diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml index 756c611..fb5702d 100644 --- a/.github/workflows/rworkflows.yml +++ b/.github/workflows/rworkflows.yml @@ -4,14 +4,17 @@ name: rworkflows branches: - master - main + - devel - RELEASE_** pull_request: branches: - master - main + - devel - RELEASE_** jobs: rworkflows: + permissions: write-all runs-on: ${{ matrix.config.os }} name: ${{ matrix.config.os }} (${{ matrix.config.r }}) container: ${{ matrix.config.cont }} @@ -22,8 +25,8 @@ jobs: - os: ubuntu-latest bioc: devel r: auto - cont: bioconductor/bioconductor_docker:devel - rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release + cont: ghcr.io/bioconductor/bioconductor_docker:devel + rspm: https://packagemanager.rstudio.com/cran/__linux__/latest/release - os: macOS-latest bioc: release r: auto @@ -46,10 +49,9 @@ jobs: run_pkgdown: ${{ true }} has_runit: ${{ false }} has_latex: ${{ false }} - GITHUB_TOKEN: ${{ secrets.PAT_GITHUB }} + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} run_docker: ${{ true }} - docker_user: bschilder - docker_org: neurogenomicslab DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }} runner_os: ${{ runner.os }} cache_version: cache-v1 + docker_registry: ghcr.io