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ThermoRawFileImport on MS3 fails #447
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Could you upload a sample file? I'll write to them. |
Orbitrap IDX up do MS4 |
Have you tried running the ThermoRawFileParser on this file?
It seems the parsing crashed after ~10% of the file. Not sure if that is also causing your problem with precursors, or if that is a different problem. Will investigate. |
Was fixed in the parser so we should update the parser internally |
@robinschmid @tomas-pluskal has this been fixed? Or it's still an open issue? |
I think we still have not updated the parser.. |
@robinschmid can you comment if this is still an issue? |
Should be fine after Tomas PR: #771 |
The raw data file import generates an mzML with only the last m/z isolation step. Usually mzML has multiple precursor ions sorted by MS level. See the snap below for MS3 from .raw.
@tomas-pluskal do you want to reach out about that?
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