diff --git a/DESCRIPTION b/DESCRIPTION index 54d84450..0aea6368 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: miaViz Title: Microbiome Analysis Plotting and Visualization -Version: 1.11.0 +Version: 1.11.1 Authors@R: c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"), email = "tuomas.v.borman@utu.fi", @@ -62,5 +62,5 @@ Suggests: microbiomeDataSets, bluster Roxygen: list(markdown = TRUE) -RoxygenNote: 7.2.3 +RoxygenNote: 7.3.1 VignetteBuilder: knitr diff --git a/NEWS b/NEWS index 3d0bced4..344736e8 100644 --- a/NEWS +++ b/NEWS @@ -23,3 +23,4 @@ Changes in version 1.9.x + Added plotCCA and plotRDA functions Changes in version 1.11.x ++ replace addTaxonomyTree with addHierarchyTree after renaming in mia package diff --git a/R/plotTree.R b/R/plotTree.R index 377674d0..0aea3015 100644 --- a/R/plotTree.R +++ b/R/plotTree.R @@ -162,7 +162,7 @@ #' y #' }) #' x <- unsplitByRanks(GlobalPatterns) -#' x <- addTaxonomyTree(x) +#' x <- addHierarchyTree(x) #' #' highlights <- c("Phylum:Firmicutes","Phylum:Bacteroidetes", #' "Family:Pseudomonadaceae","Order:Bifidobacteriales") diff --git a/man/miaViz-package.Rd b/man/miaViz-package.Rd index cabf6484..c53e5263 100644 --- a/man/miaViz-package.Rd +++ b/man/miaViz-package.Rd @@ -2,6 +2,7 @@ % Please edit documentation in R/miaViz.R \docType{package} \name{miaViz-package} +\alias{miaViz} \alias{miaViz-package} \title{miaViz - Microbiome Analysis Plotting and Visualization} \description{ @@ -12,3 +13,19 @@ class. \seealso{ \link[mia:mia-package]{mia} class } +\author{ +\strong{Maintainer}: Tuomas Borman \email{tuomas.v.borman@utu.fi} (\href{https://orcid.org/0000-0002-8563-8884}{ORCID}) + +Authors: +\itemize{ + \item Felix G.M. Ernst \email{felix.gm.ernst@outlook.com} (\href{https://orcid.org/0000-0001-5064-0928}{ORCID}) + \item Leo Lahti \email{leo.lahti@iki.fi} (\href{https://orcid.org/0000-0001-5537-637X}{ORCID}) +} + +Other contributors: +\itemize{ + \item Basil Courbayre [contributor] + \item Giulio Benedetti \email{giulio.benedetti@utu.fi} (\href{https://orcid.org/0000-0002-8732-7692}{ORCID}) [contributor] +} + +} diff --git a/man/plotTree.Rd b/man/plotTree.Rd index 74927dad..5790a767 100644 --- a/man/plotTree.Rd +++ b/man/plotTree.Rd @@ -223,7 +223,7 @@ altExps(GlobalPatterns) <- y }) x <- unsplitByRanks(GlobalPatterns) -x <- addTaxonomyTree(x) +x <- addHierarchyTree(x) highlights <- c("Phylum:Firmicutes","Phylum:Bacteroidetes", "Family:Pseudomonadaceae","Order:Bifidobacteriales")