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test_dna_mut_all.expected
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test_dna_mut_all.expected
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Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description
NA contig05 237 1224 - 23S_A2058A Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN POINTN 988 2905 34.01 81.08 1004 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig05 237 1224 - 23S_C2611C Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE ERYTHROMYCIN/TELITHROMYCIN POINTN 988 2905 34.01 81.08 1004 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig05 237 1224 - 23S_G2057G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MULTIDRUG CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN POINTN 988 2905 34.01 81.08 1004 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig05 237 1224 - 23S_G2447G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 988 2905 34.01 81.08 1004 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig05 237 1224 - 23S_T2609T Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE TELITHROMYCIN POINTN 988 2905 34.01 81.08 1004 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig14 1 1089 + pmrB_A159A two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_C84R Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_E121E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_E166E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_G206G two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_L10L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_L14L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_P94P two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_T147T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_T156T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1 1089 + pmrB_V161V two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_A159A two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_C84R Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_E121E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_E166E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_G206G two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_L10L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_L14L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_P94P two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_T147T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_T156T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 1093 2181 + pmrB_V161V two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_A159A two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_C84C two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_E121E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_E166E two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_G206G two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_L10L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_L14L two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_P94P two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_T147T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_T156T two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig14 2185 3273 + pmrB_V161V two-component system sensor histidine kinase PmrB [WILDTYPE] core AMR POINT COLISTIN COLISTIN EXACTX 363 363 100.00 100.00 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA
NA contig15 1 2905 + 23S_A2058T Escherichia azithromycin/erythromycin/telithromycin resistant 23S core AMR POINT MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_C2611C Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT LINCOSAMIDE/OXAZOLIDINONE CLINDAMYCIN/LINEZOLID POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE/OXAZOLIDINONE CLARITHROMYCIN/LINEZOLID POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_G2057G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MULTIDRUG CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_G2447G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_T2609T Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 1 2905 + 23S_T754T Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_A2058A Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_C2611C Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT LINCOSAMIDE/OXAZOLIDINONE CLINDAMYCIN/LINEZOLID POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE/OXAZOLIDINONE CLARITHROMYCIN/LINEZOLID POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_G2032G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_G2057G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MULTIDRUG CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_G2447G Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT OXAZOLIDINONE LINEZOLID POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_T2609T Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE TELITHROMYCIN POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig15 2906 5810 + 23S_T754T Escherichia 23S ribosomal RNA [WILDTYPE] core AMR POINT MACROLIDE ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 100.00 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA
NA contig16 1 720 + nfsA_E223E nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_G131G nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_K141STOP Escherichia nitrofurantoin resistant NfsA core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_Q44Q nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_R133R nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_R15C Escherichia nitrofurantoin resistant NfsA core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_R203R nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig16 1 720 + nfsA_S33S nitroreductase NfsA [WILDTYPE] core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA
NA contig17 1 247 + ampC_C-11C Escherichia ampC/blaEC promoter region [WILDTYPE] core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA
NA contig17 1 247 + ampC_C-42C Escherichia ampC/blaEC promoter region [WILDTYPE] core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA
NA contig17 1 247 + ampC_G-15G Escherichia ampC/blaEC promoter region [WILDTYPE] core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA
NA contig17 1 247 + ampC_T-14T Escherichia ampC/blaEC promoter region [WILDTYPE] core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA
NA contig17 1 247 + ampC_T-14TGT Escherichia cephalosporin resistant ampC core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA
NA contig17 1 247 + ampC_T-32T Escherichia ampC/blaEC promoter region [WILDTYPE] core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA