diff --git a/metaspace_converter/colocalization.py b/metaspace_converter/colocalization.py index 3e1da37..01ff4cd 100644 --- a/metaspace_converter/colocalization.py +++ b/metaspace_converter/colocalization.py @@ -20,9 +20,10 @@ def coloc_ml_preprocessing( In the publication, the authors evaluated colocalization metrics and preprocessing approaches. They found the best performance for - 1) median filtering of ion images with a (3, 3) kernel size and - 2) quantile thresholding at 50%, meaning all pixels with intensities below the 50% - quantile set to 0. + + 1. median filtering of ion images with a (3, 3) kernel size and + 2. quantile thresholding at 50%, meaning all pixels with intensities below the 50% + quantile set to 0. This function performs the same preprocessing steps. Recommended for call before running the ``colocalization`` function.