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I am using pyDockRMSD to compute RMSD for DeepAb folding predictions against known pdbs. I clean the models and do pdb->pdbqt -> mol2 conversions, however, I constantly get segmentation faults.
I attach the models example inputs_and_conversions.zip
s
The text was updated successfully, but these errors were encountered:
The problem seems to came from memory allocation.
I used alloca to be able to alocate memory on the stack as the original c code.
The advantage is the memory is freed when the call stack is unqueue.
But alocate memory on the stack are very limited in size, that why normaly people used malloc but we need to released the memory by hand.
So i will change all allocations from the stack to the heap.
But i need to identify where i need to free.
If we don't free segmentation faults will still happening
I am using pyDockRMSD to compute RMSD for DeepAb folding predictions against known pdbs. I clean the models and do pdb->pdbqt -> mol2 conversions, however, I constantly get segmentation faults.
I attach the models example
inputs_and_conversions.zip
s
The text was updated successfully, but these errors were encountered: