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Hello, I'm trying to get bonito running but I'm getting following issue on an ubuntu machine.
Traceback (most recent call last):
File "/root/miniconda3/envs/py37/bin/bonito", line 5, in <module>
from bonito import main
File "/root/miniconda3/envs/py37/lib/python3.7/site-packages/bonito/__init__.py", line 2, in <module>
from bonito.cli import basecaller, train, evaluate, view, convert, download, export
File "/root/miniconda3/envs/py37/lib/python3.7/site-packages/bonito/cli/basecaller.py", line 17, in <module>
from bonito.io import CTCWriter, Writer, biofmt
File "/root/miniconda3/envs/py37/lib/python3.7/site-packages/bonito/io.py", line 21, in <module>
from bonito.util import mean_qscore_from_qstring
File "/root/miniconda3/envs/py37/lib/python3.7/site-packages/bonito/util.py", line 18, in <module>
import koi.lstm
File "/root/miniconda3/envs/py37/lib/python3.7/site-packages/koi/lstm.py", line 3, in <module>
from _runtime import lib
ImportError: /root/miniconda3/envs/py37/lib/python3.7/site-packages/_runtime.abi3.so: undefined symbol: host_run_lstm_fwd96
With research I did find it might be an issue with gcc and that it can't call this shared library file but I'm stuck on how to resolve that (or if this is even the issue).
Thank you very much in advance :)
The text was updated successfully, but these errors were encountered:
Hello, I'm trying to get bonito running but I'm getting following issue on an ubuntu machine.
With research I did find it might be an issue with gcc and that it can't call this shared library file but I'm stuck on how to resolve that (or if this is even the issue).
Thank you very much in advance :)
The text was updated successfully, but these errors were encountered: