pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
    http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <groupId>ome</groupId>
  <artifactId>bio-formats-matlab</artifactId>
  <version>5.8.2</version>
  <packaging>pom</packaging>

  <name>Bio-Formats bundle collection</name>
  <description>Create matlab of Bio-Formats jars and tools for distribution.</description>
  <url>https://www.openmicroscopy.org/bio-formats</url>
  <inceptionYear>2005</inceptionYear>

  <properties>
    <!-- If two artifacts on the classpath use two different versions of the
         same dependency, behavior is inconsistent at best, and often broken.
         The following properties facilitate consistency of dependency
         versions between various projects in the SciJava software stack.
         When possible, we advise using the relevant groupId and version
         properties for your dependencies rather than hardcoding them. -->

    <date>${maven.build.timestamp}</date>
    <year>2018</year>
    <project.rootdir>${basedir}</project.rootdir>
    <bioformats.version>5.8.2</bioformats.version>
    <bio-formats_package.version>${bioformats.version}</bio-formats_package.version>
    <imagej1.version>1.48s</imagej1.version>
    <log4j.version>1.2.17</log4j.version>
    <slf4j.version>1.7.6</slf4j.version>

    <!-- NB: Avoid platform encoding warning when copying resources. -->
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>

    <!-- NB: Specify formatting of the maven.build.timestamp property. -->
    <maven.build.timestamp.format>d MMMMM yyyy</maven.build.timestamp.format>

    <!-- NB: Override argLine property for extra maven-surefire-plugin args. -->
    <argLine/>
  </properties>

  <build>
    <!-- It is nice for "mvn" with no arguments to do something reasonable. -->
    <defaultGoal>install</defaultGoal>

    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-enforcer-plugin</artifactId>
        <version>3.0.0-M1</version>
        <executions>
          <execution>
            <id>enforce-maven</id>
            <goals>
              <goal>enforce</goal>
            </goals>
            <configuration>
              <rules>
                <requireMavenVersion>
                  <version>3.0.5</version>
                </requireMavenVersion>
              </rules> 
            </configuration>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <artifactId>maven-clean-plugin</artifactId>
        <version>3.0.0</version>
      </plugin>

      <plugin>
        <artifactId>maven-dependency-plugin</artifactId>
        <version>3.0.2</version>
      </plugin>

      <plugin>
        <artifactId>maven-deploy-plugin</artifactId>
        <version>2.8.2</version>
      </plugin>

      <plugin>
        <artifactId>maven-install-plugin</artifactId>
        <version>2.5.2</version>
      </plugin>

      <plugin>
        <artifactId>maven-plugin-plugin</artifactId>
        <version>3.5.1</version>
      </plugin>

      <plugin>
        <artifactId>maven-release-plugin</artifactId>
        <version>2.5.3</version>
        <dependencies>
          <dependency>
            <groupId>org.apache.maven.scm</groupId>
            <artifactId>maven-scm-provider-gitexe</artifactId>
            <version>1.9</version>
          </dependency>
        </dependencies>
      </plugin>

      <plugin>
        <artifactId>maven-resources-plugin</artifactId>
        <version>3.0.2</version>
      </plugin>

      <plugin>
        <artifactId>maven-source-plugin</artifactId>
        <version>3.0.1</version>
        <!-- Build source artifact in addition to main artifact. -->
        <executions>
          <execution>
            <goals>
              <goal>jar</goal>
            </goals>
          </execution>
        </executions>
      </plugin>

      <!-- Versions Maven plugin -
           http://mojo.codehaus.org/versions-maven-plugin/
           Check for new plugin versions using
           "mvn versions:display-plugin-updates" -->
      <plugin>
        <groupId>org.codehaus.mojo</groupId>
        <artifactId>versions-maven-plugin</artifactId>
        <version>2.5</version>
      </plugin>

      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-dependency-plugin</artifactId>
        <executions>
          <execution>
            <id>unpack-ome-xml</id>
            <phase>generate-resources</phase>
            <goals>
              <goal>copy</goal>
            </goals>
            <configuration>
              <artifactItems>
                <artifactItem>
                  <groupId>${project.groupId}</groupId>
                  <artifactId>bioformats_package</artifactId>
                  <version>${bio-formats_package.version}</version>
                  <type>jar</type>
                  <outputDirectory>${project.build.directory}/package-jars</outputDirectory>
                  <destFileName>bioformats_package.jar</destFileName>
                </artifactItem>
              </artifactItems>
            </configuration>
          </execution>
        </executions>
      </plugin>

      <plugin>
        <artifactId>maven-assembly-plugin</artifactId>
        <version>3.1.0</version>
        <configuration>
          <appendAssemblyId>false</appendAssemblyId>
        </configuration>
        <executions>
          <execution>
            <id>matlab-zip</id>
            <phase>compile</phase>
            <goals>
              <goal>single</goal>
            </goals>
            <configuration>
              <finalName>bio-formats-matlab-${project.version}</finalName>
              <descriptors>
                <descriptor>matlab-assembly.xml</descriptor>
              </descriptors>
            </configuration>
          </execution>
          <execution>
            <id>octave-tar</id>
            <phase>compile</phase>
            <goals>
              <goal>single</goal>
            </goals>
            <configuration>
              <finalName>bio-formats-octave-${project.version}</finalName>
              <descriptors>
                <descriptor>octave-assembly.xml</descriptor>
              </descriptors>
            </configuration>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>

  <prerequisites>
    <maven>3.0.5</maven>
  </prerequisites>

  <organization>
    <name>Open Microscopy Environment</name>
    <url>http://www.openmicroscopy.org/</url>
  </organization>

  <issueManagement>
    <system>Trac</system>
    <url>https://trac.openmicroscopy.org/ome</url>
  </issueManagement>

  <ciManagement>
    <system>Jenkins</system>
    <url>https://ci.openmicroscopy.org/</url>
  </ciManagement>

  <mailingLists>
    <mailingList>
      <name>OME-users</name>
      <subscribe>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/</subscribe>
      <unsubscribe>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/</unsubscribe>
      <post>ome-users@lists.openmicroscopy.org.uk</post>
      <archive>http://lists.openmicroscopy.org.uk/pipermail/ome-users/</archive>
    </mailingList>
    <mailingList>
      <name>OME-devel</name>
      <subscribe>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel/</subscribe>
      <unsubscribe>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-devel/</unsubscribe>
      <post>ome-devel@lists.openmicroscopy.org.uk</post>
      <archive>http://lists.openmicroscopy.org.uk/pipermail/ome-devel/</archive>
    </mailingList>
  </mailingLists>

  <scm>
    <connection>scm:git:git://github.com/ome/bio-formats-matlab</connection>
    <developerConnection>scm:git:git@github.com:ome/bio-formats-matlab</developerConnection>
    <tag>HEAD</tag>
    <url>http://github.com/ome/bio-formats-matlab</url>
  </scm>

  <!-- NB: for parent project -->
  <repositories>
    <repository>
      <id>central</id>
      <name>Central Repository</name>
      <url>https://repo.maven.apache.org/maven2</url>
    </repository>
    <repository>
      <id>unidata.releases</id>
      <url>https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases</url>
      <snapshots><enabled>false</enabled></snapshots>
    </repository>
    <repository>
      <id>ome</id>
      <name>OME Artifactory</name>
      <url>https://artifacts.openmicroscopy.org/artifactory/maven/</url>
    </repository>
  </repositories>

  <pluginRepositories>
    <pluginRepository>
      <id>central</id>
      <name>Central Repository</name>
      <url>https://repo.maven.apache.org/maven2</url>
      <layout>default</layout>
    </pluginRepository>
  </pluginRepositories>

  <distributionManagement>
    <repository>
      <id>ome.staging</id>
      <name>OME Staging Repository</name>
      <url>https://artifacts.openmicroscopy.org/artifactory/ome.staging</url>
    </repository>
    <snapshotRepository>
      <id>ome.snapshots</id>
      <name>OME Snapshots Repository</name>
      <url>https://artifacts.openmicroscopy.org/artifactory/ome.snapshots</url>
    </snapshotRepository>
  </distributionManagement>

  <profiles>
    <profile>
      <id>test-matlab</id>
      <build>
        <plugins>
          <plugin>
            <groupId>org.apache.maven.plugins</groupId>
            <artifactId>maven-dependency-plugin</artifactId>
            <version>3.0.2</version>
            <executions>
              <execution>
                <id>unpack</id>
                <phase>test</phase>
                <goals>
                  <goal>unpack</goal>
                </goals>
                <configuration>
                  <artifactItems>
                    <artifactItem>
                      <groupId>ome</groupId>
                      <artifactId>bio-formats-matlab</artifactId>
                      <version>${project.version}</version>
                      <type>zip</type>
                      <overWrite>false</overWrite>
                      <outputDirectory>${project.build.directory}/test-matlab</outputDirectory>
                    </artifactItem>
                  </artifactItems>
                </configuration>
              </execution>
            </executions>
          </plugin>
          <plugin>
            <groupId>org.codehaus.mojo</groupId>
            <artifactId>exec-maven-plugin</artifactId>
            <version>1.6.0</version>
            <executions>
              <execution>
                <id>run-tests</id>
                <phase>test</phase>
                <goals>
                  <goal>exec</goal>
                </goals>
              </execution>
            </executions>
            <configuration>
              <executable>matlab</executable>
              <workingDirectory>${java.io.tmpdir}</workingDirectory>
              <environmentVariables>
                <MATLABPATH>${project.build.directory}/test-matlab/bio-formats-matlab-${project.version}</MATLABPATH>
              </environmentVariables>
              <arguments>
                <argument>-nodesktop</argument>
                <argument>-nosplash</argument>
                <argument>-r</argument>
                <argument>runtests ${project.rootdir}/test</argument>
              </arguments>
            </configuration>
          </plugin>
        </plugins>
      </build>
    </profile>
  </profiles>

</project>