cop M2L;gbkey=CDS;gene=OPG038;locus_tag=NBT03_gp019;product=NFkB inhibitor;protein_id=YP_010377021.1 +NC_063383.1 RefSeq gene 23264 24118 . - . ID=gene-NBT03_gp020;Dbxref=GeneID:72551436;Name=OPG039;gbkey=Gene;gene=OPG039;gene_biotype=protein_coding;locus_tag=NBT03_gp020;old_locus_tag=MPXV-M5312_HM12_Rivers-023 +NC_063383.1 RefSeq CDS 23264 24118 . - 0 ID=cds-YP_010377022.1;Parent=gene-NBT03_gp020;Dbxref=GenBank:YP_010377022.1,GeneID:72551436;Name=OPG039;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp027%3B host range%3B ankyrin-like%3B Ankyrin/NFkB inhibitor%3B similar to VACV-WR C1L and VACV-Cop K1L;gbkey=CDS;gene=OPG039;locus_tag=NBT03_gp020;product=Ankyrin-like protein (3);protein_id=YP_010377022.1 +NC_063383.1 RefSeq gene 24351 25478 . - . ID=gene-NBT03_gp021;Dbxref=GeneID:72551437;Name=OPG040;gbkey=Gene;gene=OPG040;gene_biotype=protein_coding;locus_tag=NBT03_gp021;old_locus_tag=MPXV-M5312_HM12_Rivers-024 +NC_063383.1 RefSeq CDS 24351 25478 . - 0 ID=cds-YP_010377023.1;Parent=gene-NBT03_gp021;Dbxref=GenBank:YP_010377023.1,GeneID:72551437;Name=OPG040;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp028%3B serine protease inhibitor-like%2C SPI-3%3B inhibition of the ability of infected cells to fuse%3B Serpin 1%2C2%2C3%3B similar to VACV-WR C2L and VACV-Cop K2L;gbkey=CDS;gene=OPG040;locus_tag=NBT03_gp021;product=Serpin;protein_id=YP_010377023.1 +NC_063383.1 RefSeq sequence_feature 25529 25767 . - . ID=id-NC_063383.1:25529..25767;exon_number=OPG041;gbkey=misc_feature;number=OPG041 +NC_063383.1 RefSeq gene 25823 27097 . - . ID=gene-NBT03_gp022;Dbxref=GeneID:72551438;Name=OPG042;gbkey=Gene;gene=OPG042;gene_biotype=protein_coding;locus_tag=NBT03_gp022;old_locus_tag=MPXV-M5312_HM12_Rivers-026 +NC_063383.1 RefSeq CDS 25823 27097 . - 0 ID=cds-YP_010377025.1;Parent=gene-NBT03_gp022;Dbxref=GenBank:YP_010377025.1,GeneID:72551438;Name=OPG042;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp030%3B phospholipase D-like%3B Phospholipase-D-like protein%3B similar to VACV-WR C4L and VACV-Cop K4L;gbkey=CDS;gene=OPG042;locus_tag=NBT03_gp022;product=Phospholipase-D-like protein;protein_id=YP_010377025.1 +NC_063383.1 RefSeq gene 27125 27955 . - . ID=gene-NBT03_gp023;Dbxref=GeneID:72551439;Name=OPG043;gbkey=Gene;gene=OPG043;gene_biotype=protein_coding;locus_tag=NBT03_gp023;old_locus_tag=MPXV-M5312_HM12_Rivers-027 +NC_063383.1 RefSeq CDS 27125 27955 . - 0 ID=cds-YP_010377026.1;Parent=gene-NBT03_gp023;Dbxref=GenBank:YP_010377026.1,GeneID:72551439;Name=OPG043;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp031%3B lysophospholipase-like%3B Monoglyceride lipase%3B similar to VACV-WR C5L and VACV-Cop K5L;gbkey=CDS;gene=OPG043;locus_tag=NBT03_gp023;product=Putative monoglyceride lipase;protein_id=YP_010377026.1 +NC_063383.1 RefSeq gene 28091 28540 . + . ID=gene-NBT03_gp024;Dbxref=GeneID:72551440;Name=OPG044;gbkey=Gene;gene=OPG044;gene_biotype=protein_coding;locus_tag=NBT03_gp024;old_locus_tag=MPXV-M5312_HM12_Rivers-028 +NC_063383.1 RefSeq CDS 28091 28540 . + 0 ID=cds-YP_010377027.1;Parent=gene-NBT03_gp024;Dbxref=GenBank:YP_010377027.1,GeneID:72551440;Name=OPG044;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp032%3B Putative tlr signaling inhibitor%3B Host immune response repressor%3B similar to VACV-WR C6R and VACV-Cop #K7R;gbkey=CDS;gene=OPG044;locus_tag=NBT03_gp024;product=Bcl-2-like protein;protein_id=YP_010377027.1 +NC_063383.1 RefSeq gene 28603 29262 . - . ID=gene-NBT03_gp025;Dbxref=GeneID:72551441;Name=OPG045;gbkey=Gene;gene=OPG045;gene_biotype=protein_coding;locus_tag=NBT03_gp025;old_locus_tag=MPXV-M5312_HM12_Rivers-029 +NC_063383.1 RefSeq CDS 28603 29262 . - 0 ID=cds-YP_010377028.1;Parent=gene-NBT03_gp025;Dbxref=GenBank:YP_010377028.1,GeneID:72551441;Name=OPG045;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp033%3B Caspase-9 (apoptosis) inhibitor (mitochondrial- associated)%3B similar to VACV-WR C7L and VACV-Cop F1L;gbkey=CDS;gene=OPG045;locus_tag=NBT03_gp025;product=Caspase-9 inhibitor;protein_id=YP_010377028.1 +NC_063383.1 RefSeq gene 29274 29729 . - . ID=gene-NBT03_gp026;Dbxref=GeneID:72551442;Name=OPG046;gbkey=Gene;gene=OPG046;gene_biotype=protein_coding;locus_tag=NBT03_gp026;old_locus_tag=MPXV-M5312_HM12_Rivers-030 +NC_063383.1 RefSeq CDS 29274 29729 . - 0 ID=cds-YP_010377029.1;Parent=gene-NBT03_gp026;Dbxref=GenBank:YP_010377029.1,GeneID:72551442;Name=OPG046;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp034%3B deoxyuridine triphosphatase%3B dUTPase%3B similar to VACV-WR C8L and VACV-Cop F2L;gbkey=CDS;gene=OPG046;locus_tag=NBT03_gp026;product=dUTPase;protein_id=YP_010377029.1 +NC_063383.1 RefSeq gene 29746 31194 . - . ID=gene-NBT03_gp027;Dbxref=GeneID:72551443;Name=OPG047;gbkey=Gene;gene=OPG047;gene_biotype=protein_coding;locus_tag=NBT03_gp027;old_locus_tag=MPXV-M5312_HM12_Rivers-031 +NC_063383.1 RefSeq CDS 29746 31194 . - 0 ID=cds-YP_010377030.1;Parent=gene-NBT03_gp027;Dbxref=GenBank:YP_010377030.1,GeneID:72551443;Name=OPG047;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp035%3B kelch-like%3B Kelch-like protein%3B similar to VACV-WR C9L and VACV-Cop F3L;gbkey=CDS;gene=OPG047;locus_tag=NBT03_gp027;product=Kelch-like protein (2);protein_id=YP_010377030.1 +NC_063383.1 RefSeq gene 31205 32164 . - . ID=gene-NBT03_gp028;Dbxref=GeneID:72551444;Name=OPG048;gbkey=Gene;gene=OPG048;gene_biotype=protein_coding;locus_tag=NBT03_gp028;old_locus_tag=MPXV-M5312_HM12_Rivers-032 +NC_063383.1 RefSeq CDS 31205 32164 . - 0 ID=cds-YP_010377031.1;Parent=gene-NBT03_gp028;Dbxref=GenBank:YP_010377031.1,GeneID:72551444;Name=OPG048;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp036%3B Ribonucleotide reductase small subunit%2C R2%3B similar to VACV-WR C10L and VACV-Cop F4L;gbkey=CDS;gene=OPG048;locus_tag=NBT03_gp028;product=Ribonucleotide reductase small subunit;protein_id=YP_010377031.1 +NC_063383.1 RefSeq gene 32195 33151 . - . ID=gene-NBT03_gp029;Dbxref=GeneID:72551445;Name=OPG049;gbkey=Gene;gene=OPG049;gene_biotype=protein_coding;locus_tag=NBT03_gp029;old_locus_tag=MPXV-M5312_HM12_Rivers-033 +NC_063383.1 RefSeq CDS 32195 33151 . - 0 ID=cds-YP_010377032.1;Parent=gene-NBT03_gp029;Dbxref=GenBank:YP_010377032.1,GeneID:72551445;Name=OPG049;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp037%3B 36kDa major membrane protein%3B similar to VACV-WR C11L and VACV-Cop F5L;gbkey=CDS;gene=OPG049;locus_tag=NBT03_gp029;product=Telomere-binding protein I6 (1);protein_id=YP_010377032.1 +NC_063383.1 RefSeq gene 33181 33408 . - . ID=gene-NBT03_gp030;Dbxref=GeneID:72551446;Name=OPG050;gbkey=Gene;gene=OPG050;gene_biotype=protein_coding;locus_tag=NBT03_gp030;old_locus_tag=MPXV-M5312_HM12_Rivers-034 +NC_063383.1 RefSeq CDS 33181 33408 . - 0 ID=cds-YP_010377033.1;Parent=gene-NBT03_gp030;Dbxref=GenBank:YP_010377033.1,GeneID:72551446;Name=OPG050;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp038%3B Hypothetical protein%3B similar to VACV-WR C12L and VACV-Cop F6L;gbkey=CDS;gene=OPG050;locus_tag=NBT03_gp030;product=CPXV053 protein;protein_id=YP_010377033.1 +NC_063383.1 RefSeq gene 33425 33649 . - . ID=gene-NBT03_gp031;Dbxref=GeneID:72551447;Name=OPG051;gbkey=Gene;gene=OPG051;gene_biotype=protein_coding;locus_tag=NBT03_gp031;old_locus_tag=MPXV-M5312_HM12_Rivers-035 +NC_063383.1 RefSeq CDS 33425 33649 . - 0 ID=cds-YP_010377034.1;Parent=gene-NBT03_gp031;Dbxref=GenBank:YP_010377034.1,GeneID:72551447;Name=OPG051;Note=Taxonomic breadth: orthopoxvirus%3B Old product: MPXVgp039%3B Hypothetical protein%3B similar to VACV-WR C13L and VACV-Cop F7L;gbkey=CDS;gene=OPG051;locus_tag=NBT03_gp031;product=CPXV054 protein;protein_id=YP_010377034.1 +NC_063383.1 RefSeq gene 33801 33995 . - . ID=gene-NBT03_gp032;Dbxref=GeneID:72551448;Name=OPG052;gbkey=Gene;gene=OPG052;gene_biotype=protein_coding;locus_tag=NBT03_gp032;old_locus_tag=MPXV-M5312_HM12_Rivers-036 +NC_063383.1 RefSeq CDS 33801 33995 . - 0 ID=cds-YP_010377035.1;Parent=gene-NBT03_gp032;Dbxref=GenBank:YP_010377035.1,GeneID:72551448;Name=OPG052;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp040%3B Cytoplasmic protein%3B similar to VACV-WR C14L and VACV-Cop F8L;gbkey=CDS;gene=OPG052;locus_tag=NBT03_gp032;product=Cytoplasmic protein;protein_id=YP_010377035.1 +NC_063383.1 RefSeq gene 34052 34690 . - . ID=gene-NBT03_gp033;Dbxref=GeneID:72551449;Name=OPG053;gbkey=Gene;gene=OPG053;gene_biotype=protein_coding;locus_tag=NBT03_gp033;old_locus_tag=MPXV-M5312_HM12_Rivers-037 +NC_063383.1 RefSeq CDS 34052 34690 . - 0 ID=cds-YP_010377036.1;Parent=gene-NBT03_gp033;Dbxref=GenBank:YP_010377036.1,GeneID:72551449;Name=OPG053;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp041%3B S-S bond formation pathway protein substrate%3B similar to VACV-WR C15L and VACV-Cop F9L;gbkey=CDS;gene=OPG053;locus_tag=NBT03_gp033;product=IMV membrane protein L1R;protein_id=YP_010377036.1 +NC_063383.1 RefSeq gene 34677 35996 . - . ID=gene-NBT03_gp034;Dbxref=GeneID:72551450;Name=OPG054;gbkey=Gene;gene=OPG054;gene_biotype=protein_coding;locus_tag=NBT03_gp034;old_locus_tag=MPXV-M5312_HM12_Rivers-038 +NC_063383.1 RefSeq CDS 34677 35996 . - 0 ID=cds-YP_010377037.1;Parent=gene-NBT03_gp034;Dbxref=GenBank:YP_010377037.1,GeneID:72551450;Name=OPG054;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp042%3B serine%3B Essential Ser/Thr kinase morph%3B similar to VACV-WR C16L and VACV-Cop F10L;gbkey=CDS;gene=OPG054;locus_tag=NBT03_gp034;product=Serine/threonine-protein kinase;protein_id=YP_010377037.1 +NC_063383.1 RefSeq gene 36019 37083 . - . ID=gene-NBT03_gp035;Dbxref=GeneID:72551451;Name=OPG055;gbkey=Gene;gene=OPG055;gene_biotype=protein_coding;locus_tag=NBT03_gp035;old_locus_tag=MPXV-M5312_HM12_Rivers-039 +NC_063383.1 RefSeq CDS 36019 37083 . - 0 ID=cds-YP_010377038.1;Parent=gene-NBT03_gp035;Dbxref=GenBank:YP_010377038.1,GeneID:72551451;Name=OPG055;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp043%3B RhoA signalling inhibitor%2C virus release protein%3B MC018%3B similar to VACV-WR C17L and VACV-Cop F11L;gbkey=CDS;gene=OPG055;locus_tag=NBT03_gp035;product=Protein F11;protein_id=YP_010377038.1 +NC_063383.1 RefSeq gene 37127 39034 . - . ID=gene-NBT03_gp036;Dbxref=GeneID:72551452;Name=OPG056;gbkey=Gene;gene=OPG056;gene_biotype=protein_coding;locus_tag=NBT03_gp036;old_locus_tag=MPXV-M5312_HM12_Rivers-040 +NC_063383.1 RefSeq CDS 37127 39034 . - 0 ID=cds-YP_010377039.1;Parent=gene-NBT03_gp036;Dbxref=GenBank:YP_010377039.1,GeneID:72551452;Name=OPG056;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp044%3B actin tail formation%3B EEV maturation protein%3B similar to VACV-WR C18L and VACV-Cop F12L;gbkey=CDS;gene=OPG056;locus_tag=NBT03_gp036;product=EEV maturation protein;protein_id=YP_010377039.1 +NC_063383.1 RefSeq gene 39077 40195 . - . ID=gene-NBT03_gp037;Dbxref=GeneID:72551453;Name=OPG057;gbkey=Gene;gene=OPG057;gene_biotype=protein_coding;locus_tag=NBT03_gp037;old_locus_tag=MPXV-M5312_HM12_Rivers-041 +NC_063383.1 RefSeq CDS 39077 40195 . - 0 ID=cds-YP_010377040.1;Parent=gene-NBT03_gp037;Dbxref=GenBank:YP_010377040.1,GeneID:72551453;Name=OPG057;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp045%3B major envelope antigen of EEV%3B wrapping of IMV to form IEV%3B phospholipase D-like%3B Palmitylated EEV membrane glycoprotein%3B similar to VACV-WR C19L and VACV-Cop F13L;gbkey=CDS;gene=OPG057;locus_tag=NBT03_gp037;product=Palmytilated EEV membrane protein;protein_id=YP_010377040.1 +NC_063383.1 RefSeq gene 40213 40434 . - . ID=gene-NBT03_gp038;Dbxref=GeneID:72551454;Name=OPG058;gbkey=Gene;gene=OPG058;gene_biotype=protein_coding;locus_tag=NBT03_gp038;old_locus_tag=MPXV-M5312_HM12_Rivers-042 +NC_063383.1 RefSeq CDS 40213 40434 . - 0 ID=cds-YP_010377041.1;Parent=gene-NBT03_gp038;Dbxref=GenBank:YP_010377041.1,GeneID:72551454;Name=OPG058;Note=Taxonomic breadth: orthopoxvirus%3B Old product: MPXVgp046%3B similar to VACV-WR C20L and VACV-Cop F14L;gbkey=CDS;gene=OPG058;locus_tag=NBT03_gp038;product=Protein F14 (1);protein_id=YP_010377041.1 +NC_063383.1 RefSeq gene 40484 40633 . - . ID=gene-NBT03_gp039;Dbxref=GeneID:72551455;Name=OPG059;gbkey=Gene;gene=OPG059;gene_biotype=protein_coding;locus_tag=NBT03_gp039;old_locus_tag=MPXV-M5312_HM12_Rivers-043 +NC_063383.1 RefSeq CDS 40484 40633 . - 0 ID=cds-YP_010377042.1;Parent=gene-NBT03_gp039;Dbxref=GenBank:YP_010377042.1,GeneID:72551455;Name=OPG059;Note=Taxonomic breadth: poxvirinae%3B IMV protein%3B C20.5L%3B similar to VACV-CopF14.5L;gbkey=CDS;gene=OPG059;locus_tag=NBT03_gp039;product=Cytochrome C oxidase;protein_id=YP_010377042.1 +NC_063383.1 RefSeq gene 40706 41182 . - . ID=gene-NBT03_gp040;Dbxref=GeneID:72551456;Name=OPG060;gbkey=Gene;gene=OPG060;gene_biotype=protein_coding;locus_tag=NBT03_gp040;old_locus_tag=MPXV-M5312_HM12_Rivers-044 +NC_063383.1 RefSeq CDS 40706 41182 . - 0 ID=cds-YP_010377043.1;Parent=gene-NBT03_gp040;Dbxref=GenBank:YP_010377043.1,GeneID:72551456;Name=OPG060;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp047%3B Unknown conserved protein%3B similar to VACV-WR C21L and VACV-Cop F15L;gbkey=CDS;gene=OPG060;locus_tag=NBT03_gp040;product=Protein F15;protein_id=YP_010377043.1 +NC_063383.1 RefSeq gene 41189 41884 . - . ID=gene-NBT03_gp041;Dbxref=GeneID:72551457;Name=OPG061;gbkey=Gene;gene=OPG061;gene_biotype=protein_coding;locus_tag=NBT03_gp041;old_locus_tag=MPXV-M5312_HM12_Rivers-045 +NC_063383.1 RefSeq CDS 41189 41884 . - 0 ID=cds-YP_010377044.1;Parent=gene-NBT03_gp041;Dbxref=GenBank:YP_010377044.1,GeneID:72551457;Name=OPG061;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp048%3B Non-functional Serine Recombinase%3B similar to VACV-WR C22L and VACV-Cop F16L;gbkey=CDS;gene=OPG061;locus_tag=NBT03_gp041;product=Protein F16 (1);protein_id=YP_010377044.1 +NC_063383.1 RefSeq gene 41947 42252 . + . ID=gene-NBT03_gp042;Dbxref=GeneID:72551458;Name=OPG062;gbkey=Gene;gene=OPG062;gene_biotype=protein_coding;locus_tag=NBT03_gp042;old_locus_tag=MPXV-M5312_HM12_Rivers-046 +NC_063383.1 RefSeq CDS 41947 42252 . + 0 ID=cds-YP_010377045.1;Parent=gene-NBT03_gp042;Dbxref=GenBank:YP_010377045.1,GeneID:72551458;Name=OPG062;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp049%3B virion core DNA-binding phosphoprotein (VP11)%3B mTOR antagonist%3B similar to VACV-WR C23R and VACV-Cop F17R;gbkey=CDS;gene=OPG062;locus_tag=NBT03_gp042;product=DNA-binding phosphoprotein (1);protein_id=YP_010377045.1 +NC_063383.1 RefSeq gene 42249 43688 . - . ID=gene-NBT03_gp043;Dbxref=GeneID:72551459;Name=OPG063;gbkey=Gene;gene=OPG063;gene_biotype=protein_coding;locus_tag=NBT03_gp043;old_locus_tag=MPXV-M5312_HM12_Rivers-047 +NC_063383.1 RefSeq CDS 42249 43688 . - 0 ID=cds-YP_010377046.1;Parent=gene-NBT03_gp043;Dbxref=GenBank:YP_010377046.1,GeneID:72551459;Name=OPG063;Note=Taxonomic breadth: poxvirinae%3B Old product: MPXVgp050%3B poly-A polymerase%2C Poly (A) polymerase catalytic subunit (VP55)%3B similar to VACV-WR F1L and VACV-Cop E1L;gbkey=CDS;gene=OPG063;locus_tag=NBT03_gp043;product=Poly(A) polymerase catalytic subunit (3);protein_id=YP_010377046.1 +NC_063383.1 RefSeq gene 43685 45898 . - . ID=gene-NBT03_gp044;Dbxref=GeneID:72551460;Name=OPG064;gbkey=Gene;gene=OPG064;gene_biotype=protein_coding;locus_tag=NBT03_gp044;old_locus_tag=MPXV-M5312_HM12_Rivers-048 +NC_063383.1 RefSeq CDS 43685 45898 . - 0 ID=cds-YP_010377047.1;Parent=gene-NBT03_gp044;Dbxref=GenBank:YP_010377047.1,GeneID:72551460;Name=OPG064;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp051%3B IEV morphogenesis%3B similar to VACV-WR F2L and VACV-Cop E2L;gbkey=CDS;gene=OPG064;locus_tag=NBT03_gp044;product=Iev morphogenesis protein;protein_id=YP_010377047.1 +NC_063383.1 RefSeq gene 46022 46483 . - . ID=gene-NBT03_gp045;Dbxref=GeneID:72551461;Name=OPG065;gbkey=Gene;gene=OPG065;gene_biotype=protein_coding;locus_tag=NBT03_gp045;old_locus_tag=MPXV-M5312_HM12_Rivers-049 +NC_063383.1 RefSeq CDS 46022 46483 . - 0 ID=cds-YP_010377048.1;Parent=gene-NBT03_gp045;Dbxref=GenBank:YP_010377048.1,GeneID:72551461;Name=OPG065;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp052%3B interferon resistance factor%3B two forms (25 kDa and 19 kDa) of the dsRNA-binding protein%3B inhibition of dsRNA-dependent protein kinase and 2-5A-synthet%3B dsRNA-binding protein%2C IFN resistance/PKR inhibitor (Z-DNA binding)%3B start of ORF is missing approx. 37 AA compared to CPXVs%3B similar to VACV-WR F3L and VACV-Cop E3L;gbkey=CDS;gene=OPG065;locus_tag=NBT03_gp045;product=Double-stranded RNA binding protein;protein_id=YP_010377048.1 +NC_063383.1 RefSeq gene 46649 47428 . - . ID=gene-NBT03_gp046;Dbxref=GeneID:72551462;Name=OPG066;gbkey=Gene;gene=OPG066;gene_biotype=protein_coding;locus_tag=NBT03_gp046;old_locus_tag=MPXV-M5312_HM12_Rivers-050 +NC_063383.1 RefSeq CDS 46649 47428 . - 0 ID=cds-YP_010377049.1;Parent=gene-NBT03_gp046;Dbxref=GenBank:YP_010377049.1,GeneID:72551462;Name=OPG066;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp053%3B RNA polymerase 30 kDa subunit (RPO30)%3B simultaneously intermediate stage promoter-specific transcription factor%2C VITF-1%3B similar to VACV-WR F4L and VACV-Cop E4L;gbkey=CDS;gene=OPG066;locus_tag=NBT03_gp046;product=DNA-directed RNA polymerase 30 kDa polypeptide;protein_id=YP_010377049.1 +NC_063383.1 RefSeq sequence_feature 47525 48062 . + . ID=id-NC_063383.1:47525..48062;exon_number=OPG067;gbkey=misc_feature;number=OPG067 +NC_063383.1 RefSeq gene 48201 49904 . + . ID=gene-NBT03_gp047;Dbxref=GeneID:72551463;Name=OPG068;gbkey=Gene;gene=OPG068;gene_biotype=protein_coding;locus_tag=NBT03_gp047;old_locus_tag=MPXV-M5312_HM12_Rivers-052 +NC_063383.1 RefSeq CDS 48201 49904 . + 0 ID=cds-YP_010377051.1;Parent=gene-NBT03_gp047;Dbxref=GenBank:YP_010377051.1,GeneID:72551463;Name=OPG068;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp054%3B Virion protein%3B similar to VACV-WR F5R and VACV-Cop E6R;gbkey=CDS;gene=OPG068;locus_tag=NBT03_gp047;product=IMV membrane protein E6;protein_id=YP_010377051.1 +NC_063383.1 RefSeq gene 49986 50486 . + . ID=gene-NBT03_gp048;Dbxref=GeneID:72551464;Name=OPG069;gbkey=Gene;gene=OPG069;gene_biotype=protein_coding;locus_tag=NBT03_gp048;old_locus_tag=MPXV-M5312_HM12_Rivers-053 +NC_063383.1 RefSeq CDS 49986 50486 . + 0 ID=cds-YP_010377052.1;Parent=gene-NBT03_gp048;Dbxref=GenBank:YP_010377052.1,GeneID:72551464;Name=OPG069;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp055%3B soluble myristylated protein%3B similar to VACV-WR F6R and VACV-Cop E7R;gbkey=CDS;gene=OPG069;locus_tag=NBT03_gp048;product=Myristoylated protein E7;protein_id=YP_010377052.1 +NC_063383.1 RefSeq gene 50590 51411 . + . ID=gene-NBT03_gp049;Dbxref=GeneID:72551465;Name=OPG070;gbkey=Gene;gene=OPG070;gene_biotype=protein_coding;locus_tag=NBT03_gp049;old_locus_tag=MPXV-M5312_HM12_Rivers-054 +NC_063383.1 RefSeq CDS 50590 51411 . + 0 ID=cds-YP_010377053.1;Parent=gene-NBT03_gp049;Dbxref=GenBank:YP_010377053.1,GeneID:72551465;Name=OPG070;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp056%3B ER-localized membrane protein%2C virion core protein%3B similar to VACV-WR F7R and VACV-Cop E8R;gbkey=CDS;gene=OPG070;locus_tag=NBT03_gp049;product=Membrane protein E8;protein_id=YP_010377053.1 +NC_063383.1 RefSeq gene 51418 54438 . - . ID=gene-NBT03_gp050;Dbxref=GeneID:72551466;Name=OPG071;gbkey=Gene;gene=OPG071;gene_biotype=protein_coding;locus_tag=NBT03_gp050;old_locus_tag=MPXV-M5312_HM12_Rivers-055 +NC_063383.1 RefSeq CDS 51418 54438 . - 0 ID=cds-YP_010377054.1;Parent=gene-NBT03_gp050;Dbxref=GenBank:YP_010377054.1,GeneID:72551466;Name=OPG071;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp057%3B DNA polymerase%2C catalytic subunit%3B similar to VACV-WR F8L and VACV-Cop E9L;gbkey=CDS;gene=OPG071;locus_tag=NBT03_gp050;product=DNA polymerase (2);protein_id=YP_010377054.1 +NC_063383.1 RefSeq gene 54470 54757 . + . ID=gene-NBT03_gp051;Dbxref=GeneID:72551467;Name=OPG072;gbkey=Gene;gene=OPG072;gene_biotype=protein_coding;locus_tag=NBT03_gp051;old_locus_tag=MPXV-M5312_HM12_Rivers-056 +NC_063383.1 RefSeq CDS 54470 54757 . + 0 ID=cds-YP_010377055.1;Parent=gene-NBT03_gp051;Dbxref=GenBank:YP_010377055.1,GeneID:72551467;Name=OPG072;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp058%3B protein disulfide bond-forming enzyme%3B Sulfhydryl oxidase (FAD-linked)%3B similar to VACV-WR F9R and VACV-Cop E10R;gbkey=CDS;gene=OPG072;locus_tag=NBT03_gp051;product=Sulfhydryl oxidase;protein_id=YP_010377055.1 +NC_063383.1 RefSeq gene 54752 55141 . - . ID=gene-NBT03_gp052;Dbxref=GeneID:72551468;Name=OPG073;gbkey=Gene;gene=OPG073;gene_biotype=protein_coding;locus_tag=NBT03_gp052;old_locus_tag=MPXV-M5312_HM12_Rivers-057 +NC_063383.1 RefSeq CDS 54752 55141 . - 0 ID=cds-YP_010377056.1;Parent=gene-NBT03_gp052;Dbxref=GenBank:YP_010377056.1,GeneID:72551468;Name=OPG073;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp059%3B virion core protein%3B similar to VACV-WR F10L and VACV-Cop E11L;gbkey=CDS;gene=OPG073;locus_tag=NBT03_gp052;product=Virion core protein E11;protein_id=YP_010377056.1 +NC_063383.1 RefSeq gene 55128 57125 . - . ID=gene-NBT03_gp053;Dbxref=GeneID:72551469;Name=OPG074;gbkey=Gene;gene=OPG074;gene_biotype=protein_coding;locus_tag=NBT03_gp053;old_locus_tag=MPXV-M5312_HM12_Rivers-058 +NC_063383.1 RefSeq CDS 55128 57125 . - 0 ID=cds-YP_010377057.1;Parent=gene-NBT03_gp053;Dbxref=GenBank:YP_010377057.1,GeneID:72551469;Name=OPG074;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp060%3B Membrane protein%3B similar to VACV-WR Q1L and VACV-Cop O1L;gbkey=CDS;gene=OPG074;locus_tag=NBT03_gp053;product=Iev morphogenesis protein;protein_id=YP_010377057.1 +NC_063383.1 RefSeq gene 57172 57498 . - . ID=gene-NBT03_gp054;Dbxref=GeneID:72551470;Name=OPG075;gbkey=Gene;gene=OPG075;gene_biotype=protein_coding;locus_tag=NBT03_gp054;old_locus_tag=MPXV-M5312_HM12_Rivers-059 +NC_063383.1 RefSeq CDS 57172 57498 . - 0 ID=cds-YP_010377058.1;Parent=gene-NBT03_gp054;Dbxref=GenBank:YP_010377058.1,GeneID:72551470;Name=OPG075;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp061%3B virion-associated glutaredoxin%3B glutaredoxin 1%3B similar to VACV-WR Q2L and VACV-Cop O2L;gbkey=CDS;gene=OPG075;locus_tag=NBT03_gp054;product=Glutaredoxin-1;protein_id=YP_010377058.1 +NC_063383.1 RefSeq gene 57523 57630 . - . ID=gene-NBT03_gp055;Dbxref=GeneID:72551471;Name=OPG076;gbkey=Gene;gene=OPG076;gene_biotype=protein_coding;locus_tag=NBT03_gp055 +NC_063383.1 RefSeq CDS 57523 57630 . - 0 ID=cds-YP_010377183.1;Parent=gene-NBT03_gp055;Dbxref=GenBank:YP_010377183.1,GeneID:72551471;Name=OPG076;gbkey=CDS;gene=OPG076;locus_tag=NBT03_gp055;product=MV membrane EFC component;protein_id=YP_010377183.1 +NC_063383.1 RefSeq gene 57645 58583 . - . ID=gene-NBT03_gp056;Dbxref=GeneID:72551472;Name=OPG077;gbkey=Gene;gene=OPG077;gene_biotype=protein_coding;locus_tag=NBT03_gp056;old_locus_tag=MPXV-M5312_HM12_Rivers-060 +NC_063383.1 RefSeq CDS 57645 58583 . - 0 ID=cds-YP_010377059.1;Parent=gene-NBT03_gp056;Dbxref=GenBank:YP_010377059.1,GeneID:72551472;Name=OPG077;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp062%3B virosomal protein essential for virus multiplication%3B DNA-binding core protein%3B similar to VACV-WR I1L and VACV-Cop I1L;gbkey=CDS;gene=OPG077;locus_tag=NBT03_gp056;product=Telomere-binding protein I1;protein_id=YP_010377059.1 +NC_063383.1 RefSeq gene 58590 58811 . - . ID=gene-NBT03_gp057;Dbxref=GeneID:72551473;Name=OPG078;gbkey=Gene;gene=OPG078;gene_biotype=protein_coding;locus_tag=NBT03_gp057;old_locus_tag=MPXV-M5312_HM12_Rivers-061 +NC_063383.1 RefSeq CDS 58590 58811 . - 0 ID=cds-YP_010377060.1;Parent=gene-NBT03_gp057;Dbxref=GenBank:YP_010377060.1,GeneID:72551473;Name=OPG078;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp063%3B IMV membrane protein%3B similar to VACV-WR I2L and VACV-Cop I2L;gbkey=CDS;gene=OPG078;locus_tag=NBT03_gp057;product=IMV membrane protein I2;protein_id=YP_010377060.1 +NC_063383.1 RefSeq gene 58812 59621 . - . ID=gene-NBT03_gp058;Dbxref=GeneID:72551474;Name=OPG079;gbkey=Gene;gene=OPG079;gene_biotype=protein_coding;locus_tag=NBT03_gp058;old_locus_tag=MPXV-M5312_HM12_Rivers-062 +NC_063383.1 RefSeq CDS 58812 59621 . - 0 ID=cds-YP_010377061.1;Parent=gene-NBT03_gp058;Dbxref=GenBank:YP_010377061.1,GeneID:72551474;Name=OPG079;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp064%3B virosomal ssDNA-binding phosphoprotein%3B interacts with R2 subunit of ribonucleotide reductase%3B similar to VACV-WR I3L and VACV-Cop I3L;gbkey=CDS;gene=OPG079;locus_tag=NBT03_gp058;product=DNA-binding phosphoprotein (2);protein_id=YP_010377061.1 +NC_063383.1 RefSeq gene 59703 62018 . - . ID=gene-NBT03_gp059;Dbxref=GeneID:72551475;Name=OPG080;gbkey=Gene;gene=OPG080;gene_biotype=protein_coding;locus_tag=NBT03_gp059;old_locus_tag=MPXV-M5312_HM12_Rivers-063 +NC_063383.1 RefSeq CDS 59703 62018 . - 0 ID=cds-YP_010377062.1;Parent=gene-NBT03_gp059;Dbxref=GenBank:YP_010377062.1,GeneID:72551475;Name=OPG080;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp065%3B ribonucleotide reductase%2C large subunit%2C R1%3B similar to VACV-WR I4L and VACV-Cop I4L;gbkey=CDS;gene=OPG080;locus_tag=NBT03_gp059;product=Ribonucleoside-diphosphate reductase (2);protein_id=YP_010377062.1 +NC_063383.1 RefSeq gene 62046 62285 . - . ID=gene-NBT03_gp060;Dbxref=GeneID:72551476;Name=OPG081;gbkey=Gene;gene=OPG081;gene_biotype=protein_coding;locus_tag=NBT03_gp060;old_locus_tag=MPXV-M5312_HM12_Rivers-064 +NC_063383.1 RefSeq CDS 62046 62285 . - 0 ID=cds-YP_010377063.1;Parent=gene-NBT03_gp060;Dbxref=GenBank:YP_010377063.1,GeneID:72551476;Name=OPG081;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp066%3B IMV surface membrane protein%2C VP13%3B similar to VACV-WR I5L and VACV-Cop I5L;gbkey=CDS;gene=OPG081;locus_tag=NBT03_gp060;product=IMV membrane protein I5;protein_id=YP_010377063.1 +NC_063383.1 RefSeq gene 62304 63452 . - . ID=gene-NBT03_gp061;Dbxref=GeneID:72551477;Name=OPG082;gbkey=Gene;gene=OPG082;gene_biotype=protein_coding;locus_tag=NBT03_gp061;old_locus_tag=MPXV-M5312_HM12_Rivers-065 +NC_063383.1 RefSeq CDS 62304 63452 . - 0 ID=cds-YP_010377064.1;Parent=gene-NBT03_gp061;Dbxref=GenBank:YP_010377064.1,GeneID:72551477;Name=OPG082;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp067%3B Telomere-binding protein%3B similar to VACV-WR I6L and VACV-Cop I6L;gbkey=CDS;gene=OPG082;locus_tag=NBT03_gp061;product=Telomere-binding protein;protein_id=YP_010377064.1 +NC_063383.1 RefSeq gene 63445 64716 . - . ID=gene-NBT03_gp062;Dbxref=GeneID:72551478;Name=OPG083;gbkey=Gene;gene=OPG083;gene_biotype=protein_coding;locus_tag=NBT03_gp062;old_locus_tag=MPXV-M5312_HM12_Rivers-066 +NC_063383.1 RefSeq CDS 63445 64716 . - 0 ID=cds-YP_010377065.1;Parent=gene-NBT03_gp062;Dbxref=GenBank:YP_010377065.1,GeneID:72551478;Name=OPG083;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp068%3B virion core protein%3B similar to DNA topoisomerase II%3B Virion core cysteine protease%3B similar to VACV-WR I7L and VACV-Cop I7L;gbkey=CDS;gene=OPG083;locus_tag=NBT03_gp062;product=Viral core cysteine proteinase;protein_id=YP_010377065.1 +NC_063383.1 RefSeq gene 64722 66752 . + . ID=gene-NBT03_gp063;Dbxref=GeneID:72551479;Name=OPG084;gbkey=Gene;gene=OPG084;gene_biotype=protein_coding;locus_tag=NBT03_gp063;old_locus_tag=MPXV-M5312_HM12_Rivers-067 +NC_063383.1 RefSeq CDS 64722 66752 . + 0 ID=cds-YP_010377066.1;Parent=gene-NBT03_gp063;Dbxref=GenBank:YP_010377066.1,GeneID:72551479;Name=OPG084;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp069%3B nucleoside triphosphate phosphohydrolase II%2C NPH-II%3B DNA and RNA helicase%3B DExH-NPH-II domain%3B similar to VACV-WR I8R and VACV-Cop I8R;gbkey=CDS;gene=OPG084;locus_tag=NBT03_gp063;product=RNA helicase NPH-II (2);protein_id=YP_010377066.1 +NC_063383.1 RefSeq gene 66756 68531 . - . ID=gene-NBT03_gp064;Dbxref=GeneID:72551480;Name=OPG085;gbkey=Gene;gene=OPG085;gene_biotype=protein_coding;locus_tag=NBT03_gp064;old_locus_tag=MPXV-M5312_HM12_Rivers-068 +NC_063383.1 RefSeq CDS 66756 68531 . - 0 ID=cds-YP_010377067.1;Parent=gene-NBT03_gp064;Dbxref=GenBank:YP_010377067.1,GeneID:72551480;Name=OPG085;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp070%3B proteinase%3B Metalloprotease%3B similar to VACV-WR G1L and VACV-Cop G1L;gbkey=CDS;gene=OPG085;locus_tag=NBT03_gp064;product=Metalloendopeptidase;protein_id=YP_010377067.1 +NC_063383.1 RefSeq gene 68528 68863 . - . ID=gene-NBT03_gp065;Dbxref=GeneID:72551481;Name=OPG086;gbkey=Gene;gene=OPG086;gene_biotype=protein_coding;locus_tag=NBT03_gp065;old_locus_tag=MPXV-M5312_HM12_Rivers-069 +NC_063383.1 RefSeq CDS 68528 68863 . - 0 ID=cds-YP_010377068.1;Parent=gene-NBT03_gp065;Dbxref=GenBank:YP_010377068.1,GeneID:72551481;Name=OPG086;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp071%3B Entry/fusion complex component%3B similar to VACV-WR G2L and VACV-Cop G3L;gbkey=CDS;gene=OPG086;locus_tag=NBT03_gp065;product=Entry/fusion complex component;protein_id=YP_010377068.1 +NC_063383.1 RefSeq gene 68857 69519 . + . ID=gene-NBT03_gp066;Dbxref=GeneID:72551482;Name=OPG087;gbkey=Gene;gene=OPG087;gene_biotype=protein_coding;locus_tag=NBT03_gp066;old_locus_tag=MPXV-M5312_HM12_Rivers-070 +NC_063383.1 RefSeq CDS 68857 69519 . + 0 ID=cds-YP_010377069.1;Parent=gene-NBT03_gp066;Dbxref=GenBank:YP_010377069.1,GeneID:72551482;Name=OPG087;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp072%3B VLTF (late transcription elongation factor)%3B similar to VACV-WR G3R and VACV-Cop G2R;gbkey=CDS;gene=OPG087;locus_tag=NBT03_gp066;product=Late transcription elongation factor;protein_id=YP_010377069.1 +NC_063383.1 RefSeq gene 69489 69863 . - . ID=gene-NBT03_gp067;Dbxref=GeneID:72551483;Name=OPG088;gbkey=Gene;gene=OPG088;gene_biotype=protein_coding;locus_tag=NBT03_gp067;old_locus_tag=MPXV-M5312_HM12_Rivers-071 +NC_063383.1 RefSeq CDS 69489 69863 . - 0 ID=cds-YP_010377070.1;Parent=gene-NBT03_gp067;Dbxref=GenBank:YP_010377070.1,GeneID:72551483;Name=OPG088;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp073%3B virion-associated glutaredoxin%3B Glutaredoxin-like protein%3B similar to VACV-WR G4L and VACV-Cop G4L;gbkey=CDS;gene=OPG088;locus_tag=NBT03_gp067;product=Glutaredoxin-2;protein_id=YP_010377070.1 +NC_063383.1 RefSeq gene 69866 71170 . + . ID=gene-NBT03_gp068;Dbxref=GeneID:72551484;Name=OPG089;gbkey=Gene;gene=OPG089;gene_biotype=protein_coding;locus_tag=NBT03_gp068;old_locus_tag=MPXV-M5312_HM12_Rivers-072 +NC_063383.1 RefSeq CDS 69866 71170 . + 0 ID=cds-YP_010377071.1;Parent=gene-NBT03_gp068;Dbxref=GenBank:YP_010377071.1,GeneID:72551484;Name=OPG089;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp074%3B FEN1-like nuclease%3B similar to VACV-WR G5R and VACV-Cop G5R;gbkey=CDS;gene=OPG089;locus_tag=NBT03_gp068;product=FEN1-like nuclease;protein_id=YP_010377071.1 +NC_063383.1 RefSeq gene 71179 71370 . + . ID=gene-NBT03_gp069;Dbxref=GeneID:72551485;Name=OPG090;gbkey=Gene;gene=OPG090;gene_biotype=protein_coding;locus_tag=NBT03_gp069;old_locus_tag=MPXV-M5312_HM12_Rivers-073 +NC_063383.1 RefSeq CDS 71179 71370 . + 0 ID=cds-YP_010377072.1;Parent=gene-NBT03_gp069;Dbxref=GenBank:YP_010377072.1,GeneID:72551485;Name=OPG090;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp075%3B RNA polymerase subunit%2C 7 kDa subunit (RPO7)%3B similar to VACV-WR G6R and VACV-Cop G5.5R;gbkey=CDS;gene=OPG090;locus_tag=NBT03_gp069;product=DNA-directed RNA polymerase 7 kDa subunit;protein_id=YP_010377072.1 +NC_063383.1 RefSeq gene 71370 71867 . + . ID=gene-NBT03_gp070;Dbxref=GeneID:72551486;Name=OPG091;gbkey=Gene;gene=OPG091;gene_biotype=protein_coding;locus_tag=NBT03_gp070;old_locus_tag=MPXV-M5312_HM12_Rivers-074 +NC_063383.1 RefSeq CDS 71370 71867 . + 0 ID=cds-YP_010377073.1;Parent=gene-NBT03_gp070;Dbxref=GenBank:YP_010377073.1,GeneID:72551486;Name=OPG091;Note=Taxonomic breadth: poxvirinae%3B Old product: MPXVgp076%3B NLPc/P60 superfamily protein%3B similar to VACV-WR G7R and VACV-Cop G6R;gbkey=CDS;gene=OPG091;locus_tag=NBT03_gp070;product=Nlpc/p60 superfamily protein;protein_id=YP_010377073.1 +NC_063383.1 RefSeq gene 71832 72947 . - . ID=gene-NBT03_gp071;Dbxref=GeneID:72551487;Name=OPG092;gbkey=Gene;gene=OPG092;gene_biotype=protein_coding;locus_tag=NBT03_gp071;old_locus_tag=MPXV-M5312_HM12_Rivers-075 +NC_063383.1 RefSeq CDS 71832 72947 . - 0 ID=cds-YP_010377074.1;Parent=gene-NBT03_gp071;Dbxref=GenBank:YP_010377074.1,GeneID:72551487;Name=OPG092;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp077%3B virion protein%3B Virion phosphoprotein%2C early morphogenesis%3B similar to VACV-WR G8L and VACV-Cop G7L;gbkey=CDS;gene=OPG092;locus_tag=NBT03_gp071;product=Assembly protein G7;protein_id=YP_010377074.1 +NC_063383.1 RefSeq gene 72978 73760 . + . ID=gene-NBT03_gp072;Dbxref=GeneID:72551488;Name=OPG093;gbkey=Gene;gene=OPG093;gene_biotype=protein_coding;locus_tag=NBT03_gp072;old_locus_tag=MPXV-M5312_HM12_Rivers-076 +NC_063383.1 RefSeq CDS 72978 73760 . + 0 ID=cds-YP_010377075.1;Parent=gene-NBT03_gp072;Dbxref=GenBank:YP_010377075.1,GeneID:72551488;Name=OPG093;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp078%3B late gene transcription factor%2C VLTF-1%3B similar to VACV-WR G9R and VACV-Cop G8R;gbkey=CDS;gene=OPG093;locus_tag=NBT03_gp072;product=Late transcription factor VLTF-1;protein_id=YP_010377075.1 +NC_063383.1 RefSeq gene 73780 74802 . + . ID=gene-NBT03_gp073;Dbxref=GeneID:72551489;Name=OPG094;gbkey=Gene;gene=OPG094;gene_biotype=protein_coding;locus_tag=NBT03_gp073;old_locus_tag=MPXV-M5312_HM12_Rivers-077 +NC_063383.1 RefSeq CDS 73780 74802 . + 0 ID=cds-YP_010377076.1;Parent=gene-NBT03_gp073;Dbxref=GenBank:YP_010377076.1,GeneID:72551489;Name=OPG094;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp079%3B myristylated protein%3B Entry/fusion complex component%2C myristylprotein%3B similar to VACV-WR G10R and VACV-Cop G9R;gbkey=CDS;gene=OPG094;locus_tag=NBT03_gp073;product=Myristylated protein;protein_id=YP_010377076.1 +NC_063383.1 RefSeq gene 74803 75555 . + . ID=gene-NBT03_gp074;Dbxref=GeneID:72551490;Name=OPG095;gbkey=Gene;gene=OPG095;gene_biotype=protein_coding;locus_tag=NBT03_gp074;old_locus_tag=MPXV-M5312_HM12_Rivers-078 +NC_063383.1 RefSeq CDS 74803 75555 . + 0 ID=cds-YP_010377077.1;Parent=gene-NBT03_gp074;Dbxref=GenBank:YP_010377077.1,GeneID:72551490;Name=OPG095;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp080%3B myristylated IMV surface membrane protein%3B similar to VACV-WR M1R and VACV-Cop L1R;gbkey=CDS;gene=OPG095;locus_tag=NBT03_gp074;product=IMV membrane protein L1R;protein_id=YP_010377077.1 +NC_063383.1 RefSeq gene 75587 75865 . + . ID=gene-NBT03_gp075;Dbxref=GeneID:72551491;Name=OPG096;gbkey=Gene;gene=OPG096;gene_biotype=protein_coding;locus_tag=NBT03_gp075;old_locus_tag=MPXV-M5312_HM12_Rivers-079 +NC_063383.1 RefSeq CDS 75587 75865 . + 0 ID=cds-YP_010377078.1;Parent=gene-NBT03_gp075;Dbxref=GenBank:YP_010377078.1,GeneID:72551491;Name=OPG096;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp081%3B Viral membrane assembly proteins (VMAP)%3B similar to VACV-WR M2R and VACV-Cop L2R;gbkey=CDS;gene=OPG096;locus_tag=NBT03_gp075;product=Crescent membrane and immature virion formation protein;protein_id=YP_010377078.1 +NC_063383.1 RefSeq gene 75841 76875 . - . ID=gene-NBT03_gp076;Dbxref=GeneID:72551492;Name=OPG097;gbkey=Gene;gene=OPG097;gene_biotype=protein_coding;locus_tag=NBT03_gp076;old_locus_tag=MPXV-M5312_HM12_Rivers-080 +NC_063383.1 RefSeq CDS 75841 76875 . - 0 ID=cds-YP_010377079.1;Parent=gene-NBT03_gp076;Dbxref=GenBank:YP_010377079.1,GeneID:72551492;Name=OPG097;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp082%3B Internal virion protein%3B similar to VACV-WR M3L and VACV-Cop L3L;gbkey=CDS;gene=OPG097;locus_tag=NBT03_gp076;product=Internal virion L3/FP4 protein;protein_id=YP_010377079.1 +NC_063383.1 RefSeq gene 76900 77655 . + . ID=gene-NBT03_gp077;Dbxref=GeneID:72551493;Name=OPG098;gbkey=Gene;gene=OPG098;gene_biotype=protein_coding;locus_tag=NBT03_gp077;old_locus_tag=MPXV-M5312_HM12_Rivers-081 +NC_063383.1 RefSeq CDS 76900 77655 . + 0 ID=cds-YP_010377080.1;Parent=gene-NBT03_gp077;Dbxref=GenBank:YP_010377080.1,GeneID:72551493;Name=OPG098;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp083%3B virion core protein vp8%3B stimulation of I8R helicase activity%3B ss/dsDNA binding protein (VP8)%3B similar to VACV-WR M4R and VACV-Cop L4R;gbkey=CDS;gene=OPG098;locus_tag=NBT03_gp077;product=Nucleic acid binding protein VP8/L4R;protein_id=YP_010377080.1 +NC_063383.1 RefSeq gene 77665 78051 . + . ID=gene-NBT03_gp078;Dbxref=GeneID:72551494;Name=OPG099;gbkey=Gene;gene=OPG099;gene_biotype=protein_coding;locus_tag=NBT03_gp078;old_locus_tag=MPXV-M5312_HM12_Rivers-082 +NC_063383.1 RefSeq CDS 77665 78051 . + 0 ID=cds-YP_010377081.1;Parent=gene-NBT03_gp078;Dbxref=GenBank:YP_010377081.1,GeneID:72551494;Name=OPG099;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp084%3B Entry and Fusion IMV protein%3B similar to VACV-WR M5R and VACV-Cop L5R;gbkey=CDS;gene=OPG099;locus_tag=NBT03_gp078;product=Membrane protein CL5;protein_id=YP_010377081.1 +NC_063383.1 RefSeq gene 78008 78466 . + . ID=gene-NBT03_gp079;Dbxref=GeneID:72551495;Name=OPG100;gbkey=Gene;gene=OPG100;gene_biotype=protein_coding;locus_tag=NBT03_gp079;old_locus_tag=MPXV-M5312_HM12_Rivers-083 +NC_063383.1 RefSeq CDS 78008 78466 . + 0 ID=cds-YP_010377082.1;Parent=gene-NBT03_gp079;Dbxref=GenBank:YP_010377082.1,GeneID:72551495;Name=OPG100;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp085%3B Virion morph%3B similar to VACV-WR L1R and VACV-Cop J1R;gbkey=CDS;gene=OPG100;locus_tag=NBT03_gp079;product=IMV membrane protein J1;protein_id=YP_010377082.1 +NC_063383.1 RefSeq gene 78486 79019 . + . ID=gene-NBT03_gp080;Dbxref=GeneID:72551496;Name=OPG101;gbkey=Gene;gene=OPG101;gene_biotype=protein_coding;locus_tag=NBT03_gp080;old_locus_tag=MPXV-M5312_HM12_Rivers-084 +NC_063383.1 RefSeq CDS 78486 79019 . + 0 ID=cds-YP_010377083.1;Parent=gene-NBT03_gp080;Dbxref=GenBank:YP_010377083.1,GeneID:72551496;Name=OPG101;Note=Taxonomic breadth: poxvirinae%3B Old product: MPXVgp086%3B thymidine kinase%3B similar to VACV-WR L2R and VACV-Cop J2R;gbkey=CDS;gene=OPG101;locus_tag=NBT03_gp080;product=Thymidine kinase;protein_id=YP_010377083.1 +NC_063383.1 RefSeq gene 79085 80086 . + . ID=gene-NBT03_gp081;Dbxref=GeneID:72551497;Name=OPG102;gbkey=Gene;gene=OPG102;gene_biotype=protein_coding;locus_tag=NBT03_gp081;old_locus_tag=MPXV-M5312_HM12_Rivers-085 +NC_063383.1 RefSeq CDS 79085 80086 . + 0 ID=cds-YP_010377084.1;Parent=gene-NBT03_gp081;Dbxref=GenBank:YP_010377084.1,GeneID:72551497;Name=OPG102;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp087%3B poly-A polymerase%2C stimulatory subunit%2C simultaneously cap-specific mRNA (nucleoside-O2'-)-methyltransferase%3B Poly (A) polymerase small subunit (VP39)%3B similar to VACV-WR L3R and VACV-Cop J3R;gbkey=CDS;gene=OPG102;locus_tag=NBT03_gp081;product=Cap-specific mRNA;protein_id=YP_010377084.1 +NC_063383.1 RefSeq gene 80001 80558 . + . ID=gene-NBT03_gp082;Dbxref=GeneID:72551498;Name=OPG103;gbkey=Gene;gene=OPG103;gene_biotype=protein_coding;locus_tag=NBT03_gp082;old_locus_tag=MPXV-M5312_HM12_Rivers-086 +NC_063383.1 RefSeq CDS 80001 80558 . + 0 ID=cds-YP_010377085.1;Parent=gene-NBT03_gp082;Dbxref=GenBank:YP_010377085.1,GeneID:72551498;Name=OPG103;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp088%3B RNA polymerase%2C 22 kDa subunit (RPO22)%3B similar to VACV-WR L4R and VACV-Cop J4R;gbkey=CDS;gene=OPG103;locus_tag=NBT03_gp082;product=DNA-directed RNA polymerase subunit;protein_id=YP_010377085.1 +NC_063383.1 RefSeq gene 80618 81019 . - . ID=gene-NBT03_gp083;Dbxref=GeneID:72551499;Name=OPG104;gbkey=Gene;gene=OPG104;gene_biotype=protein_coding;locus_tag=NBT03_gp083;old_locus_tag=MPXV-M5312_HM12_Rivers-087 +NC_063383.1 RefSeq CDS 80618 81019 . - 0 ID=cds-YP_010377086.1;Parent=gene-NBT03_gp083;Dbxref=GenBank:YP_010377086.1,GeneID:72551499;Name=OPG104;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp089%3B essential for virus multiplication%3B IMV membrane protein%3B similar to VACV-WR L5L and VACV-Cop J5L;gbkey=CDS;gene=OPG104;locus_tag=NBT03_gp083;product=Myristylated protein;protein_id=YP_010377086.1 +NC_063383.1 RefSeq gene 81126 84986 . + . ID=gene-NBT03_gp084;Dbxref=GeneID:72551500;Name=OPG105;gbkey=Gene;gene=OPG105;gene_biotype=protein_coding;locus_tag=NBT03_gp084;old_locus_tag=MPXV-M5312_HM12_Rivers-088 +NC_063383.1 RefSeq CDS 81126 84986 . + 0 ID=cds-YP_010377087.1;Parent=gene-NBT03_gp084;Dbxref=GenBank:YP_010377087.1,GeneID:72551500;Name=OPG105;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp090%3B RNA polymerase%2C 147 kDa subunit (RPO147)%3B similar to VACV-WR L6R and VACV-Cop J6R;gbkey=CDS;gene=OPG105;locus_tag=NBT03_gp084;product=DNA-dependent RNA polymerase subunit rpo147;protein_id=YP_010377087.1 +NC_063383.1 RefSeq gene 84983 85498 . - . ID=gene-NBT03_gp085;Dbxref=GeneID:72551501;Name=OPG106;gbkey=Gene;gene=OPG106;gene_biotype=protein_coding;locus_tag=NBT03_gp085;old_locus_tag=MPXV-M5312_HM12_Rivers-089 +NC_063383.1 RefSeq CDS 84983 85498 . - 0 ID=cds-YP_010377088.1;Parent=gene-NBT03_gp085;Dbxref=GenBank:YP_010377088.1,GeneID:72551501;Name=OPG106;Note=Taxonomic breadth: poxvirinae%3B Old product: MPXVgp091%3B tyrosine%3B Tyr/Ser phosphatase%2C IFN-gamma inhibitor%3B similar to VACV-WR H1L and VACV-Cop H1L;gbkey=CDS;gene=OPG106;locus_tag=NBT03_gp085;product=Tyr/ser protein phosphatase;protein_id=YP_010377088.1 +NC_063383.1 RefSeq gene 85512 86081 . + . ID=gene-NBT03_gp086;Dbxref=GeneID:72551502;Name=OPG107;gbkey=Gene;gene=OPG107;gene_biotype=protein_coding;locus_tag=NBT03_gp086;old_locus_tag=MPXV-M5312_HM12_Rivers-090 +NC_063383.1 RefSeq CDS 85512 86081 . + 0 ID=cds-YP_010377089.1;Parent=gene-NBT03_gp086;Dbxref=GenBank:YP_010377089.1,GeneID:72551502;Name=OPG107;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp092%3B IMV membrane protein%3B similar to VACV-WR H2R and VACV-Cop H2R;gbkey=CDS;gene=OPG107;locus_tag=NBT03_gp086;product=Entry-fusion complex essential component;protein_id=YP_010377089.1 +NC_063383.1 RefSeq gene 86085 87059 . - . ID=gene-NBT03_gp087;Dbxref=GeneID:72551503;Name=OPG108;gbkey=Gene;gene=OPG108;gene_biotype=protein_coding;locus_tag=NBT03_gp087;old_locus_tag=MPXV-M5312_HM12_Rivers-091 +NC_063383.1 RefSeq CDS 86085 87059 . - 0 ID=cds-YP_010377090.1;Parent=gene-NBT03_gp087;Dbxref=GenBank:YP_010377090.1,GeneID:72551503;Name=OPG108;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp093%3B IMV surface membrane protein%3B IMV heparin binding surface protein%3B similar to VACV-WR H3L and VACV-Cop H3L;gbkey=CDS;gene=OPG108;locus_tag=NBT03_gp087;product=IMV heparin binding surface protein;protein_id=YP_010377090.1 +NC_063383.1 RefSeq gene 87060 89447 . - . ID=gene-NBT03_gp088;Dbxref=GeneID:72551504;Name=OPG109;gbkey=Gene;gene=OPG109;gene_biotype=protein_coding;locus_tag=NBT03_gp088;old_locus_tag=MPXV-M5312_HM12_Rivers-092 +NC_063383.1 RefSeq CDS 87060 89447 . - 0 ID=cds-YP_010377091.1;Parent=gene-NBT03_gp088;Dbxref=GenBank:YP_010377091.1,GeneID:72551504;Name=OPG109;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp094%3B virion core RNA polymerase-associated protein%2C RAP94%3B similar to VACV-WR H4L and VACV-Cop H4L;gbkey=CDS;gene=OPG109;locus_tag=NBT03_gp088;product=RNA polymerase-associated transcription-specificity factor RAP94;protein_id=YP_010377091.1 +NC_063383.1 RefSeq gene 89632 90264 . + . ID=gene-NBT03_gp089;Dbxref=GeneID:72551505;Name=OPG110;gbkey=Gene;gene=OPG110;gene_biotype=protein_coding;locus_tag=NBT03_gp089;old_locus_tag=MPXV-M5312_HM12_Rivers-093 +NC_063383.1 RefSeq CDS 89632 90264 . + 0 ID=cds-YP_010377092.1;Parent=gene-NBT03_gp089;Dbxref=GenBank:YP_010377092.1,GeneID:72551505;Name=OPG110;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp095%3B virosome-associated late gene transcription factor%2C VLTF-4%3B Ca2+-binding motif%3B similar to VACV-WR H5R and VACV-Cop H5R;gbkey=CDS;gene=OPG110;locus_tag=NBT03_gp089;product=Late transcription factor VLTF-4 (1);protein_id=YP_010377092.1 +NC_063383.1 RefSeq gene 90265 91209 . + . ID=gene-NBT03_gp090;Dbxref=GeneID:72551506;Name=OPG111;gbkey=Gene;gene=OPG111;gene_biotype=protein_coding;locus_tag=NBT03_gp090;old_locus_tag=MPXV-M5312_HM12_Rivers-094 +NC_063383.1 RefSeq CDS 90265 91209 . + 0 ID=cds-YP_010377093.1;Parent=gene-NBT03_gp090;Dbxref=GenBank:YP_010377093.1,GeneID:72551506;Name=OPG111;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp096%3B DNA topoisomerase type I%3B similar to VACV-WR H6R and VACV-Cop H6R;gbkey=CDS;gene=OPG111;locus_tag=NBT03_gp090;product=DNA topoisomerase type I;protein_id=YP_010377093.1 +NC_063383.1 RefSeq gene 91247 91687 . + . ID=gene-NBT03_gp091;Dbxref=GeneID:72551507;Name=OPG112;gbkey=Gene;gene=OPG112;gene_biotype=protein_coding;locus_tag=NBT03_gp091;old_locus_tag=MPXV-M5312_HM12_Rivers-095 +NC_063383.1 RefSeq CDS 91247 91687 . + 0 ID=cds-YP_010377094.1;Parent=gene-NBT03_gp091;Dbxref=GenBank:YP_010377094.1,GeneID:72551507;Name=OPG112;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp097%3B Viral membrane assembly proteins (VMAP)%3B similar to VACV-WR H7R and VACV-Cop H7R;gbkey=CDS;gene=OPG112;locus_tag=NBT03_gp091;product=Late protein H7;protein_id=YP_010377094.1 +NC_063383.1 RefSeq gene 91731 94268 . + . ID=gene-NBT03_gp092;Dbxref=GeneID:72551508;Name=OPG113;gbkey=Gene;gene=OPG113;gene_biotype=protein_coding;locus_tag=NBT03_gp092;old_locus_tag=MPXV-M5312_HM12_Rivers-096 +NC_063383.1 RefSeq CDS 91731 94268 . + 0 ID=cds-YP_010377095.1;Parent=gene-NBT03_gp092;Dbxref=GenBank:YP_010377095.1,GeneID:72551508;Name=OPG113;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp098%3B mRNA capping enzyme%2C large subunit%3B RNA 5' triphosphatase and RNA guanylyl transferase activities%3B similar to VACV-WR E1R and VACV-Cop D1R;gbkey=CDS;gene=OPG113;locus_tag=NBT03_gp092;product=mRNA capping enzyme large subunit;protein_id=YP_010377095.1 +NC_063383.1 RefSeq gene 94227 94667 . - . ID=gene-NBT03_gp093;Dbxref=GeneID:72551509;Name=OPG114;gbkey=Gene;gene=OPG114;gene_biotype=protein_coding;locus_tag=NBT03_gp093;old_locus_tag=MPXV-M5312_HM12_Rivers-097 +NC_063383.1 RefSeq CDS 94227 94667 . - 0 ID=cds-YP_010377096.1;Parent=gene-NBT03_gp093;Dbxref=GenBank:YP_010377096.1,GeneID:72551509;Name=OPG114;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp099%3B virion core protein%3B similar to VACV-WR E2L and VACV-Cop D2L;gbkey=CDS;gene=OPG114;locus_tag=NBT03_gp093;product=Virion protein D2;protein_id=YP_010377096.1 +NC_063383.1 RefSeq gene 94660 95361 . + . ID=gene-NBT03_gp094;Dbxref=GeneID:72551510;Name=OPG115;gbkey=Gene;gene=OPG115;gene_biotype=protein_coding;locus_tag=NBT03_gp094;old_locus_tag=MPXV-M5312_HM12_Rivers-098 +NC_063383.1 RefSeq CDS 94660 95361 . + 0 ID=cds-YP_010377097.1;Parent=gene-NBT03_gp094;Dbxref=GenBank:YP_010377097.1,GeneID:72551510;Name=OPG115;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp100%3B virion core protein%3B similar to VACV-WR E3R and VACV-Cop D3R;gbkey=CDS;gene=OPG115;locus_tag=NBT03_gp094;product=Virion core protein D3;protein_id=YP_010377097.1 +NC_063383.1 RefSeq gene 95361 96017 . + . ID=gene-NBT03_gp095;Dbxref=GeneID:72551511;Name=OPG116;gbkey=Gene;gene=OPG116;gene_biotype=protein_coding;locus_tag=NBT03_gp095;old_locus_tag=MPXV-M5312_HM12_Rivers-099 +NC_063383.1 RefSeq CDS 95361 96017 . + 0 ID=cds-YP_010377098.1;Parent=gene-NBT03_gp095;Dbxref=GenBank:YP_010377098.1,GeneID:72551511;Name=OPG116;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp101%3B uracil DNA glycosylase%3B DNA polymerase processivity factor%3B similar to VACV-WR E4R and VACV-Cop D4R;gbkey=CDS;gene=OPG116;locus_tag=NBT03_gp095;product=Uracil DNA glycosylase superfamily;protein_id=YP_010377098.1 +NC_063383.1 RefSeq gene 96049 98406 . + . ID=gene-NBT03_gp096;Dbxref=GeneID:72551512;Name=OPG117;gbkey=Gene;gene=OPG117;gene_biotype=protein_coding;locus_tag=NBT03_gp096;old_locus_tag=MPXV-M5312_HM12_Rivers-100 +NC_063383.1 RefSeq CDS 96049 98406 . + 0 ID=cds-YP_010377099.1;Parent=gene-NBT03_gp096;Dbxref=GenBank:YP_010377099.1,GeneID:72551512;Name=OPG117;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp102%3B nucleic acid-independent nucleoside triphosphatase%3B NTPase%2C DNA primase%3B similar to VACV-WR E5R and VACV-Cop D5R;gbkey=CDS;gene=OPG117;locus_tag=NBT03_gp096;product=NTPase (1);protein_id=YP_010377099.1 +NC_063383.1 RefSeq gene 98446 100359 . + . ID=gene-NBT03_gp097;Dbxref=GeneID:72551513;Name=OPG118;gbkey=Gene;gene=OPG118;gene_biotype=protein_coding;locus_tag=NBT03_gp097;old_locus_tag=MPXV-M5312_HM12_Rivers-101 +NC_063383.1 RefSeq CDS 98446 100359 . + 0 ID=cds-YP_010377100.1;Parent=gene-NBT03_gp097;Dbxref=GenBank:YP_010377100.1,GeneID:72551513;Name=OPG118;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp103%3B early transcription factor%2C small subunit%2C VETF-s%3B Morphogenesis%3B similar to VACV-WR E6R and VACV-Cop D6R;gbkey=CDS;gene=OPG118;locus_tag=NBT03_gp097;product=Early transcription factor 70 kDa subunit;protein_id=YP_010377100.1 +NC_063383.1 RefSeq gene 100386 100871 . + . ID=gene-NBT03_gp098;Dbxref=GeneID:72551514;Name=OPG119;gbkey=Gene;gene=OPG119;gene_biotype=protein_coding;locus_tag=NBT03_gp098;old_locus_tag=MPXV-M5312_HM12_Rivers-102 +NC_063383.1 RefSeq CDS 100386 100871 . + 0 ID=cds-YP_010377101.1;Parent=gene-NBT03_gp098;Dbxref=GenBank:YP_010377101.1,GeneID:72551514;Name=OPG119;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp104%3B RNA polymerase%2C 18 kDa subunit (RPO18)%3B similar to VACV-WR E7R and VACV-Cop D7R;gbkey=CDS;gene=OPG119;locus_tag=NBT03_gp098;product=RNA polymerase subunit RPO18;protein_id=YP_010377101.1 +NC_063383.1 RefSeq gene 100834 101748 . - . ID=gene-NBT03_gp099;Dbxref=GeneID:72551515;Name=OPG120;gbkey=Gene;gene=OPG120;gene_biotype=protein_coding;locus_tag=NBT03_gp099;old_locus_tag=MPXV-M5312_HM12_Rivers-103 +NC_063383.1 RefSeq CDS 100834 101748 . - 0 ID=cds-YP_010377102.1;Parent=gene-NBT03_gp099;Dbxref=GenBank:YP_010377102.1,GeneID:72551515;Name=OPG120;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp105%3B IMV surface membrane 32 kDa protein%3B binding to cell surface chondroitin sulfate%3B IMV adsorption to cell surface%3B GAG-binding IMV membrane protein%3B similar to VACV-WR E8L and VACV-Cop D8L;gbkey=CDS;gene=OPG120;locus_tag=NBT03_gp099;product=Carbonic anhydrase;protein_id=YP_010377102.1 +NC_063383.1 RefSeq gene 101790 102431 . + . ID=gene-NBT03_gp100;Dbxref=GeneID:72551516;Name=OPG121;gbkey=Gene;gene=OPG121;gene_biotype=protein_coding;locus_tag=NBT03_gp100;old_locus_tag=MPXV-M5312_HM12_Rivers-104 +NC_063383.1 RefSeq CDS 101790 102431 . + 0 ID=cds-YP_010377103.1;Parent=gene-NBT03_gp100;Dbxref=GenBank:YP_010377103.1,GeneID:72551516;Name=OPG121;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp106%3B Mut-like%3B mRNA decapping enzyme%3B similar to VACV-WR E9R and VACV-Cop D9R;gbkey=CDS;gene=OPG121;locus_tag=NBT03_gp100;product=NUDIX domain protein;protein_id=YP_010377103.1 +NC_063383.1 RefSeq gene 102428 103174 . + . ID=gene-NBT03_gp101;Dbxref=GeneID:72551517;Name=OPG122;gbkey=Gene;gene=OPG122;gene_biotype=protein_coding;locus_tag=NBT03_gp101;old_locus_tag=MPXV-M5312_HM12_Rivers-105 +NC_063383.1 RefSeq CDS 102428 103174 . + 0 ID=cds-YP_010377104.1;Parent=gene-NBT03_gp101;Dbxref=GenBank:YP_010377104.1,GeneID:72551517;Name=OPG122;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp107%3B down regulation of gene expression%3B Mut-like%3B mRNA decapping enzyme%3B similar to VACV-WR E10R and VACV-Cop D10R;gbkey=CDS;gene=OPG122;locus_tag=NBT03_gp101;product=MutT motif protein;protein_id=YP_010377104.1 +NC_063383.1 RefSeq gene 103175 105070 . - . ID=gene-NBT03_gp102;Dbxref=GeneID:72551518;Name=OPG123;gbkey=Gene;gene=OPG123;gene_biotype=protein_coding;locus_tag=NBT03_gp102;old_locus_tag=MPXV-M5312_HM12_Rivers-106 +NC_063383.1 RefSeq CDS 103175 105070 . - 0 ID=cds-YP_010377105.1;Parent=gene-NBT03_gp102;Dbxref=GenBank:YP_010377105.1,GeneID:72551518;Name=OPG123;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp108%3B nucleoside triphosphate phosphohydrolase I%2C NPH I%3B DNA-dependent ATPase%3B early gene transcription termination factor%3B similar to VACV-WR E11L and VACV-Cop D11L;gbkey=CDS;gene=OPG123;locus_tag=NBT03_gp102;product=Nucleoside triphosphatase I;protein_id=YP_010377105.1 +NC_063383.1 RefSeq gene 105105 105968 . - . ID=gene-NBT03_gp103;Dbxref=GeneID:72551519;Name=OPG124;gbkey=Gene;gene=OPG124;gene_biotype=protein_coding;locus_tag=NBT03_gp103;old_locus_tag=MPXV-M5312_HM12_Rivers-107 +NC_063383.1 RefSeq CDS 105105 105968 . - 0 ID=cds-YP_010377106.1;Parent=gene-NBT03_gp103;Dbxref=GenBank:YP_010377106.1,GeneID:72551519;Name=OPG124;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp109%3B mRNA capping enzyme small subunit%3B mRNA (guanine-N7-)-methyl-transferase%3B transcription initiation factor%3B similar to VACV-WR E12L and VACV-Cop D12L;gbkey=CDS;gene=OPG124;locus_tag=NBT03_gp103;product=mRNA capping enzyme small subunit;protein_id=YP_010377106.1 +NC_063383.1 RefSeq gene 105999 107654 . - . ID=gene-NBT03_gp104;Dbxref=GeneID:72551520;Name=OPG125;gbkey=Gene;gene=OPG125;gene_biotype=protein_coding;locus_tag=NBT03_gp104;old_locus_tag=MPXV-M5312_HM12_Rivers-108 +NC_063383.1 RefSeq CDS 105999 107654 . - 0 ID=cds-YP_010377107.1;Parent=gene-NBT03_gp104;Dbxref=GenBank:YP_010377107.1,GeneID:72551520;Name=OPG125;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp110%3B protein needed for the formation of immature IMV surface membrane%3B Trimeric virion coat protein (rifampicin res)%3B similar to VACV-WR E13L and VACV-Cop D13L;gbkey=CDS;gene=OPG125;locus_tag=NBT03_gp104;product=Rifampicin resistance protein;protein_id=YP_010377107.1 +NC_063383.1 RefSeq gene 107678 108130 . - . ID=gene-NBT03_gp105;Dbxref=GeneID:72551521;Name=OPG126;gbkey=Gene;gene=OPG126;gene_biotype=protein_coding;locus_tag=NBT03_gp105;old_locus_tag=MPXV-M5312_HM12_Rivers-109 +NC_063383.1 RefSeq CDS 107678 108130 . - 0 ID=cds-YP_010377108.1;Parent=gene-NBT03_gp105;Dbxref=GenBank:YP_010377108.1,GeneID:72551521;Name=OPG126;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp111%3B late gene transcription factor%2C VLTF-2%3B similar to VACV-WR A1L and VACV-Cop A1L;gbkey=CDS;gene=OPG126;locus_tag=NBT03_gp105;product=Late transcription factor VLTF-2 (2);protein_id=YP_010377108.1 +NC_063383.1 RefSeq gene 108151 108825 . - . ID=gene-NBT03_gp106;Dbxref=GeneID:72551522;Name=OPG127;gbkey=Gene;gene=OPG127;gene_biotype=protein_coding;locus_tag=NBT03_gp106;old_locus_tag=MPXV-M5312_HM12_Rivers-110 +NC_063383.1 RefSeq CDS 108151 108825 . - 0 ID=cds-YP_010377109.1;Parent=gene-NBT03_gp106;Dbxref=GenBank:YP_010377109.1,GeneID:72551522;Name=OPG127;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp112%3B late gene transcription factor%2C VLTF-3%3B zinc binding%3B similar to VACV-WR A2L and VACV-Cop A2L;gbkey=CDS;gene=OPG127;locus_tag=NBT03_gp106;product=Late transcription factor VLTF-3 (1);protein_id=YP_010377109.1 +NC_063383.1 RefSeq gene 108822 109055 . - . ID=gene-NBT03_gp107;Dbxref=GeneID:72551523;Name=OPG128;gbkey=Gene;gene=OPG128;gene_biotype=protein_coding;locus_tag=NBT03_gp107;old_locus_tag=MPXV-M5312_HM12_Rivers-111 +NC_063383.1 RefSeq CDS 108822 109055 . - 0 ID=cds-YP_010377110.1;Parent=gene-NBT03_gp107;Dbxref=GenBank:YP_010377110.1,GeneID:72551523;Name=OPG128;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp113%3B S-S bond formation pathway protein%3B similar to VACV-WR A3L and VACV-Cop A2.5L;gbkey=CDS;gene=OPG128;locus_tag=NBT03_gp107;product=S-S bond formation pathway protein;protein_id=YP_010377110.1 +NC_063383.1 RefSeq gene 109070 111004 . - . ID=gene-NBT03_gp108;Dbxref=GeneID:72551524;Name=OPG129;gbkey=Gene;gene=OPG129;gene_biotype=protein_coding;locus_tag=NBT03_gp108;old_locus_tag=MPXV-M5312_HM12_Rivers-112 +NC_063383.1 RefSeq CDS 109070 111004 . - 0 ID=cds-YP_010377111.1;Parent=gene-NBT03_gp108;Dbxref=GenBank:YP_010377111.1,GeneID:72551524;Name=OPG129;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp114%3B major virion core protein p4b%3B P4b precursor%3B similar to VACV-WR A4L and VACV-Cop A3L;gbkey=CDS;gene=OPG129;locus_tag=NBT03_gp108;product=Virion core protein P4b;protein_id=YP_010377111.1 +NC_063383.1 RefSeq gene 111057 111902 . - . ID=gene-NBT03_gp109;Dbxref=GeneID:72551525;Name=OPG130;gbkey=Gene;gene=OPG130;gene_biotype=protein_coding;locus_tag=NBT03_gp109;old_locus_tag=MPXV-M5312_HM12_Rivers-113 +NC_063383.1 RefSeq CDS 111057 111902 . - 0 ID=cds-YP_010377112.1;Parent=gene-NBT03_gp109;Dbxref=GenBank:YP_010377112.1,GeneID:72551525;Name=OPG130;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp115%3B 39 kDa immunodominant virion core protein needed for the progression of IV to infectious IMV%3B 39kDa virion core protein%3B similar to VACV-WR A5L and VACV-Cop A4L;gbkey=CDS;gene=OPG130;locus_tag=NBT03_gp109;product=A5L protein-like;protein_id=YP_010377112.1 +NC_063383.1 RefSeq gene 111940 112425 . + . ID=gene-NBT03_gp110;Dbxref=GeneID:72551526;Name=OPG131;gbkey=Gene;gene=OPG131;gene_biotype=protein_coding;locus_tag=NBT03_gp110;old_locus_tag=MPXV-M5312_HM12_Rivers-114 +NC_063383.1 RefSeq CDS 111940 112425 . + 0 ID=cds-YP_010377113.1;Parent=gene-NBT03_gp110;Dbxref=GenBank:YP_010377113.1,GeneID:72551526;Name=OPG131;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp116%3B precursor of RNA polymerase 22 kDa and 21 kDa%3B RNA polymerase subunit (RPO19)%3B similar to VACV-WR A6R and VACV-Cop A5R;gbkey=CDS;gene=OPG131;locus_tag=NBT03_gp110;product=DNA-directed RNA polymerase 19 kDa subunit;protein_id=YP_010377113.1 +NC_063383.1 RefSeq gene 112422 113540 . - . ID=gene-NBT03_gp111;Dbxref=GeneID:72551527;Name=OPG132;gbkey=Gene;gene=OPG132;gene_biotype=protein_coding;locus_tag=NBT03_gp111;old_locus_tag=MPXV-M5312_HM12_Rivers-115 +NC_063383.1 RefSeq CDS 112422 113540 . - 0 ID=cds-YP_010377114.1;Parent=gene-NBT03_gp111;Dbxref=GenBank:YP_010377114.1,GeneID:72551527;Name=OPG132;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp117%3B Viral membrane assembly proteins (VMAP)%2C core protein%3B similar to VACV-WR A7L and VACV-Cop A6L;gbkey=CDS;gene=OPG132;locus_tag=NBT03_gp111;product=Virion morphogenesis protein;protein_id=YP_010377114.1 +NC_063383.1 RefSeq gene 113564 115696 . - . ID=gene-NBT03_gp112;Dbxref=GeneID:72551528;Name=OPG133;gbkey=Gene;gene=OPG133;gene_biotype=protein_coding;locus_tag=NBT03_gp112;old_locus_tag=MPXV-M5312_HM12_Rivers-116 +NC_063383.1 RefSeq CDS 113564 115696 . - 0 ID=cds-YP_010377115.1;Parent=gene-NBT03_gp112;Dbxref=GenBank:YP_010377115.1,GeneID:72551528;Name=OPG133;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp118%3B early transcription factor%2C large subunit%2C VETF-L%3B needed for morphogenesis of the virion core%3B similar to VACV-WR A8L and VACV-Cop A7L;gbkey=CDS;gene=OPG133;locus_tag=NBT03_gp112;product=Early transcription factor 82 kDa subunit;protein_id=YP_010377115.1 +NC_063383.1 RefSeq gene 115750 116628 . + . ID=gene-NBT03_gp113;Dbxref=GeneID:72551529;Name=OPG134;gbkey=Gene;gene=OPG134;gene_biotype=protein_coding;locus_tag=NBT03_gp113;old_locus_tag=MPXV-M5312_HM12_Rivers-117 +NC_063383.1 RefSeq CDS 115750 116628 . + 0 ID=cds-YP_010377116.1;Parent=gene-NBT03_gp113;Dbxref=GenBank:YP_010377116.1,GeneID:72551529;Name=OPG134;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp119%3B intermediate transcription factor%2C VITF-3 34kda subunit%2C 34 kDa%3B similar to VACV-WR A9R and VACV-Cop A8R;gbkey=CDS;gene=OPG134;locus_tag=NBT03_gp113;product=Intermediate transcription factor VITF-3 (1);protein_id=YP_010377116.1 +NC_063383.1 RefSeq gene 116609 116911 . - . ID=gene-NBT03_gp114;Dbxref=GeneID:72551530;Name=OPG135;gbkey=Gene;gene=OPG135;gene_biotype=protein_coding;locus_tag=NBT03_gp114;old_locus_tag=MPXV-M5312_HM12_Rivers-118 +NC_063383.1 RefSeq CDS 116609 116911 . - 0 ID=cds-YP_010377117.1;Parent=gene-NBT03_gp114;Dbxref=GenBank:YP_010377117.1,GeneID:72551530;Name=OPG135;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp120%3B Viral membrane associated%2C early morphogenesis protein%3B similar to VACV-WR A10L and VACV-Cop A9L;gbkey=CDS;gene=OPG135;locus_tag=NBT03_gp114;product=IMV membrane protein A9;protein_id=YP_010377117.1 +NC_063383.1 RefSeq gene 116912 119587 . - . ID=gene-NBT03_gp115;Dbxref=GeneID:72551531;Name=OPG136;gbkey=Gene;gene=OPG136;gene_biotype=protein_coding;locus_tag=NBT03_gp115;old_locus_tag=MPXV-M5312_HM12_Rivers-119 +NC_063383.1 RefSeq CDS 116912 119587 . - 0 ID=cds-YP_010377118.1;Parent=gene-NBT03_gp115;Dbxref=GenBank:YP_010377118.1,GeneID:72551531;Name=OPG136;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp121%3B major virion core protein p4a%3B P4a precursor%3B similar to VACV-WR A11L and VACV-Cop A10L;gbkey=CDS;gene=OPG136;locus_tag=NBT03_gp115;product=Virion core protein P4a;protein_id=YP_010377118.1 +NC_063383.1 RefSeq gene 119602 120558 . + . ID=gene-NBT03_gp116;Dbxref=GeneID:72551532;Name=OPG137;gbkey=Gene;gene=OPG137;gene_biotype=protein_coding;locus_tag=NBT03_gp116;old_locus_tag=MPXV-M5312_HM12_Rivers-120 +NC_063383.1 RefSeq CDS 119602 120558 . + 0 ID=cds-YP_010377119.1;Parent=gene-NBT03_gp116;Dbxref=GenBank:YP_010377119.1,GeneID:72551532;Name=OPG137;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp122%3B Viral membrane assembly proteins (VMAP)%3B similar to VACV-WR A12R and VACV-Cop A11R;gbkey=CDS;gene=OPG137;locus_tag=NBT03_gp116;product=Viral membrane formation protein;protein_id=YP_010377119.1 +NC_063383.1 RefSeq gene 120560 121132 . - . ID=gene-NBT03_gp117;Dbxref=GeneID:72551533;Name=OPG138;gbkey=Gene;gene=OPG138;gene_biotype=protein_coding;locus_tag=NBT03_gp117;old_locus_tag=MPXV-M5312_HM12_Rivers-121 +NC_063383.1 RefSeq CDS 120560 121132 . - 0 ID=cds-YP_010377120.1;Parent=gene-NBT03_gp117;Dbxref=GenBank:YP_010377120.1,GeneID:72551533;Name=OPG138;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp123%3B Virion core and cleavage processing protein%3B similar to VACV-WR A13L and VACV-Cop A12L;gbkey=CDS;gene=OPG138;locus_tag=NBT03_gp117;product=A12 protein;protein_id=YP_010377120.1 +NC_063383.1 RefSeq gene 121156 121368 . - . ID=gene-NBT03_gp118;Dbxref=GeneID:72551534;Name=OPG139;gbkey=Gene;gene=OPG139;gene_biotype=protein_coding;locus_tag=NBT03_gp118;old_locus_tag=MPXV-M5312_HM12_Rivers-122 +NC_063383.1 RefSeq CDS 121156 121368 . - 0 ID=cds-YP_010377121.1;Parent=gene-NBT03_gp118;Dbxref=GenBank:YP_010377121.1,GeneID:72551534;Name=OPG139;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp124%3B IMV inner and outer membrane protein%3B virion maturation%3B similar to VACV-WR A14L and VACV-Cop A13L;gbkey=CDS;gene=OPG139;locus_tag=NBT03_gp118;product=IMV membrane protein A13L;protein_id=YP_010377121.1 +NC_063383.1 RefSeq gene 121474 121746 . - . ID=gene-NBT03_gp119;Dbxref=GeneID:72551535;Name=OPG140;gbkey=Gene;gene=OPG140;gene_biotype=protein_coding;locus_tag=NBT03_gp119;old_locus_tag=MPXV-M5312_HM12_Rivers-123 +NC_063383.1 RefSeq CDS 121474 121746 . - 0 ID=cds-YP_010377122.1;Parent=gene-NBT03_gp119;Dbxref=GenBank:YP_010377122.1,GeneID:72551535;Name=OPG140;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp125%3B IMV inner membrane protein%3B Essential IMV membrane protein%3B similar to VACV-WR A15L and VACV-Cop A14L;gbkey=CDS;gene=OPG140;locus_tag=NBT03_gp119;product=IMV membrane protein A14;protein_id=YP_010377122.1 +NC_063383.1 RefSeq gene 121763 121924 . - . ID=gene-NBT03_gp120;Dbxref=GeneID:72551536;Name=OPG141;gbkey=Gene;gene=OPG141;gene_biotype=protein_coding;locus_tag=NBT03_gp120;old_locus_tag=MPXV-M5312_HM12_Rivers-124 +NC_063383.1 RefSeq CDS 121763 121924 . - 0 ID=cds-YP_010377123.1;Parent=gene-NBT03_gp120;Dbxref=GenBank:YP_010377123.1,GeneID:72551536;Name=OPG141;Note=Taxonomic breadth: chordopoxvirinae%3B Non-essential IMV membrane protein%3B similar to VACV-WR A15.5L and VACV-Cop A14.5L;gbkey=CDS;gene=OPG141;locus_tag=NBT03_gp120;product=DUF1029 domain protein;protein_id=YP_010377123.1 +NC_063383.1 RefSeq gene 121914 122198 . - . ID=gene-NBT03_gp121;Dbxref=GeneID:72551537;Name=OPG142;gbkey=Gene;gene=OPG142;gene_biotype=protein_coding;locus_tag=NBT03_gp121;old_locus_tag=MPXV-M5312_HM12_Rivers-125 +NC_063383.1 RefSeq CDS 121914 122198 . - 0 ID=cds-YP_010377124.1;Parent=gene-NBT03_gp121;Dbxref=GenBank:YP_010377124.1,GeneID:72551537;Name=OPG142;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp126%3B Core protein%3B similar to VACV-WR A16L and VACV-Cop A15L;gbkey=CDS;gene=OPG142;locus_tag=NBT03_gp121;product=Core protein A15;protein_id=YP_010377124.1 +NC_063383.1 RefSeq gene 122182 123315 . - . ID=gene-NBT03_gp122;Dbxref=GeneID:72551538;Name=OPG143;gbkey=Gene;gene=OPG143;gene_biotype=protein_coding;locus_tag=NBT03_gp122;old_locus_tag=MPXV-M5312_HM12_Rivers-126 +NC_063383.1 RefSeq CDS 122182 123315 . - 0 ID=cds-YP_010377125.1;Parent=gene-NBT03_gp122;Dbxref=GenBank:YP_010377125.1,GeneID:72551538;Name=OPG143;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp127%3B soluble myristylated protein%3B essential for entry/fusion%3B similar to VACV-WR A17L and VACV-Cop A16L;gbkey=CDS;gene=OPG143;locus_tag=NBT03_gp122;product=Myristylated protein;protein_id=YP_010377125.1 +NC_063383.1 RefSeq gene 123318 123932 . - . ID=gene-NBT03_gp123;Dbxref=GeneID:72551539;Name=OPG144;gbkey=Gene;gene=OPG144;gene_biotype=protein_coding;locus_tag=NBT03_gp123;old_locus_tag=MPXV-M5312_HM12_Rivers-127 +NC_063383.1 RefSeq CDS 123318 123932 . - 0 ID=cds-YP_010377126.1;Parent=gene-NBT03_gp123;Dbxref=GenBank:YP_010377126.1,GeneID:72551539;Name=OPG144;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp128%3B IMV surface membrane protein%3B early function in virion morphgenesis%3B similar to VACV-WR A18L and VACV-Cop A17L;gbkey=CDS;gene=OPG144;locus_tag=NBT03_gp123;product=IMV membrane protein P21;protein_id=YP_010377126.1 +NC_063383.1 RefSeq gene 123947 125425 . + . ID=gene-NBT03_gp124;Dbxref=GeneID:72551540;Name=OPG145;gbkey=Gene;gene=OPG145;gene_biotype=protein_coding;locus_tag=NBT03_gp124;old_locus_tag=MPXV-M5312_HM12_Rivers-128 +NC_063383.1 RefSeq CDS 123947 125425 . + 0 ID=cds-YP_010377127.1;Parent=gene-NBT03_gp124;Dbxref=GenBank:YP_010377127.1,GeneID:72551540;Name=OPG145;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp129%3B virion core associated DNA helicase%3B post-replicative negative transcription elongation factor%3B transcript release factor%3B similar to VACV-WR A19R and VACV-Cop A18R;gbkey=CDS;gene=OPG145;locus_tag=NBT03_gp124;product=DNA helicase;protein_id=YP_010377127.1 +NC_063383.1 RefSeq gene 125406 125639 . - . ID=gene-NBT03_gp125;Dbxref=GeneID:72551541;Name=OPG146;gbkey=Gene;gene=OPG146;gene_biotype=protein_coding;locus_tag=NBT03_gp125;old_locus_tag=MPXV-M5312_HM12_Rivers-129 +NC_063383.1 RefSeq CDS 125406 125639 . - 0 ID=cds-YP_010377128.1;Parent=gene-NBT03_gp125;Dbxref=GenBank:YP_010377128.1,GeneID:72551541;Name=OPG146;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp130%3B Zinc finger-like protein%3B similar to VACV-WR A20L and VACV-Cop A19L;gbkey=CDS;gene=OPG146;locus_tag=NBT03_gp125;product=Zinc finger-like protein (1);protein_id=YP_010377128.1 +NC_063383.1 RefSeq gene 125640 125987 . - . ID=gene-NBT03_gp126;Dbxref=GeneID:72551542;Name=OPG147;gbkey=Gene;gene=OPG147;gene_biotype=protein_coding;locus_tag=NBT03_gp126;old_locus_tag=MPXV-M5312_HM12_Rivers-130 +NC_063383.1 RefSeq CDS 125640 125987 . - 0 ID=cds-YP_010377129.1;Parent=gene-NBT03_gp126;Dbxref=GenBank:YP_010377129.1,GeneID:72551542;Name=OPG147;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp131%3B IMV membrane protein%2C entry/fusion complex component%3B similar to VACV-WR A21L and VACV-Cop A21L;gbkey=CDS;gene=OPG147;locus_tag=NBT03_gp126;product=IMV membrane protein A21;protein_id=YP_010377129.1 +NC_063383.1 RefSeq gene 125986 127266 . + . ID=gene-NBT03_gp127;Dbxref=GeneID:72551543;Name=OPG148;gbkey=Gene;gene=OPG148;gene_biotype=protein_coding;locus_tag=NBT03_gp127;old_locus_tag=MPXV-M5312_HM12_Rivers-131 +NC_063383.1 RefSeq CDS 125986 127266 . + 0 ID=cds-YP_010377130.1;Parent=gene-NBT03_gp127;Dbxref=GenBank:YP_010377130.1,GeneID:72551543;Name=OPG148;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp132%3B processivity factor for the viral DNA polymerase%2C VPF%3B similar to VACV-WR A22R and VACV-Cop A20R;gbkey=CDS;gene=OPG148;locus_tag=NBT03_gp127;product=DNA polymerase processivity factor;protein_id=YP_010377130.1 +NC_063383.1 RefSeq gene 127196 127759 . + . ID=gene-NBT03_gp128;Dbxref=GeneID:72551544;Name=OPG149;gbkey=Gene;gene=OPG149;gene_biotype=protein_coding;locus_tag=NBT03_gp128;old_locus_tag=MPXV-M5312_HM12_Rivers-132 +NC_063383.1 RefSeq CDS 127196 127759 . + 0 ID=cds-YP_010377131.1;Parent=gene-NBT03_gp128;Dbxref=GenBank:YP_010377131.1,GeneID:72551544;Name=OPG149;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp133%3B Holliday junction resolvase%3B similar to VACV-WR A23R and VACV-Cop A22R;gbkey=CDS;gene=OPG149;locus_tag=NBT03_gp128;product=Holliday junction resolvase;protein_id=YP_010377131.1 +NC_063383.1 RefSeq gene 127779 128927 . + . ID=gene-NBT03_gp129;Dbxref=GeneID:72551545;Name=OPG150;gbkey=Gene;gene=OPG150;gene_biotype=protein_coding;locus_tag=NBT03_gp129;old_locus_tag=MPXV-M5312_HM12_Rivers-133 +NC_063383.1 RefSeq CDS 127779 128927 . + 0 ID=cds-YP_010377132.1;Parent=gene-NBT03_gp129;Dbxref=GenBank:YP_010377132.1,GeneID:72551545;Name=OPG150;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp134%3B intermediate transcription factor%2C VITF-3%2C 45 kDa subunit%3B similar to VACV-WR A24R and VACV-Cop A23R;gbkey=CDS;gene=OPG150;locus_tag=NBT03_gp129;product=Intermediate transcription factor VITF-3 (2);protein_id=YP_010377132.1 +NC_063383.1 RefSeq gene 128924 132418 . + . ID=gene-NBT03_gp130;Dbxref=GeneID:72551546;Name=OPG151;gbkey=Gene;gene=OPG151;gene_biotype=protein_coding;locus_tag=NBT03_gp130;old_locus_tag=MPXV-M5312_HM12_Rivers-134 +NC_063383.1 RefSeq CDS 128924 132418 . + 0 ID=cds-YP_010377133.1;Parent=gene-NBT03_gp130;Dbxref=GenBank:YP_010377133.1,GeneID:72551546;Name=OPG151;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp135%3B RNA polymerase%2C 132 kDa subunit (RPO132)%3B similar to VACV-WR A25R and VACV-Cop A24R;gbkey=CDS;gene=OPG151;locus_tag=NBT03_gp130;product=DNA-dependent RNA polymerase subunit rpo132;protein_id=YP_010377133.1 +NC_063383.1 RefSeq sequence_feature 132396 136092 . - . ID=id-NC_063383.1:132396..136092;exon_number=OPG152;gbkey=misc_feature;number=OPG152 +NC_063383.1 RefSeq gene 136138 137667 . - . ID=gene-NBT03_gp131;Dbxref=GeneID:72551547;Name=OPG153;gbkey=Gene;gene=OPG153;gene_biotype=protein_coding;locus_tag=NBT03_gp131;old_locus_tag=MPXV-M5312_HM12_Rivers-137 +NC_063383.1 RefSeq CDS 136138 137667 . - 0 ID=cds-YP_010377134.1;Parent=gene-NBT03_gp131;Dbxref=GenBank:YP_010377134.1,GeneID:72551547;Name=OPG153;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp138%3B major component of IMV surface tubules%3B A-type inclusion protein%3B P4c precursor%3B similar to VACV-WR A28L and VACV-Cop A26L;gbkey=CDS;gene=OPG153;locus_tag=NBT03_gp131;product=Orthopoxvirus A26L/A30L protein;protein_id=YP_010377134.1 +NC_063383.1 RefSeq gene 137718 138050 . - . ID=gene-NBT03_gp132;Dbxref=GeneID:72551548;Name=OPG154;gbkey=Gene;gene=OPG154;gene_biotype=protein_coding;locus_tag=NBT03_gp132;old_locus_tag=MPXV-M5312_HM12_Rivers-138 +NC_063383.1 RefSeq CDS 137718 138050 . - 0 ID=cds-YP_010377135.1;Parent=gene-NBT03_gp132;Dbxref=GenBank:YP_010377135.1,GeneID:72551548;Name=OPG154;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp139%3B IMV surface membrane 14 kDa fusion protein%3B binding to cell surface heparan%3B similar to VACV-WR A29L and VACV-Cop A27L;gbkey=CDS;gene=OPG154;locus_tag=NBT03_gp132;product=IMV surface fusion protein;protein_id=YP_010377135.1 +NC_063383.1 RefSeq gene 138051 138491 . - . ID=gene-NBT03_gp133;Dbxref=GeneID:72551549;Name=OPG155;gbkey=Gene;gene=OPG155;gene_biotype=protein_coding;locus_tag=NBT03_gp133;old_locus_tag=MPXV-M5312_HM12_Rivers-139 +NC_063383.1 RefSeq CDS 138051 138491 . - 0 ID=cds-YP_010377136.1;Parent=gene-NBT03_gp133;Dbxref=GenBank:YP_010377136.1,GeneID:72551549;Name=OPG155;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp140%3B IMV MP/Virus entry%3B similar to VACV-WR A30L and VACV-Cop A28L;gbkey=CDS;gene=OPG155;locus_tag=NBT03_gp133;product=Envelope protein A28 homolog;protein_id=YP_010377136.1 +NC_063383.1 RefSeq gene 138492 139409 . - . ID=gene-NBT03_gp134;Dbxref=GeneID:72551550;Name=OPG156;gbkey=Gene;gene=OPG156;gene_biotype=protein_coding;locus_tag=NBT03_gp134;old_locus_tag=MPXV-M5312_HM12_Rivers-140 +NC_063383.1 RefSeq CDS 138492 139409 . - 0 ID=cds-YP_010377137.1;Parent=gene-NBT03_gp134;Dbxref=GenBank:YP_010377137.1,GeneID:72551550;Name=OPG156;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp141%3B RNA polymerase%2C 35 kDa subunit (RPO35)%3B similar to VACV-WR A31L and VACV-Cop A29L;gbkey=CDS;gene=OPG156;locus_tag=NBT03_gp134;product=DNA-directed RNA polymerase 35 kDa subunit;protein_id=YP_010377137.1 +NC_063383.1 RefSeq gene 139372 139608 . - . ID=gene-NBT03_gp135;Dbxref=GeneID:72551551;Name=OPG157;gbkey=Gene;gene=OPG157;gene_biotype=protein_coding;locus_tag=NBT03_gp135;old_locus_tag=MPXV-M5312_HM12_Rivers-141 +NC_063383.1 RefSeq CDS 139372 139608 . - 0 ID=cds-YP_010377138.1;Parent=gene-NBT03_gp135;Dbxref=GenBank:YP_010377138.1,GeneID:72551551;Name=OPG157;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp142%3B IMV protein%3B similar to VACV-WR A32L and VACV-Cop A30L;gbkey=CDS;gene=OPG157;locus_tag=NBT03_gp135;product=IMV membrane protein A30;protein_id=YP_010377138.1 +NC_063383.1 RefSeq gene 139641 139769 . - . ID=gene-NBT03_gp136;Dbxref=GeneID:72551552;Name=OPG158;gbkey=Gene;gene=OPG158;gene_biotype=protein_coding;locus_tag=NBT03_gp136;old_locus_tag=MPXV-M5312_HM12_Rivers-142 +NC_063383.1 RefSeq CDS 139641 139769 . - 0 ID=cds-YP_010377139.1;Parent=gene-NBT03_gp136;Dbxref=GenBank:YP_010377139.1,GeneID:72551552;Name=OPG158;Note=Viral membrane assembly proteins (VMAP)%3B similar to VACV-Cop A30.5L;gbkey=CDS;gene=OPG158;locus_tag=NBT03_gp136;product=A32.5L;protein_id=YP_010377139.1 +NC_063383.1 RefSeq gene 139768 140205 . + . ID=gene-NBT03_gp137;Dbxref=GeneID:72551553;Name=OPG159;gbkey=Gene;gene=OPG159;gene_biotype=protein_coding;locus_tag=NBT03_gp137;old_locus_tag=MPXV-M5312_HM12_Rivers-143 +NC_063383.1 RefSeq CDS 139768 140205 . + 0 ID=cds-YP_010377140.1;Parent=gene-NBT03_gp137;Dbxref=GenBank:YP_010377140.1,GeneID:72551553;Name=OPG159;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp143%3B Hypothetical protein%3B similar to VACV-WR A33R and VACV-Cop A31R;gbkey=CDS;gene=OPG159;locus_tag=NBT03_gp137;product=CPXV166 protein;protein_id=YP_010377140.1 +NC_063383.1 RefSeq gene 140172 141074 . - . ID=gene-NBT03_gp138;Dbxref=GeneID:72551554;Name=OPG160;gbkey=Gene;gene=OPG160;gene_biotype=protein_coding;locus_tag=NBT03_gp138;old_locus_tag=MPXV-M5312_HM12_Rivers-144 +NC_063383.1 RefSeq CDS 140172 141074 . - 0 ID=cds-YP_010377141.1;Parent=gene-NBT03_gp138;Dbxref=GenBank:YP_010377141.1,GeneID:72551554;Name=OPG160;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp144%3B DNA packaging into virion%3B NTP-binding motif A%3B ATPase/DNA packaging protein%3B similar to VACV-WR A34L and VACV-Cop A32L;gbkey=CDS;gene=OPG160;locus_tag=NBT03_gp138;product=ATPase A32;protein_id=YP_010377141.1 +NC_063383.1 RefSeq gene 141102 141647 . + . ID=gene-NBT03_gp139;Dbxref=GeneID:72551555;Name=OPG161;gbkey=Gene;gene=OPG161;gene_biotype=protein_coding;locus_tag=NBT03_gp139;old_locus_tag=MPXV-M5312_HM12_Rivers-145 +NC_063383.1 RefSeq CDS 141102 141647 . + 0 ID=cds-YP_010377142.1;Parent=gene-NBT03_gp139;Dbxref=GenBank:YP_010377142.1,GeneID:72551555;Name=OPG161;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp145%3B EEV envelope glycoprotein%2C needed for formation of actin-containing microvilli and cell-to-cell spread of virion%3B interacts with VAC A36R%3B EEV membrane phosphoglycoprotein%2C C-type lectin-like domain%3B similar to VACV-WR A35R and VACV-Cop A33R;gbkey=CDS;gene=OPG161;locus_tag=NBT03_gp139;product=EEV glycoprotein (1);protein_id=YP_010377142.1 +NC_063383.1 RefSeq gene 141652 142158 . + . ID=gene-NBT03_gp140;Dbxref=GeneID:72551556;Name=OPG162;gbkey=Gene;gene=OPG162;gene_biotype=protein_coding;locus_tag=NBT03_gp140;old_locus_tag=MPXV-M5312_HM12_Rivers-146 +NC_063383.1 RefSeq CDS 141652 142158 . + 0 ID=cds-YP_010377143.1;Parent=gene-NBT03_gp140;Dbxref=GenBank:YP_010377143.1,GeneID:72551556;Name=OPG162;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp146%3B EEV envelope glycoprotein%2C lectin-like%3B required for infectivity of EEV%2C formation of actin-containing microvilli%2C and cell-to-cell spread of virion%3B C-type lectin-like IEV/EEV glycoprotein%3B similar to VACV-WR A36R and VACV-Cop A34R;gbkey=CDS;gene=OPG162;locus_tag=NBT03_gp140;product=EEV glycoprotein (2);protein_id=YP_010377143.1 +NC_063383.1 RefSeq gene 142202 142732 . + . ID=gene-NBT03_gp141;Dbxref=GeneID:72551557;Name=OPG163;gbkey=Gene;gene=OPG163;gene_biotype=protein_coding;locus_tag=NBT03_gp141;old_locus_tag=MPXV-M5312_HM12_Rivers-147 +NC_063383.1 RefSeq CDS 142202 142732 . + 0 ID=cds-YP_010377144.1;Parent=gene-NBT03_gp141;Dbxref=GenBank:YP_010377144.1,GeneID:72551557;Name=OPG163;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp147%3B MHC class II antigen presentation inhibitor%3B similar to VACV-WR A37R and VACV-Cop A35R;gbkey=CDS;gene=OPG163;locus_tag=NBT03_gp141;product=MHC class II antigen presentation inhibitor;protein_id=YP_010377144.1 +NC_063383.1 RefSeq gene 142778 143464 . + . ID=gene-NBT03_gp142;Dbxref=GeneID:72551558;Name=OPG164;gbkey=Gene;gene=OPG164;gene_biotype=protein_coding;locus_tag=NBT03_gp142;old_locus_tag=MPXV-M5312_HM12_Rivers-148 +NC_063383.1 RefSeq CDS 142778 143464 . + 0 ID=cds-YP_010377145.1;Parent=gene-NBT03_gp142;Dbxref=GenBank:YP_010377145.1,GeneID:72551558;Name=OPG164;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp148%3B IEV but not CEV envelope protein%3B plays critical role for actin tail formation%3B interacts with VAC A33R and A34R%3B IEV transmembrane phosphoprotein%3B similar to VACV-WR A38R and VACV-Cop A36R;gbkey=CDS;gene=OPG164;locus_tag=NBT03_gp142;product=IEV transmembrane phosphoprotein;protein_id=YP_010377145.1 +NC_063383.1 RefSeq gene 143516 144322 . + . ID=gene-NBT03_gp143;Dbxref=GeneID:72551559;Name=OPG165;gbkey=Gene;gene=OPG165;gene_biotype=protein_coding;locus_tag=NBT03_gp143;old_locus_tag=MPXV-M5312_HM12_Rivers-149 +NC_063383.1 RefSeq CDS 143516 144322 . + 0 ID=cds-YP_010377146.1;Parent=gene-NBT03_gp143;Dbxref=GenBank:YP_010377146.1,GeneID:72551559;Name=OPG165;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp149%3B Hypothetical protein%3B similar to VACV-WR A39R and VACV-Cop A37R;gbkey=CDS;gene=OPG165;locus_tag=NBT03_gp143;product=CPXV173 protein;protein_id=YP_010377146.1 +NC_063383.1 RefSeq gene 144398 144577 . + . ID=gene-NBT03_gp144;Dbxref=GeneID:72551560;Name=OPG166;gbkey=Gene;gene=OPG166;gene_biotype=protein_coding;locus_tag=NBT03_gp144 +NC_063383.1 RefSeq CDS 144398 144577 . + 0 ID=cds-YP_010415322.1;Parent=gene-NBT03_gp144;Dbxref=GenBank:YP_010415322.1,GeneID:72551560;Name=OPG166;Note=Hypothetical protein%3B according to YP_233043.1%2C this VACV-WR protein was purified by sucrose gradient centrifugation%3B similar to VACWR161 and VARGAR-A43R;gbkey=CDS;gene=OPG166;locus_tag=NBT03_gp144;product=hypothetical protein;protein_id=YP_010415322.1 +NC_063383.1 RefSeq gene 144574 145407 . - . ID=gene-NBT03_gp145;Dbxref=GeneID:72551561;Name=OPG167;gbkey=Gene;gene=OPG167;gene_biotype=protein_coding;locus_tag=NBT03_gp145;old_locus_tag=MPXV-M5312_HM12_Rivers-150 +NC_063383.1 RefSeq CDS 144574 145407 . - 0 ID=cds-YP_010377147.1;Parent=gene-NBT03_gp145;Dbxref=GenBank:YP_010377147.1,GeneID:72551561;Name=OPG167;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp150%3B integral membrane glycoprotein%3B immunoglobulin-like%3B regulation of the influx of extracellular Ca2+%3B CD47-like%3B similar to VACV-WR A40L and VACV-Cop A38L;gbkey=CDS;gene=OPG167;locus_tag=NBT03_gp145;product=CD47-like protein;protein_id=YP_010377147.1 +NC_063383.1 RefSeq sequence_feature 145423 145856 . + . ID=id-NC_063383.1:145423..145856;exon_number=OPG168;gbkey=misc_feature;number=OPG168 +NC_063383.1 RefSeq sequence_feature 145857 146039 . + . ID=id-NC_063383.1:145857..146039;exon_number=OPG169;gbkey=misc_feature;number=OPG169 +NC_063383.1 RefSeq gene 146113 146778 . - . ID=gene-NBT03_gp146;Dbxref=GeneID:72551562;Name=OPG170;gbkey=Gene;gene=OPG170;gene_biotype=protein_coding;locus_tag=NBT03_gp146;old_locus_tag=MPXV-M5312_HM12_Rivers-151 +NC_063383.1 RefSeq CDS 146113 146778 . - 0 ID=cds-YP_010377148.1;Parent=gene-NBT03_gp146;Dbxref=GenBank:YP_010377148.1,GeneID:72551562;Name=OPG170;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp151%3B secreted protein reducing infiltration of inflammatory cells into the infected area%3B Chemokine binding protein%3B similar to VACV-WR A41L and VACV-Cop A41L;gbkey=CDS;gene=OPG170;locus_tag=NBT03_gp146;product=Chemokine binding protein;protein_id=YP_010377148.1 +NC_063383.1 RefSeq gene 146988 147389 . + . ID=gene-NBT03_gp147;Dbxref=GeneID:72551563;Name=OPG171;gbkey=Gene;gene=OPG171;gene_biotype=protein_coding;locus_tag=NBT03_gp147;old_locus_tag=MPXV-M5312_HM12_Rivers-152 +NC_063383.1 RefSeq CDS 146988 147389 . + 0 ID=cds-YP_010377149.1;Parent=gene-NBT03_gp147;Dbxref=GenBank:YP_010377149.1,GeneID:72551563;Name=OPG171;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp152%3B Profilin-like protein%2C ATI-localized%3B similar to VACV-WR A42R and VACV-Cop A42R;gbkey=CDS;gene=OPG171;locus_tag=NBT03_gp147;product=Profilin domain protein;protein_id=YP_010377149.1 +NC_063383.1 RefSeq gene 147427 148017 . + . ID=gene-NBT03_gp148;Dbxref=GeneID:72551564;Name=OPG172;gbkey=Gene;gene=OPG172;gene_biotype=protein_coding;locus_tag=NBT03_gp148;old_locus_tag=MPXV-M5312_HM12_Rivers-153 +NC_063383.1 RefSeq CDS 147427 148017 . + 0 ID=cds-YP_010377150.1;Parent=gene-NBT03_gp148;Dbxref=GenBank:YP_010377150.1,GeneID:72551564;Name=OPG172;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp153%3B Type I membrane glycoprotein%3B similar to VACV-WR A43R and VACV-Cop A43R;gbkey=CDS;gene=OPG172;locus_tag=NBT03_gp148;product=Type-I membrane glycoprotein;protein_id=YP_010377150.1 +NC_063383.1 RefSeq gene 148037 148261 . + . ID=gene-NBT03_gp149;Dbxref=GeneID:72551565;Name=OPG173;gbkey=Gene;gene=OPG173;gene_biotype=protein_coding;locus_tag=NBT03_gp149;old_locus_tag=MPXV-M5312_HM12_Rivers-154 +NC_063383.1 RefSeq CDS 148037 148261 . + 0 ID=cds-YP_010377151.1;Parent=gene-NBT03_gp149;Dbxref=GenBank:YP_010377151.1,GeneID:72551565;Name=OPG173;Note=Old product: MPXVgp154%3B Hypothetical protein%3B similar to VACV-WR A44R and VACV-Cop A43.5R;gbkey=CDS;gene=OPG173;locus_tag=NBT03_gp149;product=MPXVgp154;protein_id=YP_010377151.1 +NC_063383.1 RefSeq gene 148355 149395 . - . ID=gene-NBT03_gp150;Dbxref=GeneID:72551566;Name=OPG174;gbkey=Gene;gene=OPG174;gene_biotype=protein_coding;locus_tag=NBT03_gp150;old_locus_tag=MPXV-M5312_HM12_Rivers-155 +NC_063383.1 RefSeq CDS 148355 149395 . - 0 ID=cds-YP_010377152.1;Parent=gene-NBT03_gp150;Dbxref=GenBank:YP_010377152.1,GeneID:72551566;Name=OPG174;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp155%3B 3-b-Hydroxy-delta5-steroid dehydrogenase%3B 3 beta-hydroxysteroid dehydrogenase/delta 5->4 isomerase%3B similar to VACV-WR A45L and VACV-Cop A44L;gbkey=CDS;gene=OPG174;locus_tag=NBT03_gp150;product=Hydroxysteroid dehydrogenase;protein_id=YP_010377152.1 +NC_063383.1 RefSeq gene 149442 149819 . + . ID=gene-NBT03_gp151;Dbxref=GeneID:72551567;Name=OPG175;gbkey=Gene;gene=OPG175;gene_biotype=protein_coding;locus_tag=NBT03_gp151;old_locus_tag=MPXV-M5312_HM12_Rivers-156 +NC_063383.1 RefSeq CDS 149442 149819 . + 0 ID=cds-YP_010377153.1;Parent=gene-NBT03_gp151;Dbxref=GenBank:YP_010377153.1,GeneID:72551567;Name=OPG175;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp156%3B virion core protein%3B Inactive Cu-Zn superoxide dismutase-like virion protein%3B similar to VACV-WR A46R and VACV-Cop A45R;gbkey=CDS;gene=OPG175;locus_tag=NBT03_gp151;product=Copper/zinc superoxide dismutase;protein_id=YP_010377153.1 +NC_063383.1 RefSeq gene 149809 150531 . + . ID=gene-NBT03_gp152;Dbxref=GeneID:72551568;Name=OPG176;gbkey=Gene;gene=OPG176;gene_biotype=protein_coding;locus_tag=NBT03_gp152;old_locus_tag=MPXV-M5312_HM12_Rivers-157 +NC_063383.1 RefSeq CDS 149809 150531 . + 0 ID=cds-YP_010377154.1;Parent=gene-NBT03_gp152;Dbxref=GenBank:YP_010377154.1,GeneID:72551568;Name=OPG176;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp157%3B IL-1/TLR signaling inhibitor%3B similar to VACV-WR A47R and VACV-Cop A46R;gbkey=CDS;gene=OPG176;locus_tag=NBT03_gp152;product=Bcl-2-like protein;protein_id=YP_010377154.1 +NC_063383.1 RefSeq sequence_feature 150684 151407 . - . ID=id-NC_063383.1:150684..151407;exon_number=OPG177;gbkey=misc_feature;number=OPG177 +NC_063383.1 RefSeq gene 151509 152123 . + . ID=gene-NBT03_gp153;Dbxref=GeneID:72551569;Name=OPG178;gbkey=Gene;gene=OPG178;gene_biotype=protein_coding;locus_tag=NBT03_gp153;old_locus_tag=MPXV-M5312_HM12_Rivers-158 +NC_063383.1 RefSeq CDS 151509 152123 . + 0 ID=cds-YP_010377155.1;Parent=gene-NBT03_gp153;Dbxref=GenBank:YP_010377155.1,GeneID:72551569;Name=OPG178;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp159%3B thymidylate kinase%3B start of ORF is missing approx. 37 AA compared to CPXVs%3B similar to VACV-WR A49R and VACV-Cop A48R;gbkey=CDS;gene=OPG178;locus_tag=NBT03_gp153;product=Thymidylate kinase;protein_id=YP_010377155.1 +NC_063383.1 RefSeq sequence_feature 152172 152660 . + . ID=id-NC_063383.1:152172..152660;exon_number=OPG179;gbkey=misc_feature;number=OPG179 +NC_063383.1 RefSeq gene 152692 154371 . + . ID=gene-NBT03_gp154;Dbxref=GeneID:72551570;Name=OPG180;gbkey=Gene;gene=OPG180;gene_biotype=protein_coding;locus_tag=NBT03_gp154;old_locus_tag=MPXV-M5312_HM12_Rivers-159 +NC_063383.1 RefSeq CDS 152692 154371 . + 0 ID=cds-YP_010377156.1;Parent=gene-NBT03_gp154;Dbxref=GenBank:YP_010377156.1,GeneID:72551570;Name=OPG180;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp160%3B ATP-dependent DNA ligase%3B similar to VACV-WR A50R and VACV-Cop A50R;gbkey=CDS;gene=OPG180;locus_tag=NBT03_gp154;product=DNA ligase (2);protein_id=YP_010377156.1 +NC_063383.1 RefSeq gene 154412 155416 . + . ID=gene-NBT03_gp155;Dbxref=GeneID:72551571;Name=OPG181;gbkey=Gene;gene=OPG181;gene_biotype=protein_coding;locus_tag=NBT03_gp155;old_locus_tag=MPXV-M5312_HM12_Rivers-160 +NC_063383.1 RefSeq CDS 154412 155416 . + 0 ID=cds-YP_010377157.1;Parent=gene-NBT03_gp155;Dbxref=GenBank:YP_010377157.1,GeneID:72551571;Name=OPG181;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp161%3B Hypothetical protein%3B similar to VACV-WR A51R and VACV-Cop A51R;gbkey=CDS;gene=OPG181;locus_tag=NBT03_gp155;product=M137R;protein_id=YP_010377157.1 +NC_063383.1 RefSeq sequence_feature 155485 156037 . + . ID=id-NC_063383.1:155485..156037;exon_number=OPG182;gbkey=misc_feature;number=OPG182 +NC_063383.1 RefSeq sequence_feature 156355 156916 . + . ID=id-NC_063383.1:156355..156916;exon_number=OPG183;gbkey=misc_feature;number=OPG183 +NC_063383.1 RefSeq sequence_feature 157176 158867 . + . ID=id-NC_063383.1:157176..158867;exon_number=OPG184;gbkey=misc_feature;number=OPG184 +NC_063383.1 RefSeq gene 158917 159858 . + . ID=gene-NBT03_gp156;Dbxref=GeneID:72551572;Name=OPG185;gbkey=Gene;gene=OPG185;gene_biotype=protein_coding;locus_tag=NBT03_gp156;old_locus_tag=MPXV-M5312_HM12_Rivers-162 +NC_063383.1 RefSeq CDS 158917 159858 . + 0 ID=cds-YP_010377158.1;Parent=gene-NBT03_gp156;Dbxref=GenBank:YP_010377158.1,GeneID:72551572;Name=OPG185;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp163%3B EEV envelope and cell membrane glycoprotein hemagglutinin%3B inhibition of the ability of infected cells to fuse%3B interacts with VAC F13L%3B similar to VACV-WR B2R and VACV-Cop A56R;gbkey=CDS;gene=OPG185;locus_tag=NBT03_gp156;product=Hemagglutinin;protein_id=YP_010377158.1 +NC_063383.1 RefSeq sequence_feature 159876 160470 . + . ID=id-NC_063383.1:159876..160470;exon_number=OPG186;gbkey=misc_feature;number=OPG186 +NC_063383.1 RefSeq gene 160622 161533 . + . ID=gene-NBT03_gp157;Dbxref=GeneID:72551573;Name=OPG187;gbkey=Gene;gene=OPG187;gene_biotype=protein_coding;locus_tag=NBT03_gp157;old_locus_tag=MPXV-M5312_HM12_Rivers-163 +NC_063383.1 RefSeq CDS 160622 161533 . + 0 ID=cds-YP_010377159.1;Parent=gene-NBT03_gp157;Dbxref=GenBank:YP_010377159.1,GeneID:72551573;Name=OPG187;Note=Taxonomic breadth: poxviridae%3B Old product: MPXVgp164%3B serine%3B Ser/Thr Kinase%3B similar to VACV-WR B3R and VACV-Cop B1R;gbkey=CDS;gene=OPG187;locus_tag=NBT03_gp157;product=Ser/thr kinase;protein_id=YP_010377159.1 +NC_063383.1 RefSeq gene 161596 163107 . + . ID=gene-NBT03_gp158;Dbxref=GeneID:72551574;Name=OPG188;gbkey=Gene;gene=OPG188;gene_biotype=protein_coding;locus_tag=NBT03_gp158;old_locus_tag=MPXV-M5312_HM12_Rivers-164 +NC_063383.1 RefSeq CDS 161596 163107 . + 0 ID=cds-YP_010377160.1;Parent=gene-NBT03_gp158;Dbxref=GenBank:YP_010377160.1,GeneID:72551574;Name=OPG188;Note=Taxonomic breadth: orthopoxvirus%3B Old product: MPXVgp165%3B schlafen-like%3B similar to VACV-WR B4R and VACV-Cop B2R;gbkey=CDS;gene=OPG188;locus_tag=NBT03_gp158;product=Schlafen (1);protein_id=YP_010377160.1 +NC_063383.1 RefSeq gene 163333 165018 . + . ID=gene-NBT03_gp159;Dbxref=GeneID:72551575;Name=OPG189;gbkey=Gene;gene=OPG189;gene_biotype=protein_coding;locus_tag=NBT03_gp159;old_locus_tag=MPXV-M5312_HM12_Rivers-165 +NC_063383.1 RefSeq CDS 163333 165018 . + 0 ID=cds-YP_010377161.1;Parent=gene-NBT03_gp159;Dbxref=GenBank:YP_010377161.1,GeneID:72551575;Name=OPG189;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp166%3B ankyrin-like%3B similar to VACV-WR B5R and VACV-Cop B4R;gbkey=CDS;gene=OPG189;locus_tag=NBT03_gp159;product=Ankyrin repeat protein (25);protein_id=YP_010377161.1 +NC_063383.1 RefSeq gene 165122 166075 . + . ID=gene-NBT03_gp160;Dbxref=GeneID:72551576;Name=OPG190;gbkey=Gene;gene=OPG190;gene_biotype=protein_coding;locus_tag=NBT03_gp160;old_locus_tag=MPXV-M5312_HM12_Rivers-166 +NC_063383.1 RefSeq CDS 165122 166075 . + 0 ID=cds-YP_010377162.1;Parent=gene-NBT03_gp160;Dbxref=GenBank:YP_010377162.1,GeneID:72551576;Name=OPG190;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp167%3B palmitated 42 kDa glycoprotein located both on the membranes of infected cells and on EEV envelope%3B complement control protein-like%3B EEV type-1 membrane glycoprotein%2C protective antigen%3B similar to VACV-WR B6R and VACV-Cop B5R;gbkey=CDS;gene=OPG190;locus_tag=NBT03_gp160;product=EEV type-I membrane glycoprotein;protein_id=YP_010377162.1 +NC_063383.1 RefSeq gene 166161 166667 . + . ID=gene-NBT03_gp161;Dbxref=GeneID:72551577;Name=OPG191;gbkey=Gene;gene=OPG191;gene_biotype=protein_coding;locus_tag=NBT03_gp161;old_locus_tag=MPXV-M5312_HM12_Rivers-167 +NC_063383.1 RefSeq CDS 166161 166667 . + 0 ID=cds-YP_010377163.1;Parent=gene-NBT03_gp161;Dbxref=GenBank:YP_010377163.1,GeneID:72551577;Name=OPG191;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp168%3B Ankyrin-like protein%3B similar to VACV-WR B7R and VACV-Cop B6R;gbkey=CDS;gene=OPG191;locus_tag=NBT03_gp161;product=Ankyrin-like protein (46);protein_id=YP_010377163.1 +NC_063383.1 RefSeq gene 166731 167279 . + . ID=gene-NBT03_gp162;Dbxref=GeneID:72551578;Name=OPG192;gbkey=Gene;gene=OPG192;gene_biotype=protein_coding;locus_tag=NBT03_gp162;old_locus_tag=MPXV-M5312_HM12_Rivers-168 +NC_063383.1 RefSeq CDS 166731 167279 . + 0 ID=cds-YP_010377164.1;Parent=gene-NBT03_gp162;Dbxref=GenBank:YP_010377164.1,GeneID:72551578;Name=OPG192;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp169%3B Virulence%2C ER resident%3B similar to VACV-WR B8R and VACV-Cop B7R;gbkey=CDS;gene=OPG192;locus_tag=NBT03_gp162;product=Virulence protein;protein_id=YP_010377164.1 +NC_063383.1 RefSeq gene 167334 168137 . + . ID=gene-NBT03_gp163;Dbxref=GeneID:72551579;Name=OPG193;gbkey=Gene;gene=OPG193;gene_biotype=protein_coding;locus_tag=NBT03_gp163;old_locus_tag=MPXV-M5312_HM12_Rivers-169 +NC_063383.1 RefSeq CDS 167334 168137 . + 0 ID=cds-YP_010377165.1;Parent=gene-NBT03_gp163;Dbxref=GenBank:YP_010377165.1,GeneID:72551579;Name=OPG193;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp170%3B secreted IFN-g binding protein%3B Soluble IFN-g receptor-like protein%3B similar to VACV-WR B9R and VACV-Cop B8R;gbkey=CDS;gene=OPG193;locus_tag=NBT03_gp163;product=Soluble interferon-gamma receptor-like protein;protein_id=YP_010377165.1 +NC_063383.1 RefSeq gene 168230 168895 . + . ID=gene-NBT03_gp164;Dbxref=GeneID:72551580;Name=OPG195;gbkey=Gene;gene=OPG195;gene_biotype=protein_coding;locus_tag=NBT03_gp164;old_locus_tag=MPXV-M5312_HM12_Rivers-170 +NC_063383.1 RefSeq CDS 168230 168895 . + 0 ID=cds-YP_010377166.1;Parent=gene-NBT03_gp164;Dbxref=GenBank:YP_010377166.1,GeneID:72551580;Name=OPG195;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp171%3B shope fibroma virus T4 protein-like%3B ER-localized apoptosis regulator%3B similar to VACV-WR B10R and VACV-Cop B9R;gbkey=CDS;gene=OPG195;locus_tag=NBT03_gp164;product=Intracellular viral protein;protein_id=YP_010377166.1 +NC_063383.1 RefSeq sequence_feature 169001 169642 . + . ID=id-NC_063383.1:169001..169642;exon_number=OPG196;gbkey=misc_feature;number=OPG196 +NC_063383.1 RefSeq gene 169670 169972 . + . ID=gene-NBT03_gp165;Dbxref=GeneID:72551581;Name=OPG197;gbkey=Gene;gene=OPG197;gene_biotype=protein_coding;locus_tag=NBT03_gp165;old_locus_tag=MPXV-M5312_HM12_Rivers-171 +NC_063383.1 RefSeq CDS 169670 169972 . + 0 ID=cds-YP_010377167.1;Parent=gene-NBT03_gp165;Dbxref=GenBank:YP_010377167.1,GeneID:72551581;Name=OPG197;Note=Taxonomic breadth: chordopoxvirinae%3B Hypothetical protein%3B similar to VACV-Cop-B11R;gbkey=CDS;gene=OPG197;locus_tag=NBT03_gp165;product=CPXV205 protein;protein_id=YP_010377167.1 +NC_063383.1 RefSeq gene 170038 170886 . + . ID=gene-NBT03_gp166;Dbxref=GeneID:72551582;Name=OPG198;gbkey=Gene;gene=OPG198;gene_biotype=protein_coding;locus_tag=NBT03_gp166;old_locus_tag=MPXV-M5312_HM12_Rivers-172 +NC_063383.1 RefSeq CDS 170038 170886 . + 0 ID=cds-YP_010377168.1;Parent=gene-NBT03_gp166;Dbxref=GenBank:YP_010377168.1,GeneID:72551582;Name=OPG198;Note=Taxonomic breadth: poxviridae%3B protein kinase-like%3B similar to VACV-WR B11R and VACV-Cop B12R;gbkey=CDS;gene=OPG198;locus_tag=NBT03_gp166;product=Ser/thr kinase;protein_id=YP_010377168.1 +NC_063383.1 RefSeq gene 170988 172022 . + . ID=gene-NBT03_gp167;Dbxref=GeneID:72551583;Name=OPG199;gbkey=Gene;gene=OPG199;gene_biotype=protein_coding;locus_tag=NBT03_gp167;old_locus_tag=MPXV-M5312_HM12_Rivers-173 +NC_063383.1 RefSeq CDS 170988 172022 . + 0 ID=cds-YP_010377169.1;Parent=gene-NBT03_gp167;Dbxref=GenBank:YP_010377169.1,GeneID:72551583;Name=OPG199;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp173%3B serine protease inhibitor-like%2C SPI-2%3B inhibition of the IL-1b converting enzyme%3B apoptosis inhibition%3B Serpin 1%2C2%2C3%3B similar to VACV-WR B12R and VACV-Cop K2L;gbkey=CDS;gene=OPG199;locus_tag=NBT03_gp167;product=Serpin;protein_id=YP_010377169.1 +NC_063383.1 RefSeq gene 172150 172599 . + . ID=gene-NBT03_gp168;Dbxref=GeneID:72551584;Name=OPG200;gbkey=Gene;gene=OPG200;gene_biotype=protein_coding;locus_tag=NBT03_gp168;old_locus_tag=MPXV-M5312_HM12_Rivers-174 +NC_063383.1 RefSeq CDS 172150 172599 . + 0 ID=cds-YP_010377170.1;Parent=gene-NBT03_gp168;Dbxref=GenBank:YP_010377170.1,GeneID:72551584;Name=OPG200;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp174%3B Hypothetical protein%3B Putative tlr signaling inhibitor%3B similar to VACV-WR B13R and VACV-Cop C16L and B15R;gbkey=CDS;gene=OPG200;locus_tag=NBT03_gp168;product=Bcl-2-like protein;protein_id=YP_010377170.1 +NC_063383.1 RefSeq sequence_feature 172685 173697 . + . ID=id-NC_063383.1:172685..173697;exon_number=OPG201;gbkey=misc_feature;number=OPG201 +NC_063383.1 RefSeq sequence_feature 173744 174187 . - . ID=id-NC_063383.1:173744..174187;exon_number=OPG202;gbkey=misc_feature;number=OPG202 +NC_063383.1 RefSeq sequence_feature 174328 174456 . + . ID=id-NC_063383.1:174328..174456;exon_number=OPG203;gbkey=misc_feature;number=OPG203 +NC_063383.1 RefSeq gene 174532 175587 . + . ID=gene-NBT03_gp169;Dbxref=GeneID:72551585;Name=OPG204;gbkey=Gene;gene=OPG204;gene_biotype=protein_coding;locus_tag=NBT03_gp169;old_locus_tag=MPXV-M5312_HM12_Rivers-177 +NC_063383.1 RefSeq CDS 174532 175587 . + 0 ID=cds-YP_010377172.1;Parent=gene-NBT03_gp169;Dbxref=GenBank:YP_010377172.1,GeneID:72551585;Name=OPG204;Note=Taxonomic breadth: orthopoxvirus%3B Old product: MPXVgp177%3B cell surface antigen and secreted IFN-a%3B IFN-alpha/beta receptor glycoprotein%3B similar to VACV-WR B16R and VACV-Cop B19R;gbkey=CDS;gene=OPG204;locus_tag=NBT03_gp169;product=IFN-alpha/beta-receptor-like secreted glycoprotein;protein_id=YP_010377172.1 +NC_063383.1 RefSeq gene 175656 178019 . + . ID=gene-NBT03_gp170;Dbxref=GeneID:72551586;Name=OPG205;gbkey=Gene;gene=OPG205;gene_biotype=protein_coding;locus_tag=NBT03_gp170;old_locus_tag=MPXV-M5312_HM12_Rivers-178 +NC_063383.1 RefSeq CDS 175656 178019 . + 0 ID=cds-YP_010377173.1;Parent=gene-NBT03_gp170;Dbxref=GenBank:YP_010377173.1,GeneID:72551586;Name=OPG205;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp178%3B ankyrin-like%3B similar to VACV-WR B17R and VACV-Cop B20R;gbkey=CDS;gene=OPG205;locus_tag=NBT03_gp170;product=Ankyrin repeat protein (44);protein_id=YP_010377173.1 +NC_063383.1 RefSeq sequence_feature 178118 178916 . + . ID=id-NC_063383.1:178118..178916;exon_number=OPG206;gbkey=misc_feature;number=OPG206 +NC_063383.1 RefSeq gene 179266 180339 . + . ID=gene-NBT03_gp171;Dbxref=GeneID:72551587;Name=OPG208;gbkey=Gene;gene=OPG208;gene_biotype=protein_coding;locus_tag=NBT03_gp171;old_locus_tag=MPXV-M5312_HM12_Rivers-180 +NC_063383.1 RefSeq CDS 179266 180339 . + 0 ID=cds-YP_010377174.1;Parent=gene-NBT03_gp171;Dbxref=GenBank:YP_010377174.1,GeneID:72551587;Name=OPG208;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp180%3B serine protease inhibitor-like%2C SPI-1%3B apoptosis inhibition%3B Serpin 1%2C2%2C3%3B Actual start may be at position 179%2C074%3B annotated start of ORF is missing approx. 17 AA compared to CPXVs%3B similar to VACV-WR B19R and VACV-Cop K2L;gbkey=CDS;gene=OPG208;locus_tag=NBT03_gp171;product=Serpin;protein_id=YP_010377174.1 +NC_063383.1 RefSeq gene 180518 181090 . + . ID=gene-NBT03_gp172;Dbxref=GeneID:72551588;Name=OPG209;gbkey=Gene;gene=OPG209;gene_biotype=protein_coding;locus_tag=NBT03_gp172;old_locus_tag=MPXV-M5312_HM12_Rivers-181 +NC_063383.1 RefSeq CDS 180518 181090 . + 0 ID=cds-YP_010377175.1;Parent=gene-NBT03_gp172;Dbxref=GenBank:YP_010377175.1,GeneID:72551588;Name=OPG209;Note=Old product: MPXVgp181%3B Hypothetical protein%3B similar to VACV-WR B20R and VACV-Cop C14L;gbkey=CDS;gene=OPG209;locus_tag=NBT03_gp172;product=Virulence protein;protein_id=YP_010377175.1 +NC_063383.1 RefSeq gene 181356 186998 . + . ID=gene-NBT03_gp173;Dbxref=GeneID:72551589;Name=OPG210;gbkey=Gene;gene=OPG210;gene_biotype=protein_coding;locus_tag=NBT03_gp173;old_locus_tag=MPXV-M5312_HM12_Rivers-182 +NC_063383.1 RefSeq CDS 181356 186998 . + 0 ID=cds-YP_010377176.1;Parent=gene-NBT03_gp173;Dbxref=GenBank:YP_010377176.1,GeneID:72551589;Name=OPG210;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp182%3B Surface glycoprotein%3B putative membrane-associated glycoprotein%3B cadherin-like domain%3B similar to VACV-WR B21R;gbkey=CDS;gene=OPG210;locus_tag=NBT03_gp173;product=B22R family protein;protein_id=YP_010377176.1 +NC_063383.1 RefSeq sequence_feature 187317 187743 . + . ID=id-NC_063383.1:187317..187743;exon_number=OPG212;gbkey=misc_feature;number=OPG212 +NC_063383.1 RefSeq sequence_feature 187822 188298 . + . ID=id-NC_063383.1:187822..188298;exon_number=OPG213;gbkey=misc_feature;number=OPG213 +NC_063383.1 RefSeq sequence_feature 188458 188963 . + . ID=id-NC_063383.1:188458..188963;exon_number=OPG214;gbkey=misc_feature;number=OPG214 +NC_063383.1 RefSeq gene 189199 189660 . + . ID=gene-NBT03_gp174;Dbxref=GeneID:72551590;Name=OPG005;gbkey=Gene;gene=OPG005;gene_biotype=protein_coding;locus_tag=NBT03_gp174;old_locus_tag=MPXV-M5312_HM12_Rivers-184 +NC_063383.1 RefSeq CDS 189199 189660 . + 0 ID=cds-YP_010377177.1;Parent=gene-NBT03_gp174;Dbxref=GenBank:YP_010377177.1,GeneID:72551590;Name=OPG005;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp185%3B VAC B15R-like%3B Hypothetical protein%3B Putative tlr signaling inhibitor%3B similar to VACV-WR N1R and VACV-Cop C16L and B22R;gbkey=CDS;gene=OPG005;locus_tag=NBT03_gp174;product=Bcl-2-like protein;protein_id=YP_010377177.1 +NC_063383.1 RefSeq gene 190410 190940 . + . ID=gene-NBT03_gp175;Dbxref=GeneID:72551591;Name=OPG016;gbkey=Gene;gene=OPG016;gene_biotype=protein_coding;locus_tag=NBT03_gp175;old_locus_tag=MPXV-M5312_HM12_Rivers-186 +NC_063383.1 RefSeq CDS 190410 190940 . + 0 ID=cds-YP_010377184.1;Parent=gene-NBT03_gp175;Dbxref=GenBank:YP_010377184.1,GeneID:72551591;Name=OPG016;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp187%3B similar to VACV-WR N3R;gbkey=CDS;gene=OPG016;locus_tag=NBT03_gp175;product=Brix domain protein;protein_id=YP_010377184.1 +NC_063383.1 RefSeq long_terminal_repeat 190788 197209 . + . ID=id-NC_063383.1:190788..197209;gbkey=repeat_region;rpt_type=long_terminal_repeat +NC_063383.1 RefSeq gene 191054 192367 . + . ID=gene-NBT03_gp176;Dbxref=GeneID:72551592;Name=OPG015_dup;gbkey=Gene;gene=OPG015_dup;gene_biotype=protein_coding;locus_tag=NBT03_gp176;old_locus_tag=MPXV-M5312_HM12_Rivers-187 +NC_063383.1 RefSeq CDS 191054 192367 . + 0 ID=cds-YP_010377179.1;Parent=gene-NBT03_gp176;Dbxref=GenBank:YP_010377179.1,GeneID:72551592;Name=OPG015_dup;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp188%3B ankyrin-like%3B Ankyrin (CPXV-017)%3B similar to VACV-WR N4R;gbkey=CDS;gene=OPG015_dup;locus_tag=NBT03_gp176;product=Ankyrin repeat protein (39);protein_id=YP_010377179.1 +NC_063383.1 RefSeq gene 192603 194369 . + . ID=gene-NBT03_gp177;Dbxref=GeneID:72551593;Name=OPG003_dup;gbkey=Gene;gene=OPG003_dup;gene_biotype=protein_coding;locus_tag=NBT03_gp177;old_locus_tag=MPXV-M5312_HM12_Rivers-188 +NC_063383.1 RefSeq CDS 192603 194369 . + 0 ID=cds-YP_010377180.1;Parent=gene-NBT03_gp177;Dbxref=GenBank:YP_010377180.1,GeneID:72551593;Name=OPG003_dup;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp189%3B ankyrin-like%3B similar to VACV-WR J1R and VACV-Cop C19L;gbkey=CDS;gene=OPG003_dup;locus_tag=NBT03_gp177;product=Ankyrin repeat protein (25);protein_id=YP_010377180.1 +NC_063383.1 RefSeq gene 194459 195508 . + . ID=gene-NBT03_gp178;Dbxref=GeneID:72551594;Name=OPG002_dup;gbkey=Gene;gene=OPG002_dup;gene_biotype=protein_coding;locus_tag=NBT03_gp178;old_locus_tag=MPXV-M5312_HM12_Rivers-189 +NC_063383.1 RefSeq CDS 194459 195508 . + 0 ID=cds-YP_010377181.1;Parent=gene-NBT03_gp178;Dbxref=GenBank:YP_010377181.1,GeneID:72551594;Name=OPG002_dup;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp190%3B secreted TNF binding protein%3B TNF receptor (CrmB)%3B similar to VACV-WR J2R and VACV-Cop C22L;gbkey=CDS;gene=OPG002_dup;locus_tag=NBT03_gp178;product=Crm-B secreted TNF-alpha-receptor-like protein;protein_id=YP_010377181.1 +NC_063383.1 RefSeq gene 195635 196375 . + . ID=gene-NBT03_gp179;Dbxref=GeneID:72551595;Name=OPG001_dup;gbkey=Gene;gene=OPG001_dup;gene_biotype=protein_coding;locus_tag=NBT03_gp179;old_locus_tag=MPXV-M5312_HM12_Rivers-190 +NC_063383.1 RefSeq CDS 195635 196375 . + 0 ID=cds-YP_010377182.1;Parent=gene-NBT03_gp179;Dbxref=GenBank:YP_010377182.1,GeneID:72551595;Name=OPG001_dup;Note=Taxonomic breadth: chordopoxvirinae%3B Old product: MPXVgp191%3B Chemokine binding protein (Cop-C23L)%3B most abundant secreted protein%3B CC-chemokine binding protein%3B similar to VACV-WR J3R and VACV-Cop C23L and B29R;gbkey=CDS;gene=OPG001_dup;locus_tag=NBT03_gp179;product=Chemokine binding protein;protein_id=YP_010377182.1 diff --git a/phylogenetic/defaults/hmpxv1/config.yaml b/phylogenetic/defaults/hmpxv1/config.yaml index 0f61fcc..658b924 100644 --- a/phylogenetic/defaults/hmpxv1/config.yaml +++ b/phylogenetic/defaults/hmpxv1/config.yaml @@ -1,5 +1,5 @@ reference: "defaults/reference.fasta" -genemap: "defaults/genemap.gff" +genome_annotation: "defaults/genome_annotation.gff3" genbank_reference: "defaults/reference.gb" include: "defaults/hmpxv1/include.txt" clades: "defaults/clades.tsv" diff --git a/phylogenetic/defaults/hmpxv1_big/config.yaml b/phylogenetic/defaults/hmpxv1_big/config.yaml index b62602c..e2b63d9 100644 --- a/phylogenetic/defaults/hmpxv1_big/config.yaml +++ b/phylogenetic/defaults/hmpxv1_big/config.yaml @@ -1,5 +1,5 @@ reference: "defaults/reference.fasta" -genemap: "defaults/genemap.gff" +genome_annotation: "defaults/genome_annotation.gff3" genbank_reference: "defaults/reference.gb" include: "defaults/hmpxv1_big/include.txt" clades: "defaults/clades.tsv" diff --git a/phylogenetic/defaults/mpxv/config.yaml b/phylogenetic/defaults/mpxv/config.yaml index 182d972..8d2e39f 100644 --- a/phylogenetic/defaults/mpxv/config.yaml +++ b/phylogenetic/defaults/mpxv/config.yaml @@ -1,7 +1,7 @@ auspice_config: "defaults/mpxv/auspice_config.json" include: "defaults/mpxv/include.txt" reference: "defaults/reference.fasta" -genemap: "defaults/genemap.gff" +genome_annotation: "defaults/genome_annotation.gff3" genbank_reference: "defaults/reference.gb" lat_longs: "defaults/lat_longs.tsv" description: "defaults/description.md" diff --git a/phylogenetic/rules/annotate_phylogeny.smk b/phylogenetic/rules/annotate_phylogeny.smk index 9f45b29..248ea10 100644 --- a/phylogenetic/rules/annotate_phylogeny.smk +++ b/phylogenetic/rules/annotate_phylogeny.smk @@ -48,7 +48,7 @@ rule translate: input: tree=build_dir + "/{build_name}/tree.nwk", node_data=build_dir + "/{build_name}/nt_muts.json", - genemap=config["genemap"], + genome_annotation=config["genome_annotation"], output: node_data=build_dir + "/{build_name}/aa_muts.json", shell: @@ -56,7 +56,7 @@ rule translate: augur translate \ --tree {input.tree} \ --ancestral-sequences {input.node_data} \ - --reference-sequence {input.genemap} \ + --reference-sequence {input.genome_annotation} \ --output {output.node_data} """ diff --git a/phylogenetic/rules/prepare_sequences.smk b/phylogenetic/rules/prepare_sequences.smk index 42a1c39..c9ab501 100644 --- a/phylogenetic/rules/prepare_sequences.smk +++ b/phylogenetic/rules/prepare_sequences.smk @@ -5,7 +5,7 @@ REQUIRED INPUTS: include = path to file of sequences to in force include reference = path to reference sequence FASTA for Nextclade alignment - genemap = path to genemap GFF for Nextclade alignment + genome_annotation = path to genome_annotation GFF for Nextclade alignment maskfile = path to maskfile of sites to be masked OUTPUTS: @@ -158,30 +158,35 @@ rule reverse_reverse_complements: rule align: """ Aligning sequences to {input.reference} - - filling gaps with N """ input: sequences=build_dir + "/{build_name}/reversed.fasta", reference=config["reference"], - genemap=config["genemap"], + genome_annotation=config["genome_annotation"], output: alignment=build_dir + "/{build_name}/aligned.fasta", - insertions=build_dir + "/{build_name}/insertions.fasta", params: - max_indel=config["max_indel"], - seed_spacing=config["seed_spacing"], + # Alignment params from all-clades nextclade dataset + excess_bandwidth=100, + terminal_bandwidth=300, + window_size=40, + min_seed_cover=0.1, + allowed_mismatches=8, + gap_alignment_side="left", threads: workflow.cores shell: """ - nextalign run \ + nextclade3 run \ --jobs {threads} \ - --reference {input.reference} \ - --genemap {input.genemap} \ - --max-indel {params.max_indel} \ - --seed-spacing {params.seed_spacing} \ - --retry-reverse-complement \ + --input-ref {input.reference} \ + --input-annotation {input.genome_annotation} \ + --excess-bandwidth {params.excess_bandwidth} \ + --terminal-bandwidth {params.terminal_bandwidth} \ + --window-size {params.window_size} \ + --min-seed-cover {params.min_seed_cover} \ + --allowed-mismatches {params.allowed_mismatches} \ + --gap-alignment-side {params.gap_alignment_side} \ --output-fasta - \ - --output-insertions {output.insertions} \ {input.sequences} | seqkit seq -i > {output.alignment} """