refresh-journal-lists.yml

name: Refresh Journal Lists

on:
  # Allow to run manually
  workflow_dispatch:

permissions:
  contents: read

jobs:
  publish:
    permissions:
      contents: write  # for peter-evans/create-pull-request to create branch
      pull-requests: write  # for peter-evans/create-pull-request to create a PR
    name: Refresh Journal List Files
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          persist-credentials: true
      - name: Set up JDK
        uses: actions/setup-java@v3
        with:
          java-version: 20
          distribution: 'temurin'
          cache: 'gradle'
      - name: Update journal lists
        run: |
          set +o pipefail

          # prepare journal lists
          cd /tmp
          git clone --depth=1 https://github.com/JabRef/abbrv.jabref.org.git
          cd abbrv.jabref.org/journals

          # remove all lists without dot in them
          # we use abbreviation lists containing dots in them only (to be consistent)
          rm journal_abbreviations_entrez.csv
          rm journal_abbreviations_medicus.csv
          rm journal_abbreviations_webofscience-dotless.csv

          # we currently do not have good support for BibTeX strings
          rm journal_abbreviations_ieee_strings.csv

          # prepare building
          mkdir -p $GITHUB_WORKSPACE/build/journals
          cp * $GITHUB_WORKSPACE/build/journals/

          # ensure that the .java classes are the most recent ones
          mkdir -p $GITHUB_WORKSPACE/buildSrc/src/copied/java/org/jabref/logic/journals
          cp $GITHUB_WORKSPACE/src/main/java/org/jabref/logic/journals/* $GITHUB_WORKSPACE/buildSrc/src/copied/java/org/jabref/logic/journals

          # create .mv file
          cd $GITHUB_WORKSPACE
          ./gradlew generateJournalAbbreviationList
      - uses: peter-evans/create-pull-request@v5
        if: github.ref == 'refs/heads/main'
        with:
          token: ${{ secrets.GITHUB_TOKEN }}
          branch: update-journallist
          title: "[Bot] Update Journal abbrev list"
          commit-message: Update journal abbrev list
      - name: Commit and push changes
        uses: EndBug/add-and-commit@v9
        if: github.ref != 'refs/heads/main'
        with:
          message: 'Update journal abbrev list'
          committer_email: actions@github.com
          fetch: false
          push: true