DESCRIPTION

Package: miaViz
Title: Microbiome Analysis Plotting and Visualization
Version: 1.15.4
Authors@R: 
    c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")), 
      person(given = "Felix G.M.", family = "Ernst", role = c("aut"),
             email = "felix.gm.ernst@outlook.com",
             comment = c(ORCID = "0000-0001-5064-0928")),
      person(given = "Leo", family = "Lahti", role = c("aut"),
             email = "leo.lahti@iki.fi",
             comment = c(ORCID = "0000-0001-5537-637X")),
      person(given = "Basil", family = "Courbayre", role = c("ctb")),
      person(given = "Giulio", family = "Benedetti", role = c("ctb"),
             email = "giulio.benedetti@utu.fi",
             comment = c(ORCID = "0000-0002-8732-7692")),
      person(given = "Théotime", family = "Pralas", role=c("ctb")),
      person(given = "Nitesh", family = "Turaga", role=c("ctb")),
      person(given = "Chouaib", family = "Benchraka", role=c("ctb")),
      person(given = "Sam", family = "Hillman", role=c("ctb")),
      person(given = "Muluh", family = "Muluh", role=c("ctb")),
      person(given = "Noah", family = "De Gunst", role=c("ctb")),
      person(given = "Ely", family = "Seraidarian", role=c("ctb")),
      person(given = "Himmi", family = "Lindgren", role=c("ctb")),
      person(given = "Vivian", family = "Ikeh", role=c("ctb")))
Description: The miaViz package implements functions to visualize
    TreeSummarizedExperiment objects especially in the context of microbiome
    analysis. Part of the mia family of R/Bioconductor packages.
biocViews: Microbiome, Software, Visualization
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
LazyData: false
Depends:
    R (>= 4.0),
    ggplot2,
    ggraph (>= 2.0),
    mia (>= 1.13.0),
    SummarizedExperiment,
    TreeSummarizedExperiment
Imports:
    ape,
    BiocGenerics,
    BiocParallel,
    DelayedArray,
    DirichletMultinomial,
    dplyr,
    ggnewscale,
    ggrepel,
    ggplot2,
    ggraph,
    ggtree,
    methods,
    rlang,
    S4Vectors,
    scales,
    scater,
    SingleCellExperiment,
    stats,
    tibble,
    tidygraph,
    tidyr,
    tidytext,
    tidytree,
    viridis
Suggests:
    BiocStyle,
    bluster,
    circlize,
    ComplexHeatmap,
    ggh4x,
    knitr,
    patchwork,
    rmarkdown,
    testthat,
    vegan
Remotes:
    github::microbiome/miaTime
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr