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setup.py
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setup.py
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from setuptools import setup, find_packages
from pathlib import Path
base_dir = Path(__file__).parent.resolve()
version_file = base_dir / "nextstrain/cli/__version__.py"
readme_file = base_dir / "README.md"
# Eval the version file to get __version__; avoids importing our own package
with version_file.open() as f:
exec(f.read())
# Get the long description from the README file
with readme_file.open(encoding = "utf-8") as f:
long_description = f.read()
# Nextstrain is a "namespace" package, which is supported natively in Python 3
# but not supported by find_packages(). A namespace package is a) shareable by
# several subpackages and b) is defined by the lack of an __init__.py. The
# actual concrete packages in this distribution are nextstrain.cli,
# nextstrain.cli.command, etc. Although find_packages() doesn't support
# namespace packages (it won't look within them), we can use find_packages() by
# looking past the namespace and then adding the namespace prefix back.
def find_namespaced_packages(namespace):
return [
"%s.%s" % (namespace, pkg)
for pkg in find_packages(namespace.replace(".", "/"))
]
setup(
name = "nextstrain-cli",
version = __version__, # noqa: F821
packages = find_namespaced_packages("nextstrain"),
data_files = [("", ["LICENSE"])],
description = "Nextstrain command-line tool",
long_description = long_description,
long_description_content_type = "text/markdown",
author = "Thomas Sibley",
author_email = "tsibley@fredhutch.org",
license = "MIT",
url = "https://github.com/nextstrain/cli",
project_urls = {
"Bug Reports": "https://github.com/nextstrain/cli/issues",
"Change Log": "https://github.com/nextstrain/cli/blob/master/CHANGES.md",
"Source": "https://github.com/nextstrain/cli",
},
classifiers = [
# Stable now
"Development Status :: 5 - Production/Stable",
# This is a CLI
"Environment :: Console",
# This is for bioinformatic software devs and researchers
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"Topic :: Software Development :: Build Tools",
"Topic :: Scientific/Engineering :: Bio-Informatics",
# License
"License :: OSI Approved :: MIT License",
# Python 3 only; subprocess.run is >=3.5
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
],
# Install a "nextstrain" program which calls nextstrain.cli.__main__.main()
# https://setuptools.readthedocs.io/en/latest/setuptools.html#automatic-script-creation
entry_points = {
"console_scripts": [
"nextstrain = nextstrain.cli.__main__:main",
],
},
python_requires = '>=3.5',
install_requires = [
"boto3",
"netifaces >=0.10.6",
"requests",
# We use pkg_resources.parse_version(), which (confusingly) is provided
# by setuptools. setuptools is nearly ever-present, but it can be
# missing!
"setuptools >=8.0.3",
],
)