From 8adb8f1ddb4842b32afe92a28a354408034889a3 Mon Sep 17 00:00:00 2001
From: Luc Patiny <luc@patiny.com>
Date: Fri, 2 Feb 2024 10:01:06 +0100
Subject: [PATCH] feat!: update dependencies

They were many breaking changes in most of the related packages and you should go to the corresponding repository to check the details.
---
 .eslintrc.yml |  2 ++
 package.json  | 36 ++++++++++++++++++------------------
 src/index.js  |  5 +++--
 3 files changed, 23 insertions(+), 20 deletions(-)

diff --git a/.eslintrc.yml b/.eslintrc.yml
index f40ac5c..f4ab74d 100644
--- a/.eslintrc.yml
+++ b/.eslintrc.yml
@@ -1,3 +1,5 @@
 extends: cheminfo
 parserOptions:
   sourceType: module
+env:
+  jest: true
diff --git a/package.json b/package.json
index 93569a4..d7c50cb 100644
--- a/package.json
+++ b/package.json
@@ -65,27 +65,27 @@
     "ml-arrayxy-uniquex": "^1.0.2",
     "ml-bit-array": "^1.0.0",
     "ml-cart": "^2.1.1",
-    "ml-confusion-matrix": "^0.4.0",
+    "ml-confusion-matrix": "^2.0.0",
     "ml-cross-validation": "^1.3.0",
-    "ml-distance": "^3.0.0",
+    "ml-distance": "^4.0.1",
     "ml-distance-matrix": "^2.0.1",
-    "ml-fcnnls": "^1.1.1",
+    "ml-fcnnls": "^3.0.0",
     "ml-fnn": "^5.0.0",
-    "ml-gsd": "^10.1.2",
+    "ml-gsd": "^12.1.3",
     "ml-hash-table": "^1.0.0",
     "ml-hclust": "^3.1.0",
     "ml-kernel": "^3.0.0",
-    "ml-kmeans": "^5.0.0",
+    "ml-kmeans": "^6.0.0",
     "ml-knn": "^3.0.0",
-    "ml-levenberg-marquardt": "^4.1.0",
-    "ml-matrix": "^6.9.0",
+    "ml-levenberg-marquardt": "^4.1.3",
+    "ml-matrix": "^6.11.0",
     "ml-naivebayes": "^4.0.0",
     "ml-ngmca": "^1.0.0",
     "ml-pad-array": "^2.0.0",
-    "ml-pca": "^4.0.2",
+    "ml-pca": "^4.1.1",
     "ml-performance": "^0.2.0",
-    "ml-pls": "^4.1.1",
-    "ml-random": "^0.5.0",
+    "ml-pls": "^4.3.2",
+    "ml-random": "^1.0.1",
     "ml-random-forest": "^2.1.0",
     "ml-regression": "^5.0.0",
     "ml-savitzky-golay": "^5.0.0",
@@ -95,14 +95,14 @@
     "num-sort": "^3.0.0"
   },
   "devDependencies": {
-    "@babel/plugin-transform-modules-commonjs": "^7.16.8",
-    "@types/jest": "^27.4.1",
-    "cheminfo-build": "^1.1.11",
-    "eslint": "^8.10.0",
-    "eslint-config-cheminfo": "^7.2.2",
+    "@babel/plugin-transform-modules-commonjs": "^7.23.3",
+    "@types/jest": "^29.5.12",
+    "cheminfo-build": "^1.2.0",
+    "eslint": "^8.56.0",
+    "eslint-config-cheminfo": "^9.1.1",
     "esm": "^3.2.25",
-    "jest": "^27.5.1",
-    "prettier": "^2.5.1",
-    "rollup": "^2.69.2"
+    "jest": "^29.7.0",
+    "prettier": "^3.2.4",
+    "rollup": "^4.9.6"
   }
 }
diff --git a/src/index.js b/src/index.js
index ce29380..c49e505 100644
--- a/src/index.js
+++ b/src/index.js
@@ -14,7 +14,8 @@ import {
 export { PCA } from 'ml-pca';
 import * as HClust from 'ml-hclust';
 export { HClust };
-export { default as KMeans } from 'ml-kmeans';
+import * as KMeans from 'ml-kmeans';
+export { KMeans };
 
 // Supervised learning
 import * as NaiveBayes from 'ml-naivebayes';
@@ -23,7 +24,7 @@ export { default as KNN } from 'ml-knn';
 export { PLS, KOPLS, OPLS, oplsNipals } from 'ml-pls';
 import * as CrossValidation from 'ml-cross-validation';
 export { CrossValidation };
-export { default as ConfusionMatrix } from 'ml-confusion-matrix';
+export { ConfusionMatrix } from 'ml-confusion-matrix';
 export { DecisionTreeClassifier };
 export { RandomForestClassifier };