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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"
[project]
name = "mne-bids-pipeline"
# Keep in sync with README.md:
description = "A full-flegded processing pipeline for your MEG and EEG data"
readme = "README.md"
requires-python = ">=3.10"
license = { file = "LICENSE.txt" }
keywords = ["science", "neuroscience", "psychology"]
authors = [
{ name = "Eric Larson" },
{ name = "Alexandre Gramfort" },
{ name = "Mainak Jas" },
{ name = "Richard Höchenberger", email = "richard.hoechenberger@gmail.com" },
]
classifiers = [
"Intended Audience :: Science/Research",
"Programming Language :: Python",
]
dependencies = [
"psutil", # for joblib
"packaging",
"numpy",
"scipy",
"matplotlib",
"nibabel",
"joblib >= 0.14",
"threadpoolctl",
"dask[distributed]",
"bokeh", # for distributed dashboard
"jupyter-server-proxy", # to have dask and jupyter working together
"scikit-learn",
"pandas",
"pyarrow", # from pandas
"seaborn",
"json_tricks",
"pydantic >= 2.0.0",
"annotated-types",
"rich",
"python-picard",
"qtpy",
"pyvista",
"pyvistaqt",
"openpyxl",
"autoreject",
"mne[hdf5] >=1.7",
"mne-bids[full]",
"filelock",
]
dynamic = ["version"]
[project.optional-dependencies]
tests = [
"pytest",
"pytest-cov",
"pooch",
"psutil",
"ruff",
"jinja2",
"openneuro-py >= 2022.2.0",
"httpx >= 0.20",
"tqdm",
"Pygments",
"pyyaml",
]
docs = [
"mkdocs",
"mkdocs-material >= 9.0.4",
"mkdocs-material-extensions",
"mkdocs-macros-plugin",
"mkdocs-include-markdown-plugin",
"mkdocs-exclude",
"mkdocstrings-python",
"mike",
"livereload",
"black", # docstring reformatting
]
[project.scripts]
mne_bids_pipeline = "mne_bids_pipeline._main:main"
[project.urls]
homepage = "https://mne.tools/mne-bids-pipeline"
repository = "https://github.com/mne-tools/mne-bids-pipeline"
changelog = "http://mne.tools/mne-bids-pipeline/changes.html"
[tool.hatch.version]
source = "vcs"
raw-options = { version_scheme = "release-branch-semver" }
[tool.hatch.build]
exclude = [
"/.*",
"/codecov.yml",
"**/tests",
"/docs",
"/docs/source/examples/gen_examples.py", # specify explicitly because its exclusion is negated in .gitignore
"/Makefile",
"/CONTRIBUTING.md",
"ignore_words.txt",
]
[tool.codespell]
skip = "docs/site/*,*.html,steps/freesurfer/contrib/*"
ignore-words = "ignore_words.txt"
builtin = "clear,rare,informal,names,usage"
quiet-level = 3
interactive = 3
enable-colors = ""
count = ""
[tool.pytest.ini_options]
addopts = "-ra -vv --tb=short --cov=mne_bids_pipeline --cov-report= --junit-xml=junit-results.xml --durations=10"
testpaths = ["mne_bids_pipeline"]
junit_family = "xunit2"
[tool.ruff]
exclude = ["**/freesurfer/contrib", "dist/", "build/", "**/.*cache"]
[tool.ruff.lint]
select = ["A", "B006", "D", "E", "F", "I", "W", "UP", "TID252"]
ignore = [
"D104", # Missing docstring in public package
]
[tool.ruff.lint.pydocstyle]
convention = "numpy"