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163 Open 1,541 Closed
163 Open 1,541 Closed
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Issues list

[FEATURE] anvi-script-visualize-split-coverages to visualise coverage for genes across samples
#1517 opened Oct 7, 2020 by dbenitom
@mooreryan
4
[BUG] snakemake workflows give error when mapping a single metagenome to multiple references bug metagenomic workflow snakemake workflows
#1512 opened Sep 29, 2020 by efogarty11
anvi-cluster-contigs / Memory issues?
#1510 opened Sep 29, 2020 by GeoMicroSoares
3
[BUG] --cluster-contigs fails under some circumstances
#1494 opened Aug 26, 2020 by ekiefl
[FEATURE] anvi-estimate-scg-taxonomy exports scg fasta file feature request
#1491 opened Aug 14, 2020 by mschecht
[BUG] pandas 1.0.5 is incompatible with variabilityops
#1474 opened Jul 23, 2020 by ekiefl
snakemake workflows should accept non-paired reads snakemake workflows
#1422 opened May 4, 2020 by ekiefl
Issue with SVG file after passing a tree to anvi-interactive
#1410 opened Apr 18, 2020 by igorspp
Customizing memory usage per cpu, per rule in snakemake config file enhancement feature request snakemake workflows
#1404 opened Apr 8, 2020 by mschecht
@mschecht @ivagljiva
Error running anvi-dereplicate-genomes on multiple collections from one metagenome profile feature request
#1397 opened Apr 4, 2020 by brymerr921
@meren
2
Updating the mock contigs and BAM files anvi'o uses for component tests enhancement small project
#1396 opened Apr 3, 2020 by meren
Error when running anvi-merge-collections
#1395 opened Apr 3, 2020 by MelanieCHay
4
A bug when using the anvi-run-ncbi-cogs command to set up the COG distribution bug
#1393 opened Apr 2, 2020 by zhangchiqian
@meren
anvi-interactive - normalization of the layers data is not working interface small project
#1342 opened Jan 31, 2020 by FlorianTrigodet
3
Bug in checking for dependencies in anvi-script-visualize-split-coverages
#1306 opened Nov 26, 2019 by mooreryan
@mooreryan
anvi-export-locus cannot handle non-sequential gene caller ids bug
#1302 opened Nov 18, 2019 by mschecht
@mschecht
5
Add ability to provide a path to an external workflow to anvi-run-workflow enhancement snakemake workflows we wish we could
#1290 opened Nov 1, 2019 by ShaiberAlon
@ShaiberAlon
3
anvi-import-items-order fails (with an unhelpful error) for a blank profile database
#1278 opened Oct 17, 2019 by ShaiberAlon
@meren @ozcan @ShaiberAlon
Move taxonomy tests into the unit tests directory small project tests
#1266 opened Oct 15, 2019 by meren
anvi-get-split-coverages should report sample background colors in a separate file feature request feature small project
#1172 opened Jun 14, 2019 by meren
2
Improving collection mode, visualization of items in bins stored for pangenomes and metagneomes core design enhancement feature metagenomic workflow pangenomic workflow priority
#1143 opened Apr 25, 2019 by meren
1 of 3 tasks
v6
@ozcan
1
An importer script for phyloseq small project
#1135 opened Apr 7, 2019 by meren
anvi-run-workflow should allow to use pre-existing contigs databases enhancement
#1102 opened Feb 11, 2019 by ShaiberAlon
@ShaiberAlon
anvi-mcg-classifier should use the GENES.db if one exists and create one if it doesn't exist enhancement priority
#1083 opened Jan 3, 2019 by ShaiberAlon
@meren @ShaiberAlon
1
Hi-C data integration into anvi'o contigs database feature interface small project
#1073 opened Dec 15, 2018 by meren
1
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