gpu_parallel.pbs

#PBS -l walltime=72:00:00
#PBS -l select=1:ncpus=4:mem=24gb:ngpus=1:gpu_type=RTX6000
#PBS -J 1-3
module load anaconda3/personal
source activate EnformerCelltyping
cd $PBS_O_WORKDIR

#read line from txt file
run=$(head -$PBS_ARRAY_INDEX pbs/parallel.txt | tail -1)
#split line into two variables by '-'
IFS=- read var1_i var2_i <<< $run

#echo them just so you can see the values in the output
echo $var1_i
echo $var2_i

#pass the variables as input to a python script
python ./bin/gpu_script.py -i "$var1_i" -j "$var2_i"