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WARNING - 2021-06-10 19:09:47,430: You should specify 2 or more samples in order to compare genotypes.
INFO - 2021-06-10 19:09:47,499: Total comparisons: 1
INFO - 2021-06-10 19:09:47,502: Count of expected matches: 0
INFO - 2021-06-10 19:09:47,503: Count of unexpected matches: 0
INFO - 2021-06-10 19:09:47,504: Count of unexpected mismatches: 1
INFO - 2021-06-10 19:09:47,505: Count of expected mismatches: 0
INFO - 2021-06-10 19:09:47,513: Clustering input samples...
Traceback (most recent call last):
File "/usr/local/bin/biometrics", line 8, in <module>
sys.exit(main())
File "/usr/local/lib/python3.6/site-packages/biometrics/cli.py", line 252, in main
run_biometrics(args)
File "/usr/local/lib/python3.6/site-packages/biometrics/biometrics.py", line 412, in run_biometrics
run_genotyping(args, samples)
File "/usr/local/lib/python3.6/site-packages/biometrics/biometrics.py", line 144, in run_genotyping
clusters = cluster_handler.cluster(comparisons_input)
File "/usr/local/lib/python3.6/site-packages/biometrics/cluster.py", line 81, in cluster
len(sample2group), cluster_idx + 1, len(set(clusters['expected_sample_group']))))
UnboundLocalError: local variable 'cluster_idx' referenced before assignment
Traceback (most recent call last):
File "/usr/local/bin/biometrics", line 8, in <module>
sys.exit(main())
File "/usr/local/lib/python3.6/site-packages/biometrics/cli.py", line 252, in main
run_biometrics(args)
File "/usr/local/lib/python3.6/site-packages/biometrics/biometrics.py", line 406, in run_biometrics
run_minor_contamination(args, samples)
File "/usr/local/lib/python3.6/site-packages/biometrics/biometrics.py", line 81, in run_minor_contamination
minor_contamination.plot(samples, args.outdir)
File "/usr/local/lib/python3.6/site-packages/biometrics/minor_contamination.py", line 78, in plot
if len(contributing_sites) > 0:
TypeError: object of type 'float' has no len()
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: