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Send Slack notifications for clades without definition #74

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joverlee521 opened this issue Nov 28, 2023 · 0 comments
Open

Send Slack notifications for clades without definition #74

joverlee521 opened this issue Nov 28, 2023 · 0 comments
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enhancement New feature or request

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@joverlee521
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Context

As noted in #73, it may be helpful to have internal notifications of clades that lack clade definitions in our configs. This can serve as a reminder to us to add these clade definitions.

Possible solution

We previously had Slack notifications for clade-without-variant that has since been removed from the pipeline.

Our prepare-data script had an --output-clade-without-variant option that would emit a list of clades to a file. Then we had a Snakemake rule that calls on a custom notify script that will only send the Slack notification if the file was not empty.

@joverlee521 joverlee521 added the enhancement New feature or request label Nov 28, 2023
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