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You must install the 'gcc-java' package in order to provide the "jni.h" gcc header file for the java API to compile correctly. To install on linux run 'yum install gcc-java' or 'apt-get install gcc-java'. Use the configure option "--disable-java" in order to bypass java support.
SWIG is optional. Pre-built source code has been generated as part of the distritution. To install on linux run 'yum install swig' or 'apt-get install swig'.
The "help2man", "html2text", and "doxygen" packages are required to be installed for complete documentation.