.pre-commit-config.yaml

# See https://pre-commit.com for more information
# See https://pre-commit.com/hooks.html for more hooks
repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: check-case-conflict
      - id: check-merge-conflict
      - id: check-added-large-files
  - repo: https://github.com/psf/black
    rev: 23.3.0
    hooks:
      - id: black
  - repo: https://github.com/codespell-project/codespell
    rev: v2.2.4
    hooks:
      - id: codespell
        exclude: 'third_party/'
  - repo: https://github.com/PyCQA/flake8
    rev: 5.0.4
    hooks:
      - id: flake8
        exclude: docs/conf.py
  - repo: https://github.com/shellcheck-py/shellcheck-py
    rev: v0.8.0.4
    hooks:
      - id: shellcheck

  - repo: https://github.com/pre-commit/mirrors-clang-format
    rev: 'v17.0.6'
    hooks:
      - id: clang-format
        exclude: 'third_party/'

  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: 'v1.3.0'
    hooks:
      - id: mypy
        files: 'python/pod5/src/'
        args: [ --check-untyped-defs, --ignore-missing-imports ]
        additional_dependencies:
          - types-setuptools
          - types-pytz

# NB: by default, pre-commit only installs the pre-commit hook ("commit" stage),
# but you can tell `pre-commit install` to install other hooks.
# This set of default stages ensures we don't slow down or break other git operations
# even if you install hooks for them.
default_stages:
  - commit
  - merge-commit
  - manual

# vi:et:sw=2:sts=2: