Auspice 2.36.0

Functional improvements

• Dynamically update regression lines to reflect filtered data.
  See PR 1484 for more.
• Scatterplot axes can now use "node-order" which is the order nodes appear on the rectangular tree.
  See PR 1494 for more.
• Show an "experimental" icon and on-hover info text for the explode-tree functionality.
  See PR 1486 for more.
• You can now use the escape key to remove a tip/branch info modal over the tree.
  See PR 1485 for more.

Bugfixes

• Drag-n-drop metadata now works for the second tree.
  See PR 1489 for more.
• Available filters are now correct when switching from a narrative to exploding the data.
  See PR 1493 for more.
• The auspice server only accepts valid sidecar file types.
  See PR 1495 for more.

Auspice 2.35.0

Upgrade how we render dropdown menus, which greatly improves the display of long options (e.g. submitting labs).
See PR 1482 for more.

Auspice 2.34.1

• (Minor change) expose functions for use in auspice.us. See PR 1478 for more.

Auspice 2.34.0

Major changes

• Measurements panel intended for displaying titer or DMS data where a tip in the tree has multiple values associated with it.
  This function requires a dataset with a _measurements.json sidecar file
  See PR 1452 for more.

Minor changes

• Improved YAML parsing for narratives
  See PR 1472 for more.
• Remove unused properties from tip-frequencies panel.
  See PR 1471 for more.
• Fixed a bug where shift+clicking on branches for trees without mutations defined caused a crash.
  See PR 1475 for more.

Auspice 2.33.0

• (Experimental) Explode phylogeny into subtrees and allow multiple trees to be provided in the dataset.
  See PR 1442 for more.
• Categorise mutations to better understand sequence changes on branches and tips.
  See PR 1449 for more.
• Add a datepicker to allow precise changes to the selected date range.
  See PR 1412 for more.
• Allow build-time customizable fine print.
  See PR 1448 for more.
• Remove scrollbar in panels when no scrolling is possible
  See PR 1439 for more.
• Allow searching in the color-by dropdown.
  See PR 1456 for more.

Auspice 2.32.1

Small bugfix to fix URL parsing to allow the string "narratives" to be in a dataset without it being interpreted as a narrative itself.
See PR 1428 for more.

Auspice 2.32.0

• Tree info boxes are now improved, and you can shift+click on a branch to see more information about that branch.
  See PR 1420 for more.
• Filters in footer are now expandable to improve usability and discoverability of the true footer.
  See PR 1414 for more.
• Fixed a bug with CSV (drag & drop) parsing. See PR 1401 for more.
• Removed unnecessary postinstall step. See PR 1419 for more.
• Improved image sizing in narratives. See PR 1408 for more.
• Improved documentation around how to build auspice documentation!

Full Changelog

Installation docs

Note: GitHub releases have not been actively maintained since 2.0.0 - we will endeavour to create releases for each published auspice version starting from now. Auspice is published using npm and so assets will not be provided with each (GitHub) release.

version 2 release

Please see https://nextstrain.github.io/auspice/releases/v2 for the auspice v2 release notes

v1.30.0

• Auspice is now globally installable and published as a npm package npmjs.com/package/auspice
• AA entropy calculation bug fixed - PR 657
• Narrative scroll bars are fixed for Linux & Windows browsers - PR 653
• Tree legend placement improved - PR 650
• npm run start is no longer deprecated

v1.29.0

• The visibility of nodes on the tree now more accurately reflects the selected date range - PR 644
• Info text is easier to read & the date range reflects the genomes in view - PR 639

Narrative improvements

• Toggle between narrative & interactive mode is much clearer - PR 648
• URL queries with no clade set zoom to the entire tree - PR 644