0.4.1

• Created three options for data processing in PANDA.

  • Union: adds rows for genes/TFs that are missing in at least one prior (expression, ppi, motif)
  • Intersection: removes TF/genes that missing in at least one prior
  • Legacy: previous data processing behavior

• The default was set to union in netZooM, netZooR, netZooPy as it is the default in netZooC.

SPIDER

SPIDER was added to netZooM:

• unit test was added

PUMA

PUMA was added to netZooM.

LIONESS

In this release, we added Lioness.
The (micro)-versioning system considers an increment of 0.1 for each new animal added in the package.

original import

This is the original code as imported from the Quackenbush lab repo.
PANDA has been added.