-
Notifications
You must be signed in to change notification settings - Fork 7
/
Copy pathversion.xml
51 lines (48 loc) · 2.76 KB
/
version.xml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
<package name="PhyDyn" version="1.4.0">
<!-- require 2.7.3 -->
<depends on='BEAST.base' atleast='2.7.3'/>
<depends on='BEAST.app' atleast='2.7.3'/>
<!-- <packageapp description="PhyDyn command"-->
<!-- class="phydyn.command.CommandLine" args="" icon="" />-->
<service type="beastfx.app.inputeditor.InputEditor">
<!-- <provider classname="phydyn.app.beauti.PhyDynPopModelODEInputEditor"/>
<provider classname="beastfx.app.inputeditor.TypeTraitSetInputEditor"/>-->
</service>
<service type="beast.base.core.BEASTInterface">
<provider classname="phydyn.covariate.CovariateLikelihood"/>
<provider classname="phydyn.covariate.SEIRLikelihood"/>
<provider classname="phydyn.covariate.SeroprevalenceLikelihood"/>
<provider classname="phydyn.covariate.TrajectoryFit"/>
<provider classname="phydyn.covariate.distribution.Normal"/>
<provider classname="phydyn.covariate.distribution.ParamDistribution"/>
<provider classname="phydyn.evolution.speciation.MyTreePrior"/>
<provider classname="phydyn.evolution.tree.coalescent.STreeIntervals"/>
<provider classname="phydyn.evolution.tree.coalescent.STreeIntervalsStore"/>
<provider classname="phydyn.distribution.STreeGenericLikelihood"/>
<provider classname="phydyn.distribution.STreeLikelihood"/>
<provider classname="phydyn.distribution.STreeLikelihoodODE"/>
<provider classname="phydyn.loggers.MemoryLogger"/>
<provider classname="phydyn.loggers.STLhLogger"/>
<provider classname="phydyn.loggers.STreeRootLogger"/>
<provider classname="phydyn.loggers.TrajectoryLogger"/>
<provider classname="phydyn.model.Definition"/>
<provider classname="phydyn.model.Definitions"/>
<provider classname="phydyn.model.MatrixEquation"/>
<provider classname="phydyn.model.MatrixEquations"/>
<provider classname="phydyn.model.ModelParameters"/>
<provider classname="phydyn.model.ParamValue"/>
<provider classname="phydyn.model.PopModel"/>
<provider classname="phydyn.model.PopModelIsland"/>
<provider classname="phydyn.model.PopModelODE"/>
<provider classname="phydyn.model.TrajectoryOut"/>
<provider classname="phydyn.model.TrajectoryParameters"/>
<provider classname="phydyn.operators.LoopOperator"/>
<provider classname="phydyn.run.BasicTest"/>
<provider classname="phydyn.run.LikelihoodOut"/>
<provider classname="phydyn.run.TreeIntervalTest"/>
<provider classname="phydyn.run.VersionTest"/>
<provider classname="phydyn.run.XMLGenerator"/>
<provider classname="phydyn.tree.TreeGenerator"/>
<provider classname="phydyn.tree.TreeSimulator"/>
</service>
</package>