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README.md

FHIR for Research Exercises - R version

Note: For more information, see the README in the root folder.

Running

You can run with one of the following:

  1. Binder
    1. Click here to launch this project in a free cloud JupyterLab environment: Binder
    2. Wait for RStudio to load (may take a few minutes to install all the dependencies).
    3. Follow "RStudio Instructions" below, starting with Step 2
  2. RStudio Cloud
    1. Follow "RStudio Instructions" below
  3. Local RStudio or your own RStudio Server instance
    1. Follow "RStudio Instructions" below

RStudio Instructions

After local RStudio is open, or your RStudio Server instance loads in your web browser:

  1. Click the "Terminal" tab and run git clone https://github.com/mitre/fhir-exercises
  2. In the "Files" pane, navigate to the fhir-exercises/R/ folder and click fhir-exercises-R.Rproj. Click "Yes" in the confirmation dialog to load the project.
  3. In the "Console", run renv::restore() and answer y when prompted (may take a few minutes).
  4. In the "Files" pane, click the exercise you wish to open (e.g., exercise_0.Rmd). This should open the RMarkdown file for the exercise in the editor.