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_config.yml
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_config.yml
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name: OBO Foundry
title: The OBO Foundry
markdown: redcarpet
pygments: true
baseurl: /
imgurl: /images
author:
name: OBO Technical WG
ontologies:
- alternatePrefix: ChEBI
browsers:
- {label: CHEBI, title: EBI CHEBI Browser, url: 'http://www.ebi.ac.uk/chebi/chebiOntology.do?treeView=true&chebiId=CHEBI:24431#graphView'}
build: {infallible: 1, method: archive, path: archive/main, source_url: 'http://build.berkeleybop.org/job/build-chebi/lastSuccessfulBuild/artifact/*zip*/archive.zip'}
contact: {email: gowen@ebi.ac.uk, label: Gareth Owen}
description: A structured classification of molecular entities of biological interest
focusing on 'small' chemical compounds.
domain: biochemistry
homepage: http://www.ebi.ac.uk/chebi
id: chebi
in_foundry_order: 1
layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/chebi.owl
page: http://www.ebi.ac.uk/chebi/init.do?toolBarForward=userManual
products:
- {id: chebi.owl, ontology_purl: 'http://purl.obolibrary.org/obo/chebi.owl'}
- {id: chebi.obo, ontology_purl: 'http://purl.obolibrary.org/obo/chebi.obo'}
title: Chemical Entities of Biological Interest
tracker: https://sourceforge.net/p/chebi/curator-requests/
twitter: chebit
- browsers:
- {label: DO, title: DO Browser, url: 'http://www.disease-ontology.org/'}
build: {infallible: 1, method: obo2owl, source_url: 'http://sourceforge.net/p/diseaseontology/code/HEAD/tree/trunk/HumanDO.obo?format=raw'}
contact: {email: lynn.schriml@gmail.com, label: Lynn Schriml}
description: An ontology for describing the classification of human diseases organized
by etiology.
domain: disease
facebook: https://www.facebook.com/diseaseontology
homepage: http://diseaseontology.sourceforge.net/
id: doid
in_foundry_order: 1
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/doid.owl
page: http://diseaseontology.sourceforge.net/
products:
- {id: doid.owl, ontology_purl: 'http://purl.obolibrary.org/obo/doid.owl'}
- {id: doid.obo, ontology_purl: 'http://purl.obolibrary.org/obo/doid.obo'}
publications:
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/?term=25348409', title: 'Disease Ontology
2015 update: an expanded and updated database of human diseases for linking
biomedical knowledge through disease data'}
taxon: {id: 'NCBITaxon:9606', label: Homo sapiens}
title: Human Disease Ontology
tracker: http://sourceforge.net/tracker/?func=add&group_id=79168&atid=555739
twitter: diseaseontology
- browsers:
- {label: AmiGO, title: Gene Ontology AmiGO 2 Browser, url: 'http://amigo.geneontology.org/amigo/term/GO:0008150#display-lineage-tab'}
build: {checkout: 'svn --ignore-externals co svn://ext.geneontology.org/trunk/ontology',
infallible: 1, method: vcs, system: svn}
dependencies:
- {id: uberon, subset: go/extensions/uberon_import.owl}
- {id: cl, subset: go/extensions/cl_import.owl}
- {id: ncbitaxon, subset: go/extensions/ncbitaxon_import.owl}
- {id: ro, subset: go/extensions/ro_import.owl}
- connects:
- {id: nifstd}
- {id: go}
description: Bridging axioms between nifstd and go
id: go/extensions/go-bridge-to-nifstd.owl
publications:
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/24093723', title: 'The Gene Ontology
(GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy
Ontology) and other recent developments.'}
title: GO bridge to NIFSTD
type: BridgeOntology
depicted_by: http://geneontology.org/sites/default/files/go-logo-icon.mini__0.png
description: An ontology for describing the function of genes and gene products
domain: biology
facebook: https://www.facebook.com/Gene-Ontology-305908656519/
id: go
in_foundry_order: 1
integration_server: http://build.berkeleybop.org/view/GO
label: GO
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/go.owl
products:
- {id: go.owl, ontology_purl: 'http://purl.obolibrary.org/obo/go.owl'}
- {description: The core ontology plus axioms connecting to select external ontologies,
id: go/extensions/go-plus.owl, ontology_purl: 'http://purl.obolibrary.org/obo/go/extensions/go-plus.owl',
title: GO-Plus}
- {description: Classes added to ncbitaxon for groupings such as prokaryotes, id: go/extensions/go-taxon-groupings.owl,
ontology_purl: 'http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl',
title: GO Taxon Groupings}
taxon: {id: 'NCBITaxon:1', label: All life}
termgenie: http://go.termgenie.org
title: Gene Ontology
tracker: https://github.com/geneontology/go-ontology/issues/
twitter: news4go
- browsers:
- {label: BioPortal, title: BioPortal Browser, url: 'http://bioportal.bioontology.org/ontologies/OBI?p=classes'}
build: {source_url: 'http://purl.obofoundry.org/obo/obi/repository/trunk/src/ontology/branches/'}
contact: {email: bpeters@liai.org, label: Bjoern Peters}
depicted_by: https://svn.code.sf.net/p/obi/code/trunk/web/htdocs/images/obi-lotext.png
description: An integrated ontology for the description of life-science and clinical
investigations
domain: experiments
homepage: http://obi-ontology.org
id: obi
in_foundry_order: 1
integration_server: http://build.berkeleybop.org/job/build-obi/
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
mailing_list: http://groups.google.com/group/obi-users
ontology_purl: http://purl.obolibrary.org/obo/obi.owl
products:
- {id: obi.owl, ontology_purl: 'http://purl.obolibrary.org/obo/obi.owl', title: OBI}
- {id: obi/obi_core.owl, ontology_purl: 'http://purl.obolibrary.org/obo/obi/obi_core.owl',
title: OBI Core}
title: Ontology for Biomedical Investigations
tracker: http://purl.obofoundry.org/obo/obi/tracker
- browsers:
- {label: BioPortal, title: BioPortal Ontology Browser, url: 'https://bioportal.bioontology.org/ontologies/PATO'}
build: {infallible: 1, method: obo2owl, source_url: 'https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo'}
contact: {email: g.gkoutos@gmail.com, label: George Gkoutos}
description: An ontology of phenotypic qualities (properties, attributes or characteristics)
domain: phenotype
homepage: https://github.com/pato-ontology/pato/
id: pato
in_foundry_order: 1
jobs:
- {id: 'http://build.berkeleybop.org/job/build-pato', type: DryRunBuild}
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/pato.owl
products:
- {id: pato.owl, ontology_purl: 'http://purl.obolibrary.org/obo/pato.owl'}
- {id: pato.obo, ontology_purl: 'http://purl.obolibrary.org/obo/pato.obo'}
repository: https://github.com/pato-ontology/pato/
title: Phenotypic quality
tracker: https://github.com/pato-ontology/pato/issues
- build: {infallible: 1, method: obo2owl, notes: switch to vcs method, source_url: 'https://raw.githubusercontent.com/Planteome/plant-ontology/master/po-release-files/plant_ontology.obo'}
contact: {email: jaiswalp@science.oregonstate.edu, label: Pankaj Jaiswal}
description: The Plant Ontology is a structured vocabulary and database resource
that links plant anatomy, morphology and growth and development to plant genomics
data.
domain: anatomy and development
homepage: http://www.plantontology.org
id: po
in_foundry_order: 1
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/po.owl
page: http://www.plantontology.org/amigo/go.cgi
products:
- {id: po.owl, ontology_purl: 'http://purl.obolibrary.org/obo/po.owl'}
- {id: po.obo, ontology_purl: 'http://purl.obolibrary.org/obo/po.obo'}
publications:
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/23220694', title: The plant ontology
as a tool for comparative plant anatomy and genomic analyses.}
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/22847540', title: Ontologies as integrative
tools for plant science.}
taxon: {id: 'NCBITaxon:33090', label: Viridiplantae}
title: Plant Ontology
tracker: https://github.com/Planteome/plant-ontology/issues
twitter: planteome
- build: {infallible: 0, method: obo2owl, oort_args: --no-reasoner, source_url: 'ftp://ftp.pir.georgetown.edu/databases/ontology/pro_obo/pro.obo'}
contact: {email: dan5@georgetown.edu, label: Darren Natale}
description: an ontological representation of protein-related entities
development: {id_policy: 'https://pir17.georgetown.edu/confluence/display/PROWIKI/PRO+URI+policy'}
documentation: ftp://ftp.pir.georgetown.edu/databases/ontology/pro_obo/pro_readme.txt
domain: proteins
homepage: http://proconsortium.org
id: pr
in_foundry_order: 1
layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/pr.owl
products:
- {id: pr.owl, ontology_purl: 'http://purl.obolibrary.org/obo/pr.owl'}
title: PRotein Ontology (PRO)
tracker: http://sourceforge.net/tracker/?group_id=266825&atid=1135711
- build: {infallible: 0, method: obo2owl, source_url: 'https://raw.githubusercontent.com/xenopus-anatomy/xao/master/xenopus_anatomy.obo'}
description: Anatomy and development of the African clawed frog (<i>Xenopus laevis</i>).
domain: anatomy
homepage: http://www.xenbase.org/anatomy/xao.do?method=display
id: xao
in_foundry_order: 1
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/xao.owl
products:
- {id: xao.owl, ontology_purl: 'http://purl.obolibrary.org/obo/xao.owl'}
publications:
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/18817563', title: An ontology for Xenopus
anatomy and development.}
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/24139024', title: 'Enhanced XAO: the
ontology of Xenopus anatomy and development underpins more accurate annotation
of gene expression and queries on Xenbase.'}
taxon: {id: 'NCBITaxon:8353', label: Xenopus}
title: Xenopus anatomy and development
tracker: https://github.com/xenopus-anatomy/xao/issues
- build: {infallible: 1, method: obo2owl, notes: may be ready to switch to vcs soon,
source_url: 'https://raw.githubusercontent.com/cerivs/zebrafish-anatomical-ontology/master/src/zebrafish_anatomy.obo'}
contact: {email: zfinadmin@zfin.org, label: ZFIN administrators}
description: A structured controlled vocabulary of the anatomy and development of
the Zebrafish
domain: anatomy
homepage: http://zfin.org/zf_info/anatomy/dict/sum.html
id: zfa
in_foundry_order: 1
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/zfa.owl
products:
- {id: zfa.owl, ontology_purl: 'http://purl.obolibrary.org/obo/zfa.owl'}
publications:
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/24568621', title: 'The zebrafish anatomy
and stage ontologies: representing the anatomy and development of Danio rerio.'}
taxon: {id: 'NCBITaxon:7954', label: Danio}
title: Zebrafish anatomy and development
tracker: https://github.com/cerivs/zebrafish-anatomical-ontology/issues
- build: {checkout: 'git clone https://github.com/obophenotype/human-developmental-anatomy-ontology.git',
method: vcs, path: src/ontology, system: git}
contact: {email: J.Bard@ed.ac.uk, label: Jonathan Bard}
description: AEO is an ontology of anatomical structures that expands CARO, the
Common Anatomy Reference Ontology
domain: anatomy
homepage: https://github.com/obophenotype/human-developmental-anatomy-ontology/
id: aeo
layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/aeo.owl
products:
- {id: aeo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/aeo.owl'}
title: Anatomical Entity Ontology
- build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/aero.owl'}
contact: {email: mcourtot@gmail.com, label: Melanie Courtot}
description: The Adverse Event Reporting Ontology (AERO) is an ontology aimed at
supporting clinicians at the time of data entry, increasing quality and accuracy
of reported adverse events
domain: health
homepage: http://purl.obolibrary.org/obo/aero
id: aero
layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
url: 'http://creativecommons.org/licenses/by/3.0/'}
ontology_purl: http://purl.obolibrary.org/obo/aero.owl
products:
- {id: aero.owl, ontology_purl: 'http://purl.obolibrary.org/obo/aero.owl'}
title: Adverse Event Reporting Ontology
- build: {method: obo2owl, source_url: 'https://raw.githubusercontent.com/obophenotype/ascomycete-phenotype-ontology/master/apo.obo'}
contact: {email: maria@genome.stanford.edu, label: Maria Costanza}
description: A structured controlled vocabulary for the phenotypes of Ascomycete
fungi
domain: phenotype
homepage: http://www.yeastgenome.org/
id: apo
layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/apo.owl
products:
- {id: apo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/apo.owl'}
- {id: apo.obo, ontology_purl: 'http://purl.obolibrary.org/obo/apo.obo'}
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title: Ascomycete phenotype ontology
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- contact: {email: rwalls2008@gmail.com, label: Ramona Walls}
description: An ontology to support the interoperability of biodiversity data, including
data on museum collections, environmental/metagenomic samples, and ecological
surveys.
homepage: https://github.com/tucotuco/bco
id: bco
in_foundry: false
layout: ontology_detail
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- browsers:
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title: Basic Formal Ontology
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description: An ontology for respresenting spatial concepts, anatomical axes, gradients,
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domain: anatomy
homepage: https://github.com/obophenotype/biological-spatial-ontology
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layout: ontology_detail
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Ontology.'}
title: Biological Spatial Ontology
tracker: https://github.com/obophenotype/biological-spatial-ontology/issues
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contact: {email: a.chang@tu-bs.de, label: Antje Chang}
description: A structured controlled vocabulary for the source of an enzyme comprising
tissues, cell lines, cell types and cell cultures.
domain: anatomy
homepage: http://www.brenda-enzymes.info
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layout: ontology_detail
license: {alert: Restricted, label: BRENDA license, url: 'http://www.brenda-enzymes.org/copy.php'}
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sources'}
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contact: {email: haendel@ohsu.edu, label: Melissa Haendel}
description: An upper level ontology to facilitate interoperability between existing
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homepage: https://github.com/obophenotype/caro/
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title: Common Anatomy Reference Ontology
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- build: {method: owl2obo, source_url: 'http://purl.obolibrary.org/obo/cdao.owl'}
contact: {email: balhoff@nescent.org, label: Jim Balhoff}
description: a formalization of concepts and relations relevant to evolutionary
comparative analysis
homepage: http://sourceforge.net/apps/mediawiki/cdao/index.php?title=Main_Page
id: cdao
layout: ontology_detail
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description: An anatomical and developmental ontology for cephalopods
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homepage: https://github.com/obophenotype/cephalopod-ontology
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layout: ontology_detail
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title: Cephalopod Ontology
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description: Includes terms for the descriptors commonly used in cheminformatics
software applications and the algorithms which generate them.
domain: biochemistry
homepage: http://code.google.com/p/semanticchemistry/
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description: CHMO, the chemical methods ontology, describes methods used to
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homepage: http://code.google.com/p/rsc-cmo/
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title: Chemical Methods Ontology
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dependencies:
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- {id: go}
- {id: ro}
- {id: chebi}
- {id: pato}
description: The Cell Ontology is a structured controlled vocabulary for cell types
in animals.
domain: cells
id: cl
integration_server: http://build.berkeleybop.org/job/build-cl/
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layout: ontology_detail
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ontology_purl: http://purl.obolibrary.org/obo/cl.owl
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taxon: {id: 'NCBITaxon:33208', label: Metazoa}
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contact: {email: Sirarat.Sarntivijai@fda.hhs.gov, label: Sirarat Sarntivijai}
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layout: ontology_detail
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contact: {email: shimoyama@mcw.edu, label: Mary Shimoyama}
description: Morphological and physiological measurement records generated from
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domain: clinical
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dependencies:
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description: An anatomical and developmental ontology for ctenophores (Comb Jellies)
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contact: {email: adrien.barton@gmail.com, label: Adrien Barton}
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description: A structured controlled vocabulary of the anatomy of the slime-mould
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- contact: {email: Maria Herrero, label: mhzazo@pa.uc3m.es}
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contact: {email: mmc46@gen.cam.ac.uk, label: Marta Costa}
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homepage: http://purl.obolibrary.org/obo/fbcv
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layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/dpo.owl
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taxon: {id: 'NCBITaxon:7227', label: Drosophila}
title: Drosophila Phenotype Ontology
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description: An ontology to support comparative effectiveness researchers studying
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domain: health
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description: An ontology for experimental and other evidence statements.
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homepage: https://github.com/evidenceontology/evidenceontology/
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description: A structured controlled vocabulary of stage-specific anatomical structures
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title: Plant Environment Ontology
tracker: https://github.com/Planteome/plant-environment-ontology/issues
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description: An ontology designed to support the semantic annotation of epidemiology
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homepage: http://code.google.com/p/eagle-i/
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title: eagle-i resource ontology
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description: Vocabularies for describing exposure data to inform understanding of
environmental health.
domain: health
homepage: http://ctdbase.org/downloads/#exposures
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layout: ontology_detail
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page: http://ctdbase.org/downloads/#exposures
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title: Exposure ontology
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contact: {email: maria@genome.stanford.edu, label: Maria Costanzo}
description: A structured controlled vocabulary for the anatomy of fungi.
domain: anatomy
homepage: http://www.yeastgenome.org/fungi/fungal_anatomy_ontology/
id: fao
layout: ontology_detail
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page: http://www.yeastgenome.org/fungi/fungal_anatomy_ontology/#description
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taxon: {id: 'NCBITaxon:4751', label: Fungal}
title: Fungal gross anatomy
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contact: {email: dorloff@ncmir.ucsd.edu, label: David Orloff}
description: A structured controlled vocabulary of sample preparation, visualization
and imaging methods used in biomedical research.
domain: experiments
homepage: http://cellimagelibrary.org/
id: fbbi
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preferredPrefix: FBbi
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title: Biological imaging methods
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- {label: VFB, title: Virtual Fly Brain, url: 'http://www.virtualflybrain.org/site/stacks/index.htm?add=FBbt:00007401'}
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contact: {email: mmc46@gen.cam.ac.uk, label: Marta Costa}
description: An ontology representing the gross anatomy of Drosophila melanogaster.
domain: anatomy
homepage: http://purl.obolibrary.org/obo/fbbt
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layout: ontology_detail
license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
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publications:
- {id: 'http://dx.doi.org/10.1186/2041-1480-4-32', title: 'The Drosophila anatomy
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- {id: 'http://dx.doi.org/10.1093/bioinformatics/bts113', title: A strategy for
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- {id: 'http://dx.doi.org/10.1093/nar/gkj068', title: 'FlyBase: anatomical data,
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taxon: {id: 'NCBITaxon:7227', label: Drosophila}
title: Drosophila gross anatomy
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build: {method: obo2owl, source_url: 'http://sourceforge.net/p/fbcv/code-0/HEAD/tree/src/trunk/ontologies/fbcv-edit.obo?format=raw'}
contact: {email: mmc46@gen.cam.ac.uk, label: Marta Costa}
description: A structured controlled vocabulary used for various aspects of annotation
by FlyBase.
domain: null
homepage: http://purl.obolibrary.org/obo/fbcv
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layout: ontology_detail
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preferredPrefix: FBcv
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title: FlyBase Controlled Vocabulary
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contact: {email: mmc46@gen.cam.ac.uk, label: Marta Costa}
description: A structured controlled vocabulary of the development of Drosophila
melanogaster.
domain: development
homepage: http://purl.obolibrary.org/obo/fbdv
id: fbdv
layout: ontology_detail
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taxon: {id: 'NCBITaxon:7227', label: Drosophila}
title: Drosophila development
tracker: http://purl.obolibrary.org/obo/fbdv/tracker
- contact: {email: hastings@ebi.ac.uk, label: Janna Hastings}
description: An ontology of physico-chemical methods and properties.
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title: Physico-chemical methods and properties
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contact: {email: burkesquires@gmail.com, label: Burke Squires}
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layout: ontology_detail
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title: Influenza Ontology
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contact: {email: mejino@comcast.net, label: Onard Mejino}
description: This is currently a slimmed down version of FMA
domain: anatomy
homepage: http://sig.biostr.washington.edu/projects/fm/index.html
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layout: ontology_detail
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- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/18360535'}
- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/16779026'}
taxon: {id: 'NCBITaxon:9606', label: Homo sapiens}
title: Foundational Model of Anatomy (subset)
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contact: {email: mah79@cam.ac.uk, label: Midori Harris}
depicted_by: http://www.pombase.org/sites/pombase.org/files/images/fypo_logo_tiny.png
description: FYPO is a formal ontology of phenotypes observed in fission yeast.
domain: phenotype
homepage: https://github.com/pombase/fypo
id: fypo
layout: ontology_detail
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taxon: {id: 'NCBITaxon:4896', label: S. pombe}
title: Fission Yeast Phenotype Ontology
tracker: https://github.com/pombase/fypo/issues
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contact: {email: ma11@gen.cam.ac.uk, label: Michael Ashburner}
description: A gazetteer constructed on ontological principles
homepage: http://gensc.org/gc_wiki/index.php/GAZ_Project
id: gaz
layout: ontology_detail
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title: Gazetteer
tracker: https://github.com/EnvironmentOntology/envo/issues/
- contact: {email: MBrochhausen@uams.edu, label: Mathias Brochhausen}
description: An ontology of geographical entities
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contact: {email: diapriid@gmail.com, label: Matt Yoder}
description: A structured controlled vocabulary of the anatomy of the Hymenoptera
(bees, wasps, and ants)
domain: anatomy
homepage: http://hymao.org
id: hao
layout: ontology_detail
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contact: {email: bgee@isb-sib.ch, label: BgeeDB}
description: This ontology represents concepts related to homology, as well as other
concepts used to describe similarity and non-homology.
homepage: http://bioinfo.unil.ch
id: hom
layout: ontology_detail
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build: {infallible: 1, method: archive, path: archive/hp, source_url: 'http://compbio.charite.de/hudson/job/hpo/lastSuccessfulBuild/artifact/*zip*/archive.zip'}
contact: {email: sebastian.koehler@charite.de, label: Sebastian Koehler}
description: A structured and controlled vocabulary for the phenotypic features
encountered in human hereditary and other disease.
domain: phenotype
homepage: http://www.human-phenotype-ontology.org/
id: hp
layout: ontology_detail
ontology_purl: http://purl.obolibrary.org/obo/hp.owl
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- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/26119816', title: 'The Human Phenotype
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- {id: 'http://www.ncbi.nlm.nih.gov/pubmed/24217912', title: 'The Human Phenotype
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taxon: {id: 'NCBITaxon:9606', label: Homo sapiens}
termgenie: http://hp.termgenie.org
title: human phenotype ontology
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twitter: hp_ontology
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layout: ontology_detail