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How are technical replicates coded or handled? #9

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justincbagley opened this issue Mar 22, 2018 · 0 comments
Open

How are technical replicates coded or handled? #9

justincbagley opened this issue Mar 22, 2018 · 0 comments

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@justincbagley
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Hi, how should one incorporate technical replicates of the same individual sample within a dataset into their saber analysis? Specifically, how is this coded? To provide an example, in ipyrad's demultiplexing script (here: https://github.com/dereneaton/ipyrad/blob/master/ipyrad/assemble/demultiplex.py), technical replicates must be named <sample_name>"-technical-replicate-". I'm wondering if something like this is possible with sabre.

Thanks for your help. Let me know if you need further information.

~J

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