diff --git a/README.Rmd b/README.Rmd index 405256916..26e2fa4e4 100644 --- a/README.Rmd +++ b/README.Rmd @@ -110,7 +110,7 @@ citation("aqp") * [Visualization of Horizon Boundaries](https://ncss-tech.github.io/AQP/aqp/hz-boundaries.html) * [Mixing Munsell Colors in {aqp}](https://ncss-tech.github.io/AQP/aqp/mix-colors.html) * [Theoretical Water Retention Curves](https://ncss-tech.github.io/AQP/aqp/water-retention-curves.html) - * [Soil Texture Vizualization Ideas](https://ncss-tech.github.io/AQP/aqp/soiltexture-vizualization-ideas.html) + * [Soil Texture Visualization Ideas](https://ncss-tech.github.io/AQP/aqp/soiltexture-vizualization-ideas.html) ## Related Presentations / Posters * [Numerical Classification of Soil Profiles (2023 NCSS Meetings)](https://ncss-tech.github.io/AQP/presentations/2023-NCSS-NCSP-poster.pdf) diff --git a/README.md b/README.md index 8b2f1a6d7..8a2e2b371 100644 --- a/README.md +++ b/README.md @@ -145,7 +145,7 @@ citation("aqp") {aqp}](https://ncss-tech.github.io/AQP/aqp/mix-colors.html) - [Theoretical Water Retention Curves](https://ncss-tech.github.io/AQP/aqp/water-retention-curves.html) -- [Soil Texture Vizualization +- [Soil Texture Visualization Ideas](https://ncss-tech.github.io/AQP/aqp/soiltexture-vizualization-ideas.html) ## Related Presentations / Posters diff --git a/inst/WORDLIST b/inst/WORDLIST index 18ddd5685..220de6de6 100644 --- a/inst/WORDLIST +++ b/inst/WORDLIST @@ -1,19 +1,26 @@ +AASHTO AGB AWC Abrol Adatte Aitchison +Alo Amundson Andesitic Andisol Andisols Ap +ApAp +Appling Argillic Barcel'o Bas +Benham Berendea +BhsBhs Biometrika Boettinger +Bonneau Bottrell Bourgault Brauer @@ -23,8 +30,10 @@ Bt Buntley Burrough Busacca +Bw CARRE CBV +CCCCC CEC CIE CIEDE @@ -33,16 +42,19 @@ CIES CMD CRS CSIRO +CaO Cambic Cardot Carre Cenac Centore Centroid +Cham Chernozem Chroma Claassen Climosequence +ColorCalcHelp ColorMunki Colorimetry Colour @@ -55,11 +67,18 @@ Dahlgren Dalal Denormalization Desc +Dithionite +Ditzler EDTA +EPSG Edul Egozcue +Extractable FAO +Feo +Fet François +GHL GRV GSM Gaans @@ -67,6 +86,9 @@ Gaurav Genuchten Geochemical Geoderma +Geomorphic +Geomorphology +Geoscience Geosciences Girard Github @@ -78,12 +100,15 @@ Gower's Grunwald HD HSD +Hartemink +Hedley Heuvelink Hilger Hmisc Honcut Hootsmans Hydric +Hydrologic ISPRS ISSN Illuminants @@ -91,10 +116,12 @@ Inkscape Jetse Jos KCl +KSSL Kearney Kempen Kollmorgen Kubelka +LAI LPP Lahar Laslett @@ -103,16 +130,20 @@ Lowndes MDS MLRA Manganiferous +Margenot Massoud Matsuyama McBratney McGahan Melanization +MgO Milliq +Minasny Modelling Mollic Mollisols Morphologic +Morphometrics Multinominal Munk Munsell @@ -123,6 +154,9 @@ NRCS NSE NSSH NSSL +NaCO +NaHCO +NaOH Naesset Nemecek Nicolae @@ -132,6 +166,7 @@ OAc OC OSACA OSD +Oxalate PGR PROJ PSC @@ -147,12 +182,12 @@ PedonPC Perrone Photogrammetric Photogrammetry -Probabalistic RStudio Rabenhorst Rebecca Redoximorphic Reflectance +Rescale Ringrose Roecker Romain @@ -171,6 +206,8 @@ Saginor Salley Sata Schaap +Scheffe +Schoeneberger Schriften Schwertmann Scopus @@ -178,6 +215,7 @@ Searle Serpentinite Serpentinitic Sharma +SiO Skovlin SoilProfileCollection SoilProfileCollection's @@ -188,15 +226,18 @@ Southard SpatialPoints SpatialPointsDataFrame SpectralReflectancesOf +Springer Stiftung Stoorvogel Sudduth +TP +Templating Thierry USGS -UWY Umbric Uwe VEOIIS +VNIR VOFEIT VWC Verosub @@ -208,6 +249,7 @@ WMF Wegener Wencheng Westin +Wysocki XRD XYZ Yadav @@ -223,44 +265,40 @@ amonium andesitic andisols anisotropy -antigorite arenic argillic -arttext attr au beflow biogeochemistry -br +biome +borate +brucelindbloom bugfix +bzip cageo cambic casoilresource catenary centroids cfr -chamosite channer channers chroma chromas chronosequence -cid cie ciede -clinochlore +cis cmol coeficient -coercible colorContrast colorContrastPlot colorconverter colorimetric -colorscience colorspace colour compositional -containingMunsell contrastClass cpm csiro @@ -283,19 +321,19 @@ der desgn deutan df +dirichlet dithionite doMC doSMP doi -dop dplyr duripans +dx ece edu elevational eluvial eluviation -env epipedon estimateSoilDepth et @@ -304,19 +342,20 @@ factor’ fao farver featkind +fetchOSD foreach fragipans fragvoltot frameify genhz geoderma +geomorphic getArgillicBounds getSoilDepthClass github glom glomalin glycoprotein -goethite gower gradational greate @@ -333,6 +372,7 @@ horizonation http https huePosition +hydr hydric hz hzTransitionProbabilities @@ -353,7 +393,7 @@ ing init initSoilProfileList internationalnetworkblacksoils -io +iteratively izing kPa knitr @@ -365,13 +405,14 @@ lieutex lim lithic lithologic +lithology llply loams lpp magrittr manganiferous matchable -mber +mcsl mds melanization missingDataGrid @@ -381,8 +422,8 @@ modelling mol mollic mollisols -montmorillonite morphologic +morphometrics mpspline multinominal munsell @@ -394,12 +435,11 @@ natively ncss nd nm -nontronite nopf noteCRNA -nrcs nrow oc +osd overlapOrGap oxalate pam @@ -415,33 +455,28 @@ pedogenic pedology pedometric pedon +pedonID pedonPC pedonid pedons pedotransfer php phylo -pid pii plotSCP plotSPC plyr -pnas -pos powdR pre prepanel priori profileApply -profileID protan qm quantized -rc rebuildSPC redoximorphic reflectance -renotation repaced rescale rescaled @@ -460,7 +495,6 @@ rv sRGB sameDepth saprolite -scielo sciencedirect sd seg @@ -474,7 +508,6 @@ soilDB soilProfileCollection soilReports sp -spc spectrophotometer splitProfiles ssc @@ -491,17 +524,16 @@ texcl texmod th tritan -twotheta ubound ucdavis un -uncoated -usda +unitless validSpatialData vectorized +wayback wikipedia -wps wtd wts www xls +xz diff --git a/vignettes/aqp-overview.Rmd b/vignettes/aqp-overview.Rmd index c10753ea6..f275bf303 100644 --- a/vignettes/aqp-overview.Rmd +++ b/vignettes/aqp-overview.Rmd @@ -36,7 +36,7 @@ Soil morphology, observed properties, and geomorphic context represent a complex * [Assigning Generalized Horizon Labels](https://ncss-tech.github.io/AQP/aqp/gen-hz-assignment.html) * [Dealing With Troublesome Data](https://ncss-tech.github.io/AQP/aqp/dealing-with-bad-data.html) * [Simulation of Soil Morphology by Perturbation](https://ncss-tech.github.io/AQP/aqp/perturb.html) - * [Soil Texture Vizualization Ideas](https://ncss-tech.github.io/AQP/aqp/soiltexture-vizualization-ideas.html) + * [Soil Texture Visualization Ideas](https://ncss-tech.github.io/AQP/aqp/soiltexture-vizualization-ideas.html) * [SPC Sketch Tips](https://ncss-tech.github.io/AQP/aqp/SPC-plotting-ideas.html) * [Vertical vs. Perpendicular Horizon Depths](https://ncss-tech.github.io/AQP/aqp/vertical_vs_perpendicular.html) @@ -285,7 +285,7 @@ Soil morphology, observed properties, and geomorphic context represent a complex ### Overlapping Annotation * `findOverlap()`: identify overlap within a vector of positions based on a given threshold - * `overlapMetrics()`: metrics of overlap within a vecgtor or positions based on a given threshold + * `overlapMetrics()`: metrics of overlap within a vector or positions based on a given threshold * `fixOverlap()`: attempt the minimum of adjustments to vector of positions such that a given distance threshold is enforced ## Example Data